def __init__(self, model, numIntType, energy, dim):
# self.data = data
self.model = MultiLayerNet(model[0], model[1], model[2])
self.model = self.model.to(dev)
self.intLoss = IntegrationLoss(numIntType, dim)
self.energy = energy
# self.post = PostProcessing(energy, dim)
self.dim = dim
self.lossArray = []
def __init__(self, model, numIntType, energy, dim):
self.model = MultiLayerNet(model[0], model[1], model[2])
self.model = self.model.to(dev)
self.intLoss = IntegrationLoss(numIntType, dim)
self.energy = energy
self.lossArray = []
self.dim = dim
class DeepEnergyMethod:
# Instance attributes
def __init__(self, model, numIntType, energy, dim):
# self.data = data
self.model = MultiLayerNet(model[0], model[1], model[2])
self.model = self.model.to(dev)
self.intLoss = IntegrationLoss(numIntType, dim)
self.energy = energy
self.lossArray = []
self.dim = dim
def train_model(self, shape, dxdydz, data, bForce, neumannBC, dirichletBC,
iteration, learning_rate):
x = torch.from_numpy(data).float()
x = x.to(dev)
x.requires_grad_(True)
# get tensor inputs and outputs for boundary conditions
# -------------------------------------------------------------------------------
# Dirichlet BC
# -------------------------------------------------------------------------------
dirBC_coordinates = {} # declare a dictionary
dirBC_values = {} # declare a dictionary
dirBC_penalty = {}
for i, keyi in enumerate(dirichletBC):
dirBC_coordinates[i] = torch.from_numpy(
dirichletBC[keyi]['coord']).float().to(dev)
dirBC_values[i] = torch.from_numpy(
dirichletBC[keyi]['known_value']).float().to(dev)
dirBC_penalty[i] = torch.tensor(
dirichletBC[keyi]['penalty']).float().to(dev)
# -------------------------------------------------------------------------------
# Neumann BC
# -------------------------------------------------------------------------------
neuBC_coordinates = {} # declare a dictionary
neuBC_values = {} # declare a dictionary
neuBC_penalty = {}
for i, keyi in enumerate(neumannBC):
neuBC_coordinates[i] = torch.from_numpy(
neumannBC[keyi]['coord']).float().to(dev)
neuBC_coordinates[i].requires_grad_(True)
neuBC_values[i] = torch.from_numpy(
neumannBC[keyi]['known_value']).float().to(dev)
neuBC_penalty[i] = torch.tensor(
neumannBC[keyi]['penalty']).float().to(dev)
# ----------------------------------------------------------------------------------
# Minimizing loss function (energy and boundary conditions)
# ----------------------------------------------------------------------------------
optimizer = torch.optim.LBFGS(self.model.parameters(),
lr=learning_rate,
max_iter=20)
start_time = time.time()
energy_loss_array = []
boundary_loss_array = []
loss_array = []
for t in range(iteration):
# Zero gradients, perform a backward pass, and update the weights.
def closure():
it_time = time.time()
# ----------------------------------------------------------------------------------
# Internal Energy
# ----------------------------------------------------------------------------------
u_pred = self.getU(x)
u_pred.double()
storedEnergy = self.energy.getStoredEnergy(u_pred, x)
internal2 = self.intLoss.lossInternalEnergy(storedEnergy,
dx=dxdydz[0],
dy=dxdydz[1],
dz=dxdydz[2],
shape=shape)
body_force = torch.from_numpy(bForce).float().to(dev)
bF = torch.bmm((u_pred + x).unsqueeze(1),
body_force.unsqueeze(2))
body_force_crit = self.intLoss.approxIntegration(bF,
dx=dxdydz[0],
dy=dxdydz[1],
dz=dxdydz[2],
shape=shape)
external2 = torch.zeros(len(neuBC_coordinates))
for i, vali in enumerate(neuBC_coordinates):
neu_u_pred = self.getU(neuBC_coordinates[i])
fext = torch.bmm(
(neu_u_pred + neuBC_coordinates[i]).unsqueeze(1),
neuBC_values[i].unsqueeze(2))
if i == 0:
hx, hy = (dxdydz[0], dxdydz[2])
Nx, Ny = (shape[0], shape[2])
external2[i] = self.intLoss.lossExternalEnergy(
fext, dx=hx, dy=hy, shape=[Nx, Ny])
elif i == 1:
hx, hy = (dxdydz[0], dxdydz[1])
Nx, Ny = (shape[0], shape[1])
external2[i] = self.intLoss.lossExternalEnergy(
fext, dx=hx, dy=hy, shape=[Nx, Ny])
elif i == 2:
hx, hy = (dxdydz[0], dxdydz[2])
Nx, Ny = (shape[0], shape[2])
external2[i] = self.intLoss.lossExternalEnergy(
fext, dx=hx, dy=hy, shape=[Nx, Ny])
elif i == 3:
hx, hy = (dxdydz[0], dxdydz[1])
Nx, Ny = (shape[0], shape[1])
external2[i] = self.intLoss.lossExternalEnergy(
fext, dx=hx, dy=hy, shape=[Nx, Ny])
else:
print(
"Not yet implemented !!! Please contact the author to ask !!!"
)
exit()
bc_u_crit = torch.zeros((len(dirBC_coordinates)))
for i, vali in enumerate(dirBC_coordinates):
dir_u_pred = self.getU(dirBC_coordinates[i])
bc_u_crit[i] = self.loss_squared_sum(
dir_u_pred, dirBC_values[i]) * dirBC_penalty[i]
energy_loss = internal2 - body_force_crit - torch.sum(
external2)
boundary_loss = torch.tensor([0])
loss = energy_loss
optimizer.zero_grad()
loss.backward()
print(
'Iter: %d Loss: %.9e Energy: %.9e Boundary: %.9e Time: %.3e'
% (t + 1, loss.item(), energy_loss.item(),
boundary_loss.item(), time.time() - it_time))
energy_loss_array.append(energy_loss.data)
boundary_loss_array.append(boundary_loss.data)
self.lossArray.append(loss.data)
return loss
optimizer.step(closure)
elapsed = time.time() - start_time
print('Training time: %.4f' % elapsed)
def getU(self, x):
u = self.model(x)
PI = torch.from_numpy(np.array(np.pi)).float()
angle = PI / 3
factor = 0.5
length = 1.25
Ux_known = 0
Uy_known = factor * (0.5 + (x[:, 1] - 0.5) * torch.cos(angle) -
(x[:, 2] - 0.5) * torch.sin(angle) - x[:, 1])
Uz_known = factor * (0.5 + (x[:, 1] - 0.5) * torch.sin(angle) +
(x[:, 2] - 0.5) * torch.cos(angle) - x[:, 2])
Ux = Ux_known + (x[:, 0] - length) * x[:, 0] * u[:, 0]
Uy = (Uy_known * x[:, 0] /
length) + (x[:, 0] - length) * x[:, 0] * u[:, 1]
Uz = (Uz_known * x[:, 0] /
length) + (x[:, 0] - length) * x[:, 0] * u[:, 2]
Ux = Ux.reshape(Ux.shape[0], 1)
Uy = Uy.reshape(Uy.shape[0], 1)
Uz = Uz.reshape(Uz.shape[0], 1)
u_pred = torch.cat((Ux, Uy, Uz), -1)
return u_pred
# --------------------------------------------------------------------------------
# Evaluate model to obtain:
# 1. U - Displacement
# 2. E - Green Lagrange Strain
# 3. S - 2nd Piola Kirchhoff Stress
# 4. F - Deformation Gradient
# Date implement: 20.06.2019
# --------------------------------------------------------------------------------
def evaluate_model(self, x, y, z):
energy_type = self.energy.type
mu = self.energy.mu
lmbda = self.energy.lam
dim = self.dim
if dim == 2:
Nx = len(x)
Ny = len(y)
xGrid, yGrid = np.meshgrid(x, y)
x1D = xGrid.flatten()
y1D = yGrid.flatten()
xy = np.concatenate((np.array([x1D]).T, np.array([y1D]).T),
axis=-1)
xy_tensor = torch.from_numpy(xy).float()
xy_tensor = xy_tensor.to(dev)
xy_tensor.requires_grad_(True)
# u_pred_torch = self.model(xy_tensor)
u_pred_torch = self.getU(xy_tensor)
duxdxy = grad(u_pred_torch[:, 0].unsqueeze(1),
xy_tensor,
torch.ones(xy_tensor.size()[0], 1, device=dev),
create_graph=True,
retain_graph=True)[0]
duydxy = grad(u_pred_torch[:, 1].unsqueeze(1),
xy_tensor,
torch.ones(xy_tensor.size()[0], 1, device=dev),
create_graph=True,
retain_graph=True)[0]
F11 = duxdxy[:, 0].unsqueeze(1) + 1
