def main():
sys.excepthook = excepthook
QApplication.setDesktopSettingsAware(False)
QApplication.setStyle(QStyleFactory.create("Fusion"))
app = QApplication(sys.argv)
app.setAttribute(QtCore.Qt.AA_UseHighDpiPixmaps)
sys.stderr.write("\n")
cli = BaseCLI(
"DERIVA Authentication Agent",
"For more information see: https://github.com/informatics-isi-edu/deriva-qt",
VERSION)
cli.parser.add_argument(
"--cookie-persistence",
action="store_true",
help="Enable cookie and local storage persistence for QtWebEngine.")
args = cli.parse_cli()
config = read_config(args.config_file,
create_default=False) if args.config_file else None
authWindow = AuthWindow(config,
args.credential_file,
cookie_persistence=args.cookie_persistence)
authWindow.show()
ret = app.exec_()
return ret
def main():
cli = BaseCLI("annotation rollback tool", None, version=__version__, hostname_required=True)
cli.parser.add_argument("--catalog", default=1, metavar="<1>", help="Catalog number. Default: 1")
cli.parser.add_argument("--snapshot", metavar="<snapshot ID", help="Catalog snapshot ID. Example: 2QG-VWP6-0YG0")
args = cli.parse_cli()
credential = get_credential(args.host, args.credential_file)
rollback_annotation(args.host, args.catalog, snaptime=args.snapshot, credential=credential)
def main():
logger = logging.getLogger(__name__)
logger.setLevel("WARNING")
cli = BaseCLI(__name__,
"Create a sitemap from a table specified on the command line or a set of tables from a config file",
__version__, hostname_required=True)
cli.remove_options(["--credential-file", "--token", "--oauth2-token"])
cli.parser.add_argument("--catalog", default=1, metavar="<1>", help="Catalog number")
cli.parser.add_argument("-p", "--priority", type=float,
help="A floating-point number between 0.0 and 1.0 indicating the table's priority")
cli.parser.add_argument("-s", "--schema", help="the name of the schema of the (single) table to include")
cli.parser.add_argument("-t", "--table", help="the name of the (single) table to include")
args = cli.parse_cli()
if args.priority is not None:
if args.priority < 0 or args.priority > 1:
logger.error("priority should be a floating-point number between 0 and 1")
sys.exit(1)
if not ((args.schema and args.table) or args.config_file):
logger.error("must specify either a schema and table or a config file")
sys.exit(1)
sb = SitemapBuilder("https", args.host, args.catalog)
if args.schema and args.table:
sb.add_table_spec(args.schema, args.table, priority=args.priority)
if args.config_file:
rows = json.load(open(args.config_file))
for row in rows:
if row.get("schema") is None or row.get("table") is None:
logger.warning("malformed entry in {f}: schema or table is missing. Skipping".format(f=args.config_file))
next
if row.get("priority") is None:
priority = args.priority
else:
try:
priority = float(row.get("priority"))
if priority < 0 or priority > 1:
logger.warning("bad priority '{p}' - should be a floating-point number between 0 and 1. Ignoring".format(p=priority))
priority = args.priority
except ValueError:
logger.warning("malformed priority '{p}' - should be a floating-point number between 0 and 1. Ignoring".format(p=row.get("priority")))
priority = args.priority
sb.add_table_spec(row["schema"], row["table"], priority=priority)
sb.write_sitemap(sys.stdout)
return 0
for row in data:
if row.get("Description") is None:
row["Description"] = row["Name"]
if __name__ == '__main__':
cli = BaseCLI("load tables into demo server", None, hostname_required=True)
cli.parser.add_argument("--directory",
"-d",
type=str,
help="Parent directory of data files",
default="./data")
cli.parser.add_argument("--all",
"-a",
action="store_const",
const=True,
help="load all tables")
cli.parser.add_argument("catalog", type=int)
cli.parser.add_argument("--table",
type=str,
action="append",
help="table(s) to load")
args = cli.parse_cli()
credentials = get_credential(args.host)
dl = DemoLoad(args.host, args.catalog, credentials, args.directory)
if not (args.table or args.all):
print("Specify --all or at least one table")
sys.exit(1)
dl.load(args.table if args.table else None)
