def test_orthanc_upload():
O = Orthanc()
O.clear()
ROOTP = "~/data/dcm/ibis2"
D = DicomDirectory(ROOTP)
d = D.get("IM1", binary=True)
print(d.summary())
O.put(d)
g = O.get(d.oid(), dlvl=DLv.INSTANCE)
Dixel.comparator = CTy.METADATA
assert d == g
e = Dixel.from_child(d)
h = O.get(e.oid(), dlvl=DLv.SERIES)
assert e == h
f = Dixel.from_child(e)
i = O.get(f.oid(), dlvl=DLv.STUDY)
assert f == i
archive: Orthanc = None,
clear_source: bool = False):
for oid in queue.inventory():
anonymize_and_send_w_registry(oid, queue, reg, archive, clear_source)
def review_patient_ids(queue: Orthanc):
for study_oid in queue.inventory():
study_dx = O.get(study_oid)
pt_id = best_pt_id(study_dx)
print("------------------------")
print(f"Patient ID: {study_dx.tags.get('PatientID')}")
print(f"Patient Name: {study_dx.tags.get('PatientName')}")
print(f"Best Patient ID: {pt_id}")
if __name__ == "__main__":
O = Orthanc(url=ORTHANC_QUEUE_URL)
P = Orthanc(url=ORTHANC_PEER_URL)
if CLEAR_TARGET:
input("Are you sure that you want to clear the target archive?")
P.clear()
H = HashRegistry(cache_file=CACHE_FILE)
# anonymize_and_send_w_registry(STUDY_OID, O, H, P, clear_source=CLEAR_SOURCE)
anon_and_push_all(O, H, P, clear_source=CLEAR_SOURCE)
# review_patient_ids(O)
print(f"Registered {n} files")
H.put(dx)
if upload and O is not None:
o += 1
if o % ANNOUNCEMENT_INTERVAL == 0:
print(f"Uploaded {o} files")
O.put(dx)
toc = time.time()
print(f"----------------------------")
print(f"Checked {m} files")
print(f"Registered new {n} instances")
print(f"Uploaded {o} instances")
print(f"Elapsed time: {toc-tic:.2f} ({max([n,1])/(toc-tic):.2f}dx/s)")
print(f"----------------------------")
H.shelve()
pprint(H.find(q={"dlvl": DLv.STUDY}))
if __name__ == "__main__":
D = DicomDirectory(root=ROOT_PATH)
H = HashRegistry(clear_cache=CLEAR_HASHES, cache_file=CACHE_FILE)
O = Orthanc(url=ORTHANC_URL)
if CLEAR_DICOM:
input("Are you sure that you want to clear the queue?")
O.clear()
register_path(D, H, O, upload=UPLOAD_DICOM)