F12 = duxdxy[:, 1].unsqueeze(1) + 0
F21 = duydxy[:, 0].unsqueeze(1) + 0
F22 = duydxy[:, 1].unsqueeze(1) + 1
detF = F11 * F22 - F12 * F21
invF11 = F22 / detF
invF22 = F11 / detF
invF12 = -F12 / detF
invF21 = -F21 / detF
C11 = F11**2 + F21**2
C12 = F11 * F12 + F21 * F22
C21 = F12 * F11 + F22 * F21
C22 = F12**2 + F22**2
E11 = 0.5 * (C11 - 1)
E12 = 0.5 * C12
E21 = 0.5 * C21
E22 = 0.5 * (C22 - 1)
if energy_type == 'neohookean' and dim == 2:
P11 = mu * F11 + (lmbda * torch.log(detF) - mu) * invF11
P12 = mu * F12 + (lmbda * torch.log(detF) - mu) * invF21
P21 = mu * F21 + (lmbda * torch.log(detF) - mu) * invF12
P22 = mu * F22 + (lmbda * torch.log(detF) - mu) * invF22
else:
print("This energy model will be implemented later !!!")
exit()
S11 = invF11 * P11 + invF12 * P21
S12 = invF11 * P12 + invF12 * P22
S21 = invF21 * P11 + invF22 * P21
S22 = invF21 * P12 + invF22 * P22
u_pred = u_pred_torch.detach().cpu().numpy()
F11_pred = F11.detach().cpu().numpy()
F12_pred = F12.detach().cpu().numpy()
F21_pred = F21.detach().cpu().numpy()
F22_pred = F22.detach().cpu().numpy()
E11_pred = E11.detach().cpu().numpy()
E12_pred = E12.detach().cpu().numpy()
E21_pred = E21.detach().cpu().numpy()
E22_pred = E22.detach().cpu().numpy()
S11_pred = S11.detach().cpu().numpy()
S12_pred = S12.detach().cpu().numpy()
S21_pred = S21.detach().cpu().numpy()
S22_pred = S22.detach().cpu().numpy()
surUx = u_pred[:, 0].reshape(Ny, Nx, 1)
surUy = u_pred[:, 1].reshape(Ny, Nx, 1)
surUz = np.zeros([Nx, Ny, 1])
surE11 = E11_pred.reshape(Ny, Nx, 1)
surE12 = E12_pred.reshape(Ny, Nx, 1)
surE13 = np.zeros([Nx, Ny, 1])
surE21 = E21_pred.reshape(Ny, Nx, 1)
surE22 = E22_pred.reshape(Ny, Nx, 1)
surE23 = np.zeros([Nx, Ny, 1])
surE33 = np.zeros([Nx, Ny, 1])
surS11 = S11_pred.reshape(Ny, Nx, 1)
surS12 = S12_pred.reshape(Ny, Nx, 1)
surS13 = np.zeros([Nx, Ny, 1])
surS21 = S21_pred.reshape(Ny, Nx, 1)
surS22 = S22_pred.reshape(Ny, Nx, 1)
surS23 = np.zeros([Nx, Ny, 1])
surS33 = np.zeros([Nx, Ny, 1])
SVonMises = np.float64(
np.sqrt(0.5 * ((surS11 - surS22)**2 + (surS22)**2 +
(-surS11)**2 + 6 * (surS12**2))))
U = (np.float64(surUx), np.float64(surUy), np.float64(surUz))
return U, np.float64(surS11), np.float64(surS12), np.float64(surS13), np.float64(surS22), np.float64(
surS23), \
np.float64(surS33), np.float64(surE11), np.float64(surE12), \
np.float64(surE13), np.float64(surE22), np.float64(surE23), np.float64(surE33), np.float64(
SVonMises), \
np.float64(F11_pred), np.float64(F12_pred), np.float64(F21_pred), np.float64(F22_pred)
else:
Nx = len(x)
Ny = len(y)
Nz = len(z)
xGrid, yGrid, zGrid = np.meshgrid(x, y, z)
x1D = xGrid.flatten()
y1D = yGrid.flatten()
z1D = zGrid.flatten()
xyz = np.concatenate(
(np.array([x1D]).T, np.array([y1D]).T, np.array([z1D]).T),
axis=-1)
xyz_tensor = torch.from_numpy(xyz).float()
xyz_tensor = xyz_tensor.to(dev)
xyz_tensor.requires_grad_(True)
# u_pred_torch = self.model(xyz_tensor)
u_pred_torch = self.getU(xyz_tensor)
duxdxyz = grad(u_pred_torch[:, 0].unsqueeze(1),
xyz_tensor,
torch.ones(xyz_tensor.size()[0], 1, device=dev),
create_graph=True,
retain_graph=True)[0]
duydxyz = grad(u_pred_torch[:, 1].unsqueeze(1),
xyz_tensor,
torch.ones(xyz_tensor.size()[0], 1, device=dev),
create_graph=True,
retain_graph=True)[0]
duzdxyz = grad(u_pred_torch[:, 2].unsqueeze(1),
xyz_tensor,
torch.ones(xyz_tensor.size()[0], 1, device=dev),
create_graph=True,
retain_graph=True)[0]
F11 = duxdxyz[:, 0].unsqueeze(1) + 1
F12 = duxdxyz[:, 1].unsqueeze(1) + 0
F13 = duxdxyz[:, 2].unsqueeze(1) + 0
F21 = duydxyz[:, 0].unsqueeze(1) + 0
F22 = duydxyz[:, 1].unsqueeze(1) + 1
F23 = duydxyz[:, 2].unsqueeze(1) + 0
F31 = duzdxyz[:, 0].unsqueeze(1) + 0
F32 = duzdxyz[:, 1].unsqueeze(1) + 0
F33 = duzdxyz[:, 2].unsqueeze(1) + 1
detF = F11 * (F22 * F33 - F23 * F32) - F12 * (
F21 * F33 - F23 * F31) + F13 * (F21 * F32 - F22 * F31)
invF11 = (F22 * F33 - F23 * F32) / detF
invF12 = -(F12 * F33 - F13 * F32) / detF
invF13 = (F12 * F23 - F13 * F22) / detF
invF21 = -(F21 * F33 - F23 * F31) / detF
invF22 = (F11 * F33 - F13 * F31) / detF
invF23 = -(F11 * F23 - F13 * F21) / detF
invF31 = (F21 * F32 - F22 * F31) / detF
invF32 = -(F11 * F32 - F12 * F31) / detF
invF33 = (F11 * F22 - F12 * F21) / detF
C11 = F11**2 + F21**2 + F31**2
C12 = F11 * F12 + F21 * F22 + F31 * F32
C13 = F11 * F13 + F21 * F23 + F31 * F33
C21 = F12 * F11 + F22 * F21 + F32 * F31
C22 = F12**2 + F22**2 + F32**2
C23 = F12 * F13 + F22 * F23 + F32 * F33
C31 = F13 * F11 + F23 * F21 + F33 * F31
C32 = F13 * F12 + F23 * F22 + F33 * F32
C33 = F13**2 + F23**2 + F33**2
E11 = 0.5 * (C11 - 1)
E12 = 0.5 * C12
E13 = 0.5 * C13
E21 = 0.5 * C21
E22 = 0.5 * (C22 - 1)
E23 = 0.5 * C23
E31 = 0.5 * C31
E32 = 0.5 * C32
E33 = 0.5 * (C33 - 1)
if energy_type == 'neohookean' and dim == 3:
P11 = mu * F11 + (lmbda * torch.log(detF) - mu) * invF11
P12 = mu * F12 + (lmbda * torch.log(detF) - mu) * invF21
P13 = mu * F13 + (lmbda * torch.log(detF) - mu) * invF31
P21 = mu * F21 + (lmbda * torch.log(detF) - mu) * invF12
P22 = mu * F22 + (lmbda * torch.log(detF) - mu) * invF22
P23 = mu * F23 + (lmbda * torch.log(detF) - mu) * invF32
P31 = mu * F31 + (lmbda * torch.log(detF) - mu) * invF13
P32 = mu * F32 + (lmbda * torch.log(detF) - mu) * invF23
P33 = mu * F33 + (lmbda * torch.log(detF) - mu) * invF33
else:
print("This energy model will be implemented later !!!")
exit()
S11 = invF11 * P11 + invF12 * P21 + invF13 * P31
S12 = invF11 * P12 + invF12 * P22 + invF13 * P32
S13 = invF11 * P13 + invF12 * P23 + invF13 * P33
S21 = invF21 * P11 + invF22 * P21 + invF23 * P31
S22 = invF21 * P12 + invF22 * P22 + invF23 * P32
S23 = invF21 * P13 + invF22 * P23 + invF23 * P33
S31 = invF31 * P11 + invF32 * P21 + invF33 * P31
S32 = invF31 * P12 + invF32 * P22 + invF33 * P32
S33 = invF31 * P13 + invF32 * P23 + invF33 * P33
u_pred = u_pred_torch.detach().cpu().numpy()
F11_pred = F11.detach().cpu().numpy()
F12_pred = F12.detach().cpu().numpy()
F13_pred = F13.detach().cpu().numpy()
F21_pred = F21.detach().cpu().numpy()
F22_pred = F22.detach().cpu().numpy()
F23_pred = F23.detach().cpu().numpy()
F31_pred = F31.detach().cpu().numpy()
F32_pred = F32.detach().cpu().numpy()
F33_pred = F33.detach().cpu().numpy()
E11_pred = E11.detach().cpu().numpy()
E12_pred = E12.detach().cpu().numpy()
E13_pred = E13.detach().cpu().numpy()
E21_pred = E21.detach().cpu().numpy()
E22_pred = E22.detach().cpu().numpy()
E23_pred = E23.detach().cpu().numpy()
E31_pred = E31.detach().cpu().numpy()
E32_pred = E32.detach().cpu().numpy()
E33_pred = E33.detach().cpu().numpy()
S11_pred = S11.detach().cpu().numpy()
S12_pred = S12.detach().cpu().numpy()
S13_pred = S13.detach().cpu().numpy()
S21_pred = S21.detach().cpu().numpy()
S22_pred = S22.detach().cpu().numpy()
S23_pred = S23.detach().cpu().numpy()
S31_pred = S31.detach().cpu().numpy()
S32_pred = S32.detach().cpu().numpy()
S33_pred = S33.detach().cpu().numpy()
surUx = u_pred[:, 0].reshape(Ny, Nx, Nz)
surUy = u_pred[:, 1].reshape(Ny, Nx, Nz)
surUz = u_pred[:, 2].reshape(Ny, Nx, Nz)
surE11 = E11_pred.reshape(Ny, Nx, Nz)
surE12 = E12_pred.reshape(Ny, Nx, Nz)
surE13 = E13_pred.reshape(Ny, Nx, Nz)
surE21 = E21_pred.reshape(Ny, Nx, Nz)
surE22 = E22_pred.reshape(Ny, Nx, Nz)
surE23 = E23_pred.reshape(Ny, Nx, Nz)
surE31 = E31_pred.reshape(Ny, Nx, Nz)
surE32 = E32_pred.reshape(Ny, Nx, Nz)
surE33 = E33_pred.reshape(Ny, Nx, Nz)
surS11 = S11_pred.reshape(Ny, Nx, Nz)
surS12 = S12_pred.reshape(Ny, Nx, Nz)
surS13 = S13_pred.reshape(Ny, Nx, Nz)
surS21 = S21_pred.reshape(Ny, Nx, Nz)
surS22 = S22_pred.reshape(Ny, Nx, Nz)
surS23 = S23_pred.reshape(Ny, Nx, Nz)
surS31 = S31_pred.reshape(Ny, Nx, Nz)
surS32 = S32_pred.reshape(Ny, Nx, Nz)
surS33 = S33_pred.reshape(Ny, Nx, Nz)
SVonMises = np.float64(
np.sqrt(0.5 * ((surS11 - surS22)**2 + (surS22 - surS33)**2 +
(surS33 - surS11)**2 + 6 *
(surS12**2 + surS23**2 + surS31**2))))
U = (np.float64(surUx), np.float64(surUy), np.float64(surUz))
S1 = (np.float64(surS11), np.float64(surS12), np.float64(surS13))
S2 = (np.float64(surS21), np.float64(surS22), np.float64(surS23))
S3 = (np.float64(surS31), np.float64(surS32), np.float64(surS33))
E1 = (np.float64(surE11), np.float64(surE12), np.float64(surE13))
E2 = (np.float64(surE21), np.float64(surE22), np.float64(surE23))
E3 = (np.float64(surE31), np.float64(surE32), np.float64(surE33))
return U, np.float64(surS11), np.float64(surS12), np.float64(surS13), np.float64(surS22), np.float64(surS23), \
np.float64(surS33), np.float64(surE11), np.float64(surE12), \
np.float64(surE13), np.float64(surE22), np.float64(surE23), np.float64(surE33), np.float64(SVonMises), \
np.float64(F11_pred), np.float64(F12_pred), np.float64(F13_pred), \
np.float64(F21_pred), np.float64(F22_pred), np.float64(F23_pred), \
np.float64(F31_pred), np.float64(F32_pred), np.float64(F33_pred)
# --------------------------------------------------------------------------------
# method: loss sum for the energy part
# --------------------------------------------------------------------------------
@staticmethod
def loss_sum(tinput):
return torch.sum(tinput) / tinput.data.nelement()
# --------------------------------------------------------------------------------
# purpose: loss square sum for the boundary part
# --------------------------------------------------------------------------------
@staticmethod
def loss_squared_sum(tinput, target):
row, column = tinput.shape
loss = 0
for j in range(column):
loss += torch.sum((tinput[:, j] - target[:, j])**
2) / tinput[:, j].data.nelement()
return loss
def __init__(self, model, numIntType, energy, dim):
# self.data = data
self.model = MultiLayerNet(model[0], model[1], model[2])
self.model = self.model.to(dev)
self.intLoss = IntegrationLoss(numIntType, dim)
self.energy = EnergyModel(energy, dim)
class DeepEnergyMethod:
# Instance attributes
def __init__(self, model, numIntType, energy, dim):
# self.data = data
self.model = MultiLayerNet(model[0], model[1], model[2])
self.model = self.model.to(dev)
self.intLoss = IntegrationLoss(numIntType, dim)
self.energy = EnergyModel(energy, dim)
def train_model(self, shape, dxdydz, data, neumannBC, dirichletBC, LHD,
iteration, type_energy):
x = torch.from_numpy(data).float()
x = x.to(dev)
x.requires_grad_(True)
# get tensor inputs and outputs for boundary conditions
# -------------------------------------------------------------------------------
# Dirichlet BC
# -------------------------------------------------------------------------------
dirBC_coordinates = {} # declare a dictionary
dirBC_values = {} # declare a dictionary
dirBC_penalty = {}
for i, keyi in enumerate(dirichletBC):
dirBC_coordinates[i] = torch.from_numpy(
dirichletBC[keyi]['coord']).float().to(dev)
dirBC_values[i] = torch.from_numpy(
dirichletBC[keyi]['known_value']).float().to(dev)
dirBC_penalty[i] = torch.tensor(
dirichletBC[keyi]['penalty']).float().to(dev)
# -------------------------------------------------------------------------------
# Neumann BC
# -------------------------------------------------------------------------------
neuBC_coordinates = {} # declare a dictionary
neuBC_values = {} # declare a dictionary
neuBC_penalty = {}
for i, keyi in enumerate(neumannBC):
neuBC_coordinates[i] = torch.from_numpy(
neumannBC[keyi]['coord']).float().to(dev)
neuBC_coordinates[i].requires_grad_(True)
neuBC_values[i] = torch.from_numpy(
neumannBC[keyi]['known_value']).float().to(dev)
neuBC_penalty[i] = torch.tensor(
neumannBC[keyi]['penalty']).float().to(dev)
# ----------------------------------------------------------------------------------
# Minimizing loss function (energy and boundary conditions)
# ----------------------------------------------------------------------------------
optimizer = torch.optim.LBFGS(self.model.parameters(),
lr=0.5,
max_iter=20)
start_time = time.time()
energy_loss_array = []
boundary_loss_array = []
loss_array = []
for t in range(iteration):
# Zero gradients, perform a backward pass, and update the weights.
def closure():
it_time = time.time()
# ----------------------------------------------------------------------------------
# Internal Energy
# ----------------------------------------------------------------------------------
u_pred = self.model(x) # prediction of primary variables
u_pred.double()
# Strain energy equations = Internal Energy
storedEnergy = self.energy.getStoredEnergy(u_pred, x)
dim = len(dxdydz)
volume = LHD[0] * LHD[1] * LHD[2]
dom_crit = volume * self.loss_sum(storedEnergy)
if dim == 2:
internal2 = self.intLoss.approxIntegration(storedEnergy,
x,
shape=shape)
elif dim == 3:
internal2 = self.trapz3D(storedEnergy,
dx=dxdydz[0],
dy=dxdydz[1],
dz=dxdydz[2],
shape=shape)
# ----------------------------------------------------------------------------------
# External Energy
# ----------------------------------------------------------------------------------
bc_n_crit = torch.zeros(len(neuBC_coordinates))
external = torch.zeros(len(neuBC_coordinates))
external2 = torch.zeros(len(neuBC_coordinates))
for i, vali in enumerate(neuBC_coordinates):
if i == 0:
neu_u_pred = self.model(neuBC_coordinates[i])
area = LHD[1] * LHD[2]
fext = torch.bmm(
(neu_u_pred + neuBC_coordinates[i]).unsqueeze(1),
neuBC_values[i].unsqueeze(2))
bc_n_crit[i] = area * self.loss_sum(
fext) * neuBC_penalty[i]
if dim == 2:
external[i] = self.trapz1D(
fext, neuBC_coordinates[i][:, 1])
external2[i] = self.trapz1D(fext, dx=dxdydz[1])
elif dim == 3:
external2[i] = self.trapz2D(
fext,
dx=dxdydz[1],
dy=dxdydz[2],
shape=[shape[1], shape[2]])
else:
print(
"Not yet implemented !!! Please contact the author to ask !!!"
)
exit()
# ----------------------------------------------------------------------------------
# Dirichlet boundary conditions
# ----------------------------------------------------------------------------------
# boundary 1 x - direction
bc_u_crit = torch.zeros((len(dirBC_coordinates)))
for i, vali in enumerate(dirBC_coordinates):
dir_u_pred = self.model(dirBC_coordinates[i])
bc_u_crit[i] = self.loss_squared_sum(
dir_u_pred, dirBC_values[i]) * dirBC_penalty[i]
# ----------------------------------------------------------------------------------
# Compute and print loss
# ----------------------------------------------------------------------------------
energy_loss = internal2 - torch.sum(external2)
boundary_loss = torch.sum(bc_u_crit)
loss = energy_loss + boundary_loss
optimizer.zero_grad()
loss.backward()
print(
'Iter: %d Loss: %.9e Energy: %.9e Boundary: %.9e Time: %.3e'
% (t + 1, loss.item(), energy_loss.item(),
boundary_loss.item(), time.time() - it_time))
energy_loss_array.append(energy_loss.data)
boundary_loss_array.append(boundary_loss.data)
loss_array.append(loss.data)
return loss
optimizer.step(closure)
elapsed = time.time() - start_time
print('Training time: %.4f' % elapsed)
def __trapz(self, y, x=None, dx=1.0, axis=-1):
# y = np.asanyarray(y)
if x is None:
d = dx
else:
d = x[1:] - x[0:-1]
# reshape to correct shape
shape = [1] * y.ndimension()
shape[axis] = d.shape[0]
d = d.reshape(shape)
nd = y.ndimension()
slice1 = [slice(None)] * nd
slice2 = [slice(None)] * nd
slice1[axis] = slice(1, None)
slice2[axis] = slice(None, -1)
ret = torch.sum(d * (y[tuple(slice1)] + y[tuple(slice2)]) / 2.0, axis)
return ret
def trapz1D(self, y, x=None, dx=1.0, axis=-1):
y1D = y.flatten()
if x is not None:
x1D = x.flatten()
return self.__trapz(y1D, x1D, dx=dx, axis=axis)
else:
return self.__trapz(y1D, dx=dx)
def trapz2D(self, f, xy=None, dx=None, dy=None, shape=None):
f2D = f.reshape(shape[0], shape[1])
if dx is None and dy is None:
x = xy[:, 0].flatten().reshape(shape[0], shape[1])
y = xy[:, 1].flatten().reshape(shape[0], shape[1])
return self.__trapz(self.__trapz(f2D, y[0, :]), x[:, 0])
else:
return self.__trapz(self.__trapz(f2D, dx=dy), dx=dx)
def trapz3D(self, f, xyz=None, dx=None, dy=None, dz=None, shape=None):
f3D = f.reshape(shape[0], shape[1], shape[2])
if dx is None and dy is None and dz is None:
print("dxdydz - trapz3D - Need to implement !!!")
else:
return self.__trapz(self.__trapz(self.__trapz(f3D, dx=dz), dx=dy),
dx=dx)
# --------------------------------------------------------------------------------
# Purpose: After training model, predict solutions with some data input
# --------------------------------------------------------------------------------
def evaluate_model(self, x_space, y_space, z_space):
surfaceUx = np.zeros([len(y_space), len(x_space), len(z_space)])
surfaceUy = np.zeros([len(y_space), len(x_space), len(z_space)])
surfaceUz = np.zeros([len(y_space), len(x_space), len(z_space)])
for i, y in enumerate(y_space):
for j, x in enumerate(x_space):
for k, z in enumerate(z_space):
t_tensor = torch.tensor([x, y, z]).unsqueeze(0)
tRes = self.model(t_tensor).detach().cpu().numpy()[0]
surfaceUx[i][j][k] = tRes[0]
surfaceUy[i][j][k] = tRes[1]
surfaceUz[i][j][k] = tRes[2]
return surfaceUx, surfaceUy, surfaceUz
# --------------------------------------------------------------------------------
# Purpose: After training model, predict solutions with some data input in 2D
# --------------------------------------------------------------------------------
def evaluate_model2d(self, x_space, y_space):
z_space = np.array([0])
surfaceUx = np.zeros([len(y_space), len(x_space), len(z_space)])
surfaceUy = np.zeros([len(y_space), len(x_space), len(z_space)])
surfaceUz = np.zeros([len(y_space), len(x_space), len(z_space)])
for i, y in enumerate(y_space):
for j, x in enumerate(x_space):
for k, z in enumerate(z_space):
t_tensor = torch.tensor([x, y]).unsqueeze(0)
tRes = self.model(t_tensor).detach().cpu().numpy()[0]
surfaceUx[i][j][k] = tRes[0]
surfaceUy[i][j][k] = tRes[1]
surfaceUz[i][j][k] = 0
return surfaceUx, surfaceUy, surfaceUz
# --------------------------------------------------------------------------------
# Purpose: Evaluate data
# --------------------------------------------------------------------------------
def evaluate_data(self, data):
new_position = np.zeros(np.shape(data))
disp = np.zeros(np.shape(data))
for i, vali in enumerate(data):
t_tensor = torch.tensor([vali[0], vali[1]]).unsqueeze(0)
tRes = self.model(t_tensor).detach().cpu().numpy()[0]
disp[i, :] = np.copy(tRes)
new_position[i, :] = vali + tRes
return new_position, disp
# --------------------------------------------------------------------------------
# method: loss sum for the energy part
# --------------------------------------------------------------------------------
@staticmethod
def loss_sum(tinput):
return torch.sum(tinput) / tinput.data.nelement()
# --------------------------------------------------------------------------------
# purpose: loss square sum for the boundary part
# --------------------------------------------------------------------------------
@staticmethod
def loss_squared_sum(tinput, target):
row, column = tinput.shape
loss = 0
for j in range(column):
loss += torch.sum((tinput[:, j] - target[:, j])**
2) / tinput[:, j].data.nelement()
return loss
