예제 #1
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def test_rotate_earth2principal(make_data=False):

    td_rdi = load('RDI_test01_rotate_inst2earth.nc')
    td_sig = load('BenchFile01_rotate_inst2earth.nc')
    td_awac = tr.dat_awac.copy(deep=True)

    td_rdi.attrs['principal_heading'] = calc_principal_heading(
        td_rdi.vel.mean('range'))
    td_sig.attrs['principal_heading'] = calc_principal_heading(
        td_sig.vel.mean('range'))
    td_awac.attrs['principal_heading'] = calc_principal_heading(
        td_awac.vel.mean('range'), tidal_mode=False)
    rotate2(td_rdi, 'principal', inplace=True)
    rotate2(td_sig, 'principal', inplace=True)
    rotate2(td_awac, 'principal', inplace=True)

    if make_data:
        save(td_rdi, 'RDI_test01_rotate_earth2principal.nc')
        save(td_sig, 'BenchFile01_rotate_earth2principal.nc')
        save(td_awac, 'AWAC_test01_earth2principal.nc')
        return

    cd_rdi = load('RDI_test01_rotate_earth2principal.nc')
    cd_sig = load('BenchFile01_rotate_earth2principal.nc')
    cd_awac = load('AWAC_test01_earth2principal.nc')

    assert_allclose(td_rdi, cd_rdi, atol=1e-5)
    assert_allclose(td_awac, cd_awac, atol=1e-5)
    assert_allclose(td_sig, cd_sig, atol=1e-5)
예제 #2
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def test_rotate_beam2inst():
    td = load('vector_data01_rotate_inst2beam.nc')
    rotate2(td, 'inst', inplace=True)
    tdm = load('vector_data_imu01_rotate_inst2beam.nc')
    rotate2(tdm, 'inst', inplace=True)

    cd = tr.dat.copy(deep=True)
    cdm = tr.dat_imu.copy(deep=True)

    assert_allclose(td, cd, atol=1e-6)
    assert_allclose(tdm, cdm, atol=1e-6)
예제 #3
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def test_rotate_earth2inst():

    td_rdi = load('RDI_test01_rotate_inst2earth.nc')
    rotate2(td_rdi, 'inst', inplace=True)
    tdwr2 = load('winriver02_rotate_ship2earth.nc')
    rotate2(tdwr2, 'inst', inplace=True)

    td_awac = tr.dat_awac.copy(deep=True)
    rotate2(td_awac, 'inst', inplace=True)  # AWAC is in earth coords
    td_sig = load('BenchFile01_rotate_inst2earth.nc')
    rotate2(td_sig, 'inst', inplace=True)
    td_sig_i = load('Sig1000_IMU_rotate_inst2earth.nc')
    rotate2(td_sig_i, 'inst', inplace=True)

    cd_rdi = load('RDI_test01_rotate_beam2inst.nc')
    cd_wr2 = tr.dat_wr2
    # ship and inst are considered equivalent in dolfy
    cd_wr2.attrs['coord_sys'] = 'inst'
    cd_awac = load('AWAC_test01_earth2inst.nc')
    cd_sig = load('BenchFile01_rotate_beam2inst.nc')
    cd_sig_i = load('Sig1000_IMU_rotate_beam2inst.nc')

    assert_allclose(td_rdi, cd_rdi, atol=1e-5)
    assert_allclose(tdwr2, cd_wr2, atol=1e-5)
    assert_allclose(td_awac, cd_awac, atol=1e-5)
    assert_allclose(td_sig, cd_sig, atol=1e-5)
    # known failure due to orientmat, see test_vs_nortek
    #assert_allclose(td_sig_i, cd_sig_i, atol=1e-3)
    npt.assert_allclose(td_sig_i.accel.values,
                        cd_sig_i.accel.values,
                        atol=1e-3)
예제 #4
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def test_calc_func(make_data=False):
    dat_vec = adv_setup(tv)
    test_ds = type(dat_vec.dat1)()
    test_ds_demean = type(dat_vec.dat1)()
    test_ds_dif = type(dat_vec.dat1)()
    c = dat_vec.avg_tool

    dat_adp = adp_setup(tr)
    c2 = dat_adp.avg_tool
    test_ds_adp = type(dat_adp.dat)()

