def test_minimal_xsd(xsd40):
"""Test that example XML converts to example JSON."""
xsd40.assertValid(
etree.XML(
tostring({
'identifier': {
'identifierType': 'DOI',
'identifier': '10.1234/foo.bar',
},
'creators': [{
'creatorName': 'Nielsen, Lars Holm',
}, {
'creatorName': 'Nielsen, Lars Holm',
'nameIdentifier': {
'nameIdentifier': '1234',
'schemeURI': 'http://orcid.org',
'nameIdentifierScheme': 'ORCID',
}
}],
'titles': [{
'title': 'Minimal Test Case',
}],
'publisher':
'Invenio Software',
'publicationYear':
'2016',
'resourceType': {
'resourceTypeGeneral': 'Dataset'
}
}).encode('utf8')))
def generate_new_doi(*args):
# If you want to generate XML for earlier versions, you need to use either the
# schema31, schema40 or schema41 instead.
data = {
"identifier": {
"identifier": prefix + "/RDS." + str(args[0]),
"identifierType": "DOI"
},
"creators": [{
"creatorName": organization
}],
"titles": [{
"title": args[1]
}],
"publisher":
"ICIMOD",
"publicationYear":
args[2],
"language":
"en-us",
"resourceType": {
"resourceTypeGeneral": "Dataset"
},
"rightsList": [{
"rights":
"Creative Commons Attribution 4.0 International (CC-BY-4.0)",
"rightsURI": "https://creativecommons.org/licenses/by/4.0",
"lang": "en-us"
}],
"descriptions": [{
"descriptionType": "Abstract",
"description": args[3]
}],
}
# Validate dictionary
# assert schema41.validate(data)
# Generate DataCite XML from dictionary.
doc = schema41.tostring(data)
# print(doc)
# Initialize the MDS client.
d = DataCiteMDSClient(
username=login_user,
password=login_pass,
url=url,
prefix=prefix,
)
# Set metadata for DOI
d.metadata_post(doc)
# Mint new DOI
d.doi_post(prefix + '/RDS.' + str(args[0]), args[4])
logging.basicConfig(filename='logs/DOI_generation_Log_' + date_time +
'.log',
filemode='w',
format='%(asctime)s - %(message)s',
level=logging.INFO)
logging.info("{} DOI Registration for id={} and title={}".format(
args[5], args[0], args[1]))
print(args[5], prefix + '/RDS.' + str(args[0]), args[4])
if __name__ == '__main__':
ids = getmdIDs()
for item in ids:
try:
print(item)
documentInfo = database.DocumentInfo()
documentInfo.mdId = item
documentInfo = database.process(documentInfo)
xname = "D:/doi_out/" + str(item) + ".xml"
fxname = open(xname, 'w+')
fxname.write(schema41.tostring(documentInfo.data))
fxname.close()
d = getDataCiteClient()
d.metadata_post(schema41.tostring(documentInfo.data))
doi = documentInfo.data['identifier']['identifier']
d.doi_post(doi, documentInfo.url)
database.logDoiMinted(documentInfo)
print(
"update metadata_document set doi_created = getdate() where md_id ="
+ str(item))
print("xml file saved in " + xname)
print('done')
except datacite.errors.DataCiteServerError as error:
print(error)
except:
def test_json_to_xml(example_xml_file41, example_json41, xsd41):
"""Test that example XML converts to example JSON."""
xsd41.assertValid(etree.XML(example_xml_file41.encode('utf8')))
xsd41.assertValid(etree.XML(tostring(example_json41).encode('utf8')))