def test_search(self):
client = DatasetClient()
res = client.search("cancer human", "publication_date", "ascending")
assert res.json()["count"] > 0
try:
dataset = client.search("j9j9j9j9@£", "publication_date",
"ascending")
except BadRequest as err:
assert err.status == DATA_NOT_FOUND
try:
dataset = client.search(None, "publication_date", "ascending")
except BadRequest as err:
assert err.status == MISSING_PARAMETER
def source_from_id(acc):
client = DatasetClient()
api_output = client.search(acc, "id")
if api_output.datasets:
datasets = api_output.datasets
if len(datasets) > 1:
hits = []
for dataset in datasets:
if dataset.accession == acc:
hits.append(dataset)
if len(hits) == 1:
source = hits[0].database
return source
else:
click.echo('INFO')
click.echo(
f'{acc} is not a unique ID, leading to multiple hits.')
sys.exit()
else:
source = datasets[0].database
return source
else:
click.echo('INFO')
click.echo(f'{acc} could not be found in one of the repositories.')
sys.exit()
def test_search(self):
client = DatasetClient()
res = client.search("cancer human", "publication_date", "ascending")
assert len(res.datasets) > 0
assert res.count > 0
res_other_pages = client.search("cancer human", "publication_date", "ascending", 1200, 30, 20)
assert res_other_pages.count > 0
assert len(res_other_pages.datasets) == 30
try:
dataset = client.search("j9j9j9j9@£", "publication_date", "ascending")
except BadRequest as err:
assert err.status == DATA_NOT_FOUND
try:
dataset = client.search(None, "publication_date", "ascending")
except BadRequest as err:
assert err.status == MISSING_PARAMETER