    test_ds['coh'] = c.calc_coh(
        dat_vec.dat1.vel[0], dat_vec.dat1.vel[1], n_fft_coh=dat_vec.dat1.fs)
    test_ds['pang'] = c.calc_phase_angle(
        dat_vec.dat1.vel[0], dat_vec.dat1.vel[1], n_fft_coh=dat_vec.dat1.fs)
    test_ds['xcov'] = c.calc_xcov(dat_vec.dat1.vel[0], dat_vec.dat1.vel[1])
    test_ds['acov'] = c.calc_acov(dat_vec.dat1.vel)
    test_ds['tke_vec'] = c.calc_tke(dat_vec.dat1.vel)
    test_ds['stress'] = c.calc_stress(dat_vec.dat1.vel)
    test_ds['psd'] = c.calc_psd(dat_vec.dat1.vel)
    test_ds['csd'] = c.calc_csd(dat_vec.dat1.vel)

    test_ds_demean['tke_vec'] = c.calc_tke(dat_vec.dat1.vel, detrend=False)
    test_ds_demean['stress'] = c.calc_stress(dat_vec.dat1.vel, detrend=False)

    # Different lengths
    test_ds_dif['coh_dif'] = c.calc_coh(dat_vec.dat1.vel, dat_vec.dat2.vel)
    test_ds_dif['pang_dif'] = c.calc_phase_angle(
        dat_vec.dat1.vel, dat_vec.dat2.vel)

    # Test ADCP single vector spectra, cross-spectra to test radians code
    test_ds_adp['psd_b5'] = c2.calc_psd(
        dat_adp.dat.vel_b5.isel(range_b5=5), window='hamm')
    test_ds_adp['tke_b5'] = c2.calc_tke(dat_adp.dat.vel_b5)
    test_ds_adp['csd'] = c2.calc_csd(dat_adp.dat.vel.isel(dir=slice(0, 3), range=0),
                                     freq_units='rad', window='hamm')

    if make_data:
        save(test_ds, 'vector_data01_func.nc')
        save(test_ds_dif, 'vector_data01_funcdif.nc')
        save(test_ds_demean, 'vector_data01_func_demean.nc')
        save(test_ds_adp, 'BenchFile01_func.nc')
        return

    assert_allclose(test_ds, load('vector_data01_func.nc'), atol=1e-6)
    assert_allclose(test_ds_dif, load('vector_data01_funcdif.nc'), atol=1e-6)
    assert_allclose(test_ds_demean, load(
        'vector_data01_func_demean.nc'), atol=1e-6)
    assert_allclose(test_ds_adp, load('BenchFile01_func.nc'), atol=1e-6)
예제 #5
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def test_rotate_earth2inst():
    td = load('vector_data01_rotate_inst2earth.nc')
    rotate2(td, 'inst', inplace=True)
    tdm = load('vector_data_imu01_rotate_inst2earth.nc')
    rotate2(tdm, 'inst', inplace=True)

    cd = tr.dat.copy(deep=True)
    cdm = tr.dat_imu.copy(deep=True)
    # The heading/pitch/roll data gets modified during rotation, so it
    # doesn't go back to what it was.
    cdm = cdm.drop_vars(['heading', 'pitch', 'roll'])
    tdm = tdm.drop_vars(['heading', 'pitch', 'roll'])

    assert_allclose(td, cd, atol=1e-6)
    assert_allclose(tdm, cdm, atol=1e-6)
예제 #6
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def test_orient_filter(make_data=False):
    td_sig = tp.dat_sig_i.copy(deep=True)
    td_sig = apm.clean.medfilt_orient(td_sig)
    apm.rotate2(td_sig, 'earth', inplace=True)

    td_rdi = tp.dat_rdi.copy(deep=True)
    td_rdi = apm.clean.medfilt_orient(td_rdi)
    apm.rotate2(td_rdi, 'earth', inplace=True)

    if make_data:
        save(td_sig, 'Sig1000_IMU_ofilt.nc')
        save(td_rdi, 'RDI_test01_ofilt.nc')
        return

    assert_allclose(td_sig, load('Sig1000_IMU_ofilt.nc'), atol=1e-6)
    assert_allclose(td_rdi, load('RDI_test01_ofilt.nc'), atol=1e-6)
예제 #7
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def test_rotate_inst2beam(make_data=False):
    td = tr.dat.copy(deep=True)
    rotate2(td, 'beam', inplace=True)
    tdm = tr.dat_imu.copy(deep=True)
    rotate2(tdm, 'beam', inplace=True)

    if make_data:
        save(td, 'vector_data01_rotate_inst2beam.nc')
        save(tdm, 'vector_data_imu01_rotate_inst2beam.nc')
        return

    cd = load('vector_data01_rotate_inst2beam.nc')
    cdm = load('vector_data_imu01_rotate_inst2beam.nc')

    assert_allclose(td, cd, atol=1e-6)
    assert_allclose(tdm, cdm, atol=1e-6)
예제 #8
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def test_shortcuts(make_data=False):
    test_dat = adv_setup(tv)

    if make_data:
        save(test_dat.short, 'vector_data01_u.nc')
        return

    assert_allclose(test_dat.short, load('vector_data01_u.nc'), atol=1e-6)
예제 #9
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def test_do_func(make_data=False):
    dat_vec = adv_setup(tv)
    adat_vec = dat_vec.avg_tool.do_avg(dat_vec.dat1)
    adat_vec = dat_vec.avg_tool.do_var(dat_vec.dat1, adat_vec)
    adat_vec = dat_vec.avg_tool.do_tke(dat_vec.dat1, adat_vec)

    dat_sig = adp_setup(tr)
    adat_sig = dat_sig.avg_tool.do_avg(dat_sig.dat)
    adat_sig = dat_sig.avg_tool.do_var(dat_sig.dat, adat_sig)

    if make_data:
        save(adat_vec, 'vector_data01_avg.nc')
        save(adat_sig, 'BenchFile01_avg.nc')
        return

    assert_allclose(adat_vec, load('vector_data01_avg.nc'), atol=1e-6)
    assert_allclose(adat_sig, load('BenchFile01_avg.nc'), atol=1e-6)
예제 #10
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def test_rotate_inst2beam(make_data=False):

    td = load('RDI_test01_rotate_beam2inst.nc')
    rotate2(td, 'beam', inplace=True)
    td_awac = load('AWAC_test01_earth2inst.nc')
    rotate2(td_awac, 'beam', inplace=True)
    td_sig = load('BenchFile01_rotate_beam2inst.nc')
    rotate2(td_sig, 'beam', inplace=True)
    td_sig_i = load('Sig1000_IMU_rotate_beam2inst.nc')
    rotate2(td_sig_i, 'beam', inplace=True)
    td_sig_ie = load('Sig500_Echo_earth2inst.nc')
    rotate2(td_sig_ie, 'beam', inplace=True)

    if make_data:
        save(td_awac, 'AWAC_test01_inst2beam.nc')
        save(td_sig_ie, 'Sig500_Echo_inst2beam.nc')
        return

    cd_td = tr.dat_rdi.copy(deep=True)
    cd_awac = load('AWAC_test01_inst2beam.nc')
    cd_sig = tr.dat_sig.copy(deep=True)
    cd_sig_i = tr.dat_sig_i.copy(deep=True)
    cd_sig_ie = load('Sig500_Echo_inst2beam.nc')

    # # The reverse RDI rotation doesn't work b/c of NaN's in one beam
    # # that propagate to others, so we impose that here.
    cd_td['vel'].values[:, np.isnan(cd_td['vel'].values).any(0)] = np.NaN

    assert_allclose(td, cd_td, atol=1e-5)
    assert_allclose(td_awac, cd_awac, atol=1e-5)
    assert_allclose(td_sig, cd_sig, atol=1e-5)
    assert_allclose(td_sig_i, cd_sig_i, atol=1e-5)
    assert_allclose(td_sig_ie, cd_sig_ie, atol=1e-5)
예제 #11
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def test_rotate_earth2principal(make_data=False):
    td = load('vector_data01_rotate_inst2earth.nc')
    td.attrs['principal_heading'] = calc_principal_heading(td['vel'])
    rotate2(td, 'principal', inplace=True)
    tdm = load('vector_data_imu01_rotate_inst2earth.nc')
    tdm.attrs['principal_heading'] = calc_principal_heading(tdm['vel'])
    rotate2(tdm, 'principal', inplace=True)

    if make_data:
        save(td, 'vector_data01_rotate_earth2principal.nc')
        save(tdm, 'vector_data_imu01_rotate_earth2principal.nc')
        return

    cd = load('vector_data01_rotate_earth2principal.nc')
    cdm = load('vector_data_imu01_rotate_earth2principal.nc')

    assert_allclose(td, cd, atol=1e-6)
    assert_allclose(tdm, cdm, atol=1e-6)
예제 #12
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def test_sep_probes(make_data=False):
    tdm = tv.dat_imu.copy(deep=True)
    tdm = avm.correct_motion(tdm, separate_probes=True)

    if make_data:
        save(tdm, 'vector_data_imu01_mcsp.nc')
        return

    assert_allclose(tdm, load('vector_data_imu01_mcsp.nc'), atol=1e-7)
예제 #13
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def test_GN2002(make_data=False):
    td = tv.dat.copy(deep=True)
    td_imu = tv.dat_imu.copy(deep=True)

    td.vel[0, 50:65] = np.nan  # fudge up some data
    mask = avm.clean.GN2002(td.vel, npt=20)
    td['vel'] = avm.clean.clean_fill(td.vel, mask, method='cubic')

    mask = avm.clean.GN2002(td_imu.vel, npt=20)
    td_imu['vel'] = avm.clean.clean_fill(td_imu.vel, mask, method='cubic')

    if make_data:
        save(td, 'vector_data01_GN.nc')
        save(td_imu, 'vector_data_imu01_GN.nc')
        return

    assert_allclose(td, load('vector_data01_GN.nc'), atol=1e-6)
    assert_allclose(td_imu, load('vector_data_imu01_GN.nc'), atol=1e-6)
예제 #14
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def test_clean_upADCP(make_data=False):
    td_awac = tp.dat_awac.copy(deep=True)
    td_sig = tp.dat_sig_tide.copy(deep=True)

    apm.clean.find_surface_from_P(td_awac, salinity=30)
    td_awac = apm.clean.nan_beyond_surface(td_awac)

    apm.clean.set_range_offset(td_sig, 0.6)
    apm.clean.find_surface_from_P(td_sig, salinity=31)
    td_sig = apm.clean.nan_beyond_surface(td_sig)
    td_sig = apm.clean.correlation_filter(td_sig, thresh=50)

    if make_data:
        save(td_awac, 'AWAC_test01_clean.nc')
        save(td_sig, 'Sig1000_tidal_clean.nc')
        return

    assert_allclose(td_awac, load('AWAC_test01_clean.nc'), atol=1e-6)
    assert_allclose(td_sig, load('Sig1000_tidal_clean.nc'), atol=1e-6)
예제 #15
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def test_q_hpr():
    dat = load('Sig1000_IMU.nc')

    dcm = quaternion2orient(dat.quaternions)

    assert_allclose(
        dat.orientmat,
        dcm,
        atol=5e-4,
        err_msg="Disagreement b/t quaternion-calc'd & HPR-calc'd orientmat")
예제 #16
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def test_range_limit(make_data=False):
    td = tv.dat_imu.copy(deep=True)

    mask = avm.clean.range_limit(td.vel)
    td['vel'] = avm.clean.clean_fill(td.vel, mask, method='cubic')

    if make_data:
        save(td, 'vector_data01_rclean.nc')
        return

    assert_allclose(td, load('vector_data01_rclean.nc'), atol=1e-6)
예제 #17
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def test_spike_thresh(make_data=False):
    td = tv.dat_imu.copy(deep=True)

    mask = avm.clean.spike_thresh(td.vel, thresh=10)
    td['vel'] = avm.clean.clean_fill(td.vel, mask, method='cubic')

    if make_data:
        save(td, 'vector_data01_sclean.nc')
        return

    assert_allclose(td, load('vector_data01_sclean.nc'), atol=1e-6)
예제 #18
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def test_rotate_inst2earth(make_data=False):
    td = tr.dat.copy(deep=True)
    rotate2(td, 'earth', inplace=True)
    tdm = tr.dat_imu.copy(deep=True)
    rotate2(tdm, 'earth', inplace=True)
    tdo = tr.dat.copy(deep=True)
    omat = tdo['orientmat']
    tdo = rotate2(tdo.drop_vars('orientmat'), 'earth', inplace=False)
    tdo['orientmat'] = omat

    if make_data:
        save(td, 'vector_data01_rotate_inst2earth.nc')
        save(tdm, 'vector_data_imu01_rotate_inst2earth.nc')
        return

    cd = load('vector_data01_rotate_inst2earth.nc')
    cdm = load('vector_data_imu01_rotate_inst2earth.nc')

    assert_allclose(td, cd, atol=1e-6)
    assert_allclose(tdm, cdm, atol=1e-6)
    assert_allclose(tdo, cd, atol=1e-6)
예제 #19
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def test_motion_adv(make_data=False):
    tdm = tv.dat_imu.copy(deep=True)
    tdm = avm.correct_motion(tdm)

    # user added metadata
    tdmj = tv.dat_imu_json.copy(deep=True)
    tdmj = avm.correct_motion(tdmj)

    # set declination and then correct
    tdm10 = tv.dat_imu.copy(deep=True)
    tdm10.velds.set_declination(10.0, inplace=True)
    tdm10 = avm.correct_motion(tdm10)

    # test setting declination to 0 doesn't affect correction
    tdm0 = tv.dat_imu.copy(deep=True)
    tdm0.velds.set_declination(0.0, inplace=True)
    tdm0 = avm.correct_motion(tdm0)
    tdm0.attrs.pop('declination')
    tdm0.attrs.pop('declination_in_orientmat')

    # test motion-corrected data rotation
    tdmE = tv.dat_imu.copy(deep=True)
    tdmE.velds.set_declination(10.0, inplace=True)
    tdmE.velds.rotate2('earth', inplace=True)
    tdmE = avm.correct_motion(tdmE)

    if make_data:
        save(tdm, 'vector_data_imu01_mc.nc')
        save(tdm10, 'vector_data_imu01_mcDeclin10.nc')
        save(tdmj, 'vector_data_imu01-json_mc.nc')
        return

    cdm10 = load('vector_data_imu01_mcDeclin10.nc')

    assert_allclose(tdm, load('vector_data_imu01_mc.nc'), atol=1e-7)
    assert_allclose(tdm10, tdmj, atol=1e-7)
    assert_allclose(tdm0, tdm, atol=1e-7)
    assert_allclose(tdm10, cdm10, atol=1e-7)
    assert_allclose(tdmE, cdm10, atol=1e-7)
    assert_allclose(tdmj, load('vector_data_imu01-json_mc.nc'), atol=1e-7)
예제 #20
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def test_heading(make_data=False):
    td = tr.dat_imu.copy(deep=True)

    head, pitch, roll = orient2euler(td)
    td['pitch'].values = pitch
    td['roll'].values = roll
    td['heading'].values = head

    if make_data:
        save(td, 'vector_data_imu01_head_pitch_roll.nc')
        return
    cd = load('vector_data_imu01_head_pitch_roll.nc')

    assert_allclose(td, cd, atol=1e-6)
예제 #21
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def test_rotate_beam2inst(make_data=False):

    td_rdi = rotate2(tr.dat_rdi, 'inst', inplace=False)
    td_sig = rotate2(tr.dat_sig, 'inst', inplace=False)
    td_sig_i = rotate2(tr.dat_sig_i, 'inst', inplace=False)
    td_sig_ieb = rotate2(tr.dat_sig_ieb, 'inst', inplace=False)

    if make_data:
        save(td_rdi, 'RDI_test01_rotate_beam2inst.nc')
        save(td_sig, 'BenchFile01_rotate_beam2inst.nc')
        save(td_sig_i, 'Sig1000_IMU_rotate_beam2inst.nc')
        save(td_sig_ieb, 'VelEchoBT01_rotate_beam2inst.nc')
        return

    cd_rdi = load('RDI_test01_rotate_beam2inst.nc')
    cd_sig = load('BenchFile01_rotate_beam2inst.nc')
    cd_sig_i = load('Sig1000_IMU_rotate_beam2inst.nc')
    cd_sig_ieb = load('VelEchoBT01_rotate_beam2inst.nc')

    assert_allclose(td_rdi, cd_rdi, atol=1e-5)
    assert_allclose(td_sig, cd_sig, atol=1e-5)
    assert_allclose(td_sig_i, cd_sig_i, atol=1e-5)
    assert_allclose(td_sig_ieb, cd_sig_ieb, atol=1e-5)
예제 #22
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def test_rotate_earth2principal_set_declination():
    declin = 3.875
    td = load('vector_data01_rotate_inst2earth.nc')
    td0 = td.copy(deep=True)

    td.attrs['principal_heading'] = calc_principal_heading(td['vel'])
    rotate2(td, 'principal', inplace=True)
    set_declination(td, declin, inplace=True)
    rotate2(td, 'earