def dump(experiments, reflections, params):
filename = params.hklout
entry = get_entry(filename, "w")
experiments = nx_mx.dump(entry, experiments, params)
nx_reflections.dump(entry, reflections, experiments)
def dump(experiments, reflections, filename):
entry = get_entry(filename, "w")
experiments = nx_mx.dump(entry, experiments)
nx_reflections.dump(entry, reflections, experiments)
def dump(experiments, reflections, filename):
from dials.util.nexus import nx_reflections, nx_mx
entry = get_entry(filename, "w")
experiments = nx_mx.dump(entry, experiments)
nx_reflections.dump(entry, reflections, experiments)
def dump(experiments, reflections, filename): from dials.util.nexus import nx_diffraction, nx_mx entry = get_entry(filename, "w") experiments = nx_mx.dump(entry, experiments) nx_diffraction.dump(entry, reflections, experiments)
from __future__ import division
if __name__ == "__main__":
import sys
from dxtbx.model.experiment_list import ExperimentListFactory
experiments = ExperimentListFactory.from_json_file(sys.argv[1])
assert len(experiments) == 1
assert len(experiments[0].imageset) == 1
from dials.util.nexus import get_entry
from dials.util.nexus import nx_mx
entry = get_entry("data.h5", "w")
experiment_names = nx_mx.dump(entry, experiments)
from dials.array_family import flex
data = experiments[0].imageset.get_raw_data(0)[0]
height, width = data.all()
data.reshape(flex.grid(1, height, width))
nx_data = entry[experiment_names[0]].create_group("data")
nx_data.attrs["NX_class"] = "NXdata"
nx_data["data"] = data.as_numpy_array()
entry[experiment_names[0]]["names"] = ["test_cbf"
] + ["" for i in range(199)]