elif args.verbose:
log.basicConfig(format="%(levelname)s: %(message)s", level=log.INFO)
else:
log.basicConfig(format="%(levelname)s: %(message)s")
if args.negotiator and not args.outputXLSX:
raise Exception(
'Negotiator-compatible output must produce Excel output, hence -X or --output-XLSX must be provided, too'
)
# Main code
dir = Directory(purgeCaches=args.purgeCaches, debug=args.debug, pp=pp)
log.info('Total biobanks: ' + str(dir.getBiobanksCount()))
log.info('Total collections: ' + str(dir.getCollectionsCount()))
if args.negotiator:
contactsToCollections = {}
collectionsToContacts = {}
contactsToEmails = {}
for collection in dir.getCollections():
log.debug("Analyzing collection " + collection['id'])
collectionId = collection['id']
biobankId = dir.getCollectionBiobankId(collection['id'])
biobank = dir.getBiobankById(biobankId)
if 'contact' in collection:
contactId = collection['contact']['id']
contactEmail = collection['contact']['email']
if contactId not in contactsToEmails:
