def load_tests(loader, tests, ignore):
tests.addTests(doctest.DocTestSuite(ngsutils.support.stats))
return tests
def load_tests(loader, tests, ignore):
tests.addTests(doctest.DocTestSuite())
return tests
def get_suite():
"""Get unittest suite for this module"""
import doctest, sys
return doctest.DocTestSuite(sys.modules[__name__])
def load_tests(loader, tests, pattern):
tests.addTest(doctest.DocTestSuite())
return tests
def test_suite():
return unittest.TestSuite((doctest.DocTestSuite(setUp=setUp,
tearDown=tearDown), ))
def suite():
suite = unittest.TestSuite()
suite.addTest(doctest.DocTestSuite(TemplateLoader.__module__))
suite.addTest(unittest.makeSuite(TemplateLoaderTestCase, 'test'))
return suite
def load_tests(loader, tests, ignore):
tests.addTests(doctest.DocTestSuite(ObjectFactoryMixin))
return tests
def test_suite():
optionflags = (doctest.ELLIPSIS | doctest.REPORT_NDIFF
| doctest.NORMALIZE_WHITESPACE)
return unittest.TestSuite([
doctest.DocTestSuite(optionflags=optionflags, checker=checker),
])
def load_tests(loader, tests, ignore):
tests.addTests(doctest.DocTestSuite(rdSubstructLibrary))
return tests
def test_suite():
optionflags = (doctest.ELLIPSIS |
doctest.NORMALIZE_WHITESPACE |
doctest.REPORT_ONLY_FIRST_FAILURE)
return doctest.DocTestSuite(setUp=setUp, tearDown=tearDown,
optionflags=optionflags)
def doctests():
# type: () -> unittest.TestSuite
import doctest
return doctest.DocTestSuite()
def load_tests(*args):
from test import test_pdb
suites = [unittest.makeSuite(PdbTestCase), doctest.DocTestSuite(test_pdb)]
return unittest.TestSuite(suites)
The config file's encoding, defaults to :data:`default_encoding`.
Examples
--------
>>> get_val("junk") is None
True
>>> set_val("junk", "random")
>>> get_val("junk")
u'random'
>>> set_val("junk", None)
>>> get_val("junk") is None
True
"""
if os.path.exists(path()):
if encoding == None:
encoding = default_encoding
config = ConfigParser.ConfigParser()
f = codecs.open(path(), 'r', encoding)
config.readfp(f, path())
f.close()
try:
return config.get(section, name)
except ConfigParser.NoOptionError:
return default
else:
return default
if libbe.TESTING == True:
suite = doctest.DocTestSuite()
def run_docstring_tests(module):
runner = TextTestRunner()
s = runner.run(doctest.DocTestSuite(module))
assert 0 == len(s.failures)
for path, module in walk_modules():
add_module(module, path)
add_module('setup', 'setup.py')
if not modules:
sys.exit('No modules found matching %s' %
' '.join(allowed_modules))
suite = unittest.TestSuite()
tests_count = 0
modules_count = 0
for m, path in sorted(modules):
with open(path, 'r') as f:
contents = f.read()
if re.search(r'^\s*>>> ', contents, re.M):
try:
s = doctest.DocTestSuite(m, extraglobs=globs)
test_count = len(s._tests) # pylint: disable=W0212
print('%s (from %s): %s tests' % (m, path, test_count))
suite.addTest(s)
modules_count += 1
tests_count += test_count
except Exception:
traceback.print_exc()
sys.stderr.write('Failed to process %s\n\n' % path)
print('Total: %s tests in %s modules' % (tests_count, modules_count))
runner = unittest.TextTestRunner(verbosity=2)
runner.run(suite)
finally:
os.chdir(cwd)
def load_tests(loader, tests, ignore):
tests.addTests(doctest.DocTestSuite(encrypt))
tests.addTests(doctest.DocTestSuite(game))
return tests
def test_suite():
suite = unittest.TestSuite()
suite.addTest(
doctest.DocTestSuite('Products.eXtremeManagement.browser.gantt',
optionflags=OPTIONFLAGS))
return suite
import doctest
import unittest
import os
import vcf2hl7v2
from os.path import join, dirname
import shutil
import logging
import filecmp
suite = doctest.DocTestSuite(vcf2hl7v2)
class TestTemporary(unittest.TestCase):
@classmethod
def setUpClass(self):
self.TEST_RESULT_DIR = os.path.join(
os.path.dirname(__file__), 'output')
if os.path.exists(self.TEST_RESULT_DIR):
shutil.rmtree(self.TEST_RESULT_DIR)
os.mkdir(self.TEST_RESULT_DIR)
@classmethod
def tearDownClass(self):
shutil.rmtree(self.TEST_RESULT_DIR)
def test_NB6TK328(self):
o_vcf_2_hl7v2 = vcf2hl7v2.Converter(
vcf_filename=os.path.join(
os.path.dirname(__file__),
'NB6TK328_filtered.vcf'
),
if os.path.exists(self.rustc_stamp_path):
os.unlink(self.rustc_stamp_path)
self.assertTrue(self.build.program_out_of_date(self.rustc_stamp_path))
def test_dates_are_different(self):
"""Return True when the dates are different"""
with open(self.rustc_stamp_path, "w") as rustc_stamp:
rustc_stamp.write("2017-06-14")
self.assertTrue(self.build.program_out_of_date(self.rustc_stamp_path))
def test_same_dates(self):
"""Return False both dates match"""
with open(self.rustc_stamp_path, "w") as rustc_stamp:
rustc_stamp.write("2017-06-15")
self.assertFalse(self.build.program_out_of_date(self.rustc_stamp_path))
if __name__ == '__main__':
SUITE = unittest.TestSuite()
TEST_LOADER = unittest.TestLoader()
SUITE.addTest(doctest.DocTestSuite(bootstrap))
SUITE.addTests([
TEST_LOADER.loadTestsFromTestCase(Stage0DataTestCase),
TEST_LOADER.loadTestsFromTestCase(VerifyTestCase),
TEST_LOADER.loadTestsFromTestCase(ProgramOutOfDate)
])
RUNNER = unittest.TextTestRunner(stream=sys.stdout, verbosity=2)
result = RUNNER.run(SUITE)
sys.exit(0 if result.wasSuccessful() else 1)
def load_tests(loader, tests, ignore):
tests.addTests(
doctest.DocTestSuite('plainbox.impl.xparsers',
optionflags=doctest.REPORT_NDIFF))
return tests
def load_tests(loader, tests, ignore):
tests.addTests(doctest.DocTestSuite(representation))
return tests
def load_tests(loader, tests, ignore):
tests.addTests(doctest.DocTestSuite(preprocessing))
return tests
def test_suite():
return unittest.TestSuite(
[doctest.DocTestSuite(module=module) for module in modules])
def suite():
suite = unittest.TestSuite()
suite.addTest(doctest.DocTestSuite(mofile, optionflags=doctest.ELLIPSIS))
suite.addTest(unittest.makeSuite(ReadMoTestCase))
suite.addTest(unittest.makeSuite(WriteMoTestCase))
return suite
def suitefn():
suite = unittest.TestSuite()
suite.addTests(doctest.DocTestSuite(diskarray))
suite.addTests(doctest.DocTestSuite(vararray))
return suite
def load_tests(loader, tests, ignore):
tests.addTests(doctest.DocTestSuite(solists.move_to_front_list))
return tests
def make_test_suite():
"""Load unittests placed in here and below, then return a
TestSuite object of those."""
path = os.path.abspath(__file__).rsplit(os.sep + 'tests', 1)[0]
# path to actual code that we want to test
sys.path.append('../')
sys.path.append('../../')
top_testdir = os.path.join(path, 'tests') # 'tests', 'unittests'
testdirs = getSubDirectories(top_testdir)
# testdirs.append('./')
print "scan directories: ", testdirs
# Initialize the testsuite to add to
suite = TestSuite()
optionflags = doctest.ELLIPSIS | doctest.NORMALIZE_WHITESPACE
for testdir in testdirs:
# All unittest modules have to start with 'test_' and have to be, of
# course, python files
module_names = [
f[:-3] for f in os.listdir(testdir)
if f.startswith('test_') and f.endswith('.py')
]
if not module_names:
logging.info('No tests found in %s' % testdir)
continue
# "Magically" import the tests package and its test-modules that we've
# found
sub_path = os.path.relpath(testdir, top_testdir).split(os.sep)
test_package_path = '.'.join(sub_path)
test_package = __import__(test_package_path, fromlist=module_names)
# Put the test modules in a list that can be passed to the testsuite
modules = (getattr(test_package, n) for n in module_names)
modules = [(m, missingDependencies(m)) for m in modules]
untests = [(m, md) for m, md in modules if md]
modules = [m for m, md in modules if not md]
# Print out modules that are missing dependencies
for module, miss_dep in untests: # Mr Dep is not around, though
logging.warning('Module %s is missing dependencies: %s' %
(module.__name__, ', '.join(miss_dep)))
# Print out a list of tests that are found
for m in modules:
logging.info('Tests found: %s' % m.__name__)
# Build up the testsuite
suite.addTests([TestLoader().loadTestsFromModule(m) for m in modules])
# Add doctests from the unittest modules to the suite
for mod in modules:
try:
suite.addTest(
doctest.DocTestSuite(mod, optionflags=optionflags))
except ValueError:
# No tests found.
pass
return suite
def runTest(self, name):
from Bio import MissingExternalDependencyError
result = self._makeResult()
output = StringIO()
# Restore the language and thus default encoding (in case a prior
# test changed this, e.g. to help with detecting command line tools)
global SYSTEM_LANG
os.environ['LANG'] = SYSTEM_LANG
# Always run tests from the Tests/ folder where run_tests.py
# should be located (as we assume this with relative paths etc)
os.chdir(self.testdir)
try:
stdout = sys.stdout
sys.stdout = output
if name.startswith("test_"):
sys.stderr.write("%s ... " % name)
# It's either a unittest or a print-and-compare test
loader = unittest.TestLoader()
suite = loader.loadTestsFromName(name)
if hasattr(loader, "errors") and loader.errors:
# New in Python 3.5, don't always get an exception anymore
# Instead this is a list of error messages as strings
for msg in loader.errors:
if "Bio.MissingExternalDependencyError: " in msg or \
"Bio.MissingPythonDependencyError: " in msg:
# Remove the traceback etc
msg = msg[msg.find("Bio.Missing"):]
msg = msg[msg.find("Error: "):]
sys.stderr.write("skipping. %s\n" % msg)
return True
# Looks like a real failure
sys.stderr.write("loading tests failed:\n")
for msg in loader.errors:
sys.stderr.write("%s\n" % msg)
return False
if suite.countTestCases() == 0:
# This is a print-and-compare test instead of a
# unittest-type test.
test = ComparisonTestCase(name, output)
suite = unittest.TestSuite([test])
else:
# It's a doc test
sys.stderr.write("%s docstring test ... " % name)
module = __import__(name, fromlist=name.split("."))
suite = doctest.DocTestSuite(module,
optionflags=doctest.ELLIPSIS)
del module
suite.run(result)
if self.testdir != os.path.abspath("."):
sys.stderr.write("FAIL\n")
result.stream.write(result.separator1 + "\n")
result.stream.write("ERROR: %s\n" % name)
result.stream.write(result.separator2 + "\n")
result.stream.write("Current directory changed\n")
result.stream.write("Was: %s\n" % self.testdir)
result.stream.write("Now: %s\n" % os.path.abspath("."))
os.chdir(self.testdir)
if not result.wasSuccessful():
result.printErrors()
return False
elif result.wasSuccessful():
sys.stderr.write("ok\n")
return True
else:
sys.stderr.write("FAIL\n")
result.printErrors()
return False
except MissingExternalDependencyError as msg:
# Seems this isn't always triggered on Python 3.5,
# exception messages can be in loader.errors instead.
sys.stderr.write("skipping. %s\n" % msg)
return True
except Exception as msg:
# This happened during the import
sys.stderr.write("ERROR\n")
result.stream.write(result.separator1 + "\n")
result.stream.write("ERROR: %s\n" % name)
result.stream.write(result.separator2 + "\n")
result.stream.write(traceback.format_exc())
return False
except KeyboardInterrupt as err:
# Want to allow this, and abort the test
# (see below for special case)
raise err
except:
# This happens in Jython with java.lang.ClassFormatError:
# Invalid method Code length ...
sys.stderr.write("ERROR\n")
result.stream.write(result.separator1 + "\n")
result.stream.write("ERROR: %s\n" % name)
result.stream.write(result.separator2 + "\n")
result.stream.write(traceback.format_exc())
return False
finally:
sys.stdout = stdout
# Running under PyPy we were leaking file handles...
gc.collect()
def doctests():
import doctest
return doctest.DocTestSuite()
def mainTest(*testClasses, **kwargs):
'''
Takes as its arguments modules (or a string 'noDocTest' or 'verbose')
and runs all of these modules through a unittest suite
Unless 'noDocTest' is passed as a module, a docTest
is also performed on `__main__`, hence the name "mainTest".
If 'moduleRelative' (a string) is passed as a module, then
global variables are preserved.
Run example (put at end of your modules):
::
import unittest
class Test(unittest.TestCase):
def testHello(self):
hello = "Hello"
self.assertEqual("Hello", hello)
import music21
if __name__ == '__main__':
music21.mainTest(Test)
This module tries to fix up some differences between python2 and python3 so
that the same doctests can work.
'''
runAllTests = True
# default -- is fail fast.
failFast = bool(kwargs.get('failFast', True))
if failFast:
optionflags = (doctest.ELLIPSIS | doctest.NORMALIZE_WHITESPACE
| doctest.REPORT_ONLY_FIRST_FAILURE)
else:
optionflags = (doctest.ELLIPSIS | doctest.NORMALIZE_WHITESPACE)
globs = None
if ('noDocTest' in testClasses or 'noDocTest' in sys.argv
or 'nodoctest' in sys.argv
or bool(kwargs.get('noDocTest', False))):
skipDoctest = True
else:
skipDoctest = False
# start with doc tests, then add unit tests
if skipDoctest:
# create a test suite for storage
s1 = unittest.TestSuite()
else:
# create test suite derived from doc tests
# here we use '__main__' instead of a module
if ('moduleRelative' in testClasses or 'moduleRelative' in sys.argv
or bool(kwargs.get('moduleRelative', False))):
pass
else:
for di in defaultImports:
globs = __import__(di).__dict__.copy()
if ('importPlusRelative' in testClasses
or 'importPlusRelative' in sys.argv
or bool(kwargs.get('importPlusRelative', False))):
globs.update(globals())
try:
s1 = doctest.DocTestSuite(
'__main__',
globs=globs,
optionflags=optionflags,
)
except ValueError as ve: # no docstrings
print("Problem in docstrings [usually a missing r value before " +
"the quotes:] {0}".format(str(ve)))
s1 = unittest.TestSuite()
verbosity = 1
if ('verbose' in testClasses or 'verbose' in sys.argv
or bool(kwargs.get('verbose', False))):
verbosity = 2 # this seems to hide most display
displayNames = False
if ('list' in sys.argv or 'display' in sys.argv
or bool(kwargs.get('display', False))
or bool(kwargs.get('list', False))):
displayNames = True
runAllTests = False
runThisTest = None
if len(sys.argv) == 2:
arg = sys.argv[1].lower()
if arg not in ('list', 'display', 'verbose', 'nodoctest'):
# run a test directly named in this module
runThisTest = sys.argv[1]
if bool(kwargs.get('runTest', False)):
runThisTest = kwargs.get('runTest', False)
# -f, --failfast
if ('onlyDocTest' in sys.argv or 'onlyDocTest' in testClasses
or bool(kwargs.get('onlyDocTest', False))):
testClasses = [] # remove cases
for t in testClasses:
if not isinstance(t, str):
if displayNames is True:
for tName in unittest.defaultTestLoader.getTestCaseNames(t):
print('Unit Test Method: %s' % tName)
if runThisTest is not None:
tObj = t() # call class
# search all names for case-insensitive match
for name in dir(tObj):
if (name.lower() == runThisTest.lower()
or name.lower() == ('test' + runThisTest.lower())
or name.lower()
== ('xtest' + runThisTest.lower())):
runThisTest = name
break
if hasattr(tObj, runThisTest):
print('Running Named Test Method: %s' % runThisTest)
tObj.setUp()
getattr(tObj, runThisTest)()
runAllTests = False
break
else:
print(
'Could not find named test method: %s, running all tests'
% runThisTest)
# normally operation collects all tests
s2 = unittest.defaultTestLoader.loadTestsFromTestCase(t)
s1.addTests(s2)
### Add _DOC_ATTR tests...
if not skipDoctest:
stacks = inspect.stack()
if len(stacks) > 1:
outerFrameTuple = stacks[1]
else:
outerFrameTuple = stacks[0]
outerFrame = outerFrameTuple[0]
outerFilename = outerFrameTuple[1]
localVariables = list(outerFrame.f_locals.values())
addDocAttrTestsToSuite(s1, localVariables, outerFilename, globs,
optionflags)
if runAllTests is True:
fixDoctests(s1)
runner = unittest.TextTestRunner()
runner.verbosity = verbosity
unused_testResult = runner.run(s1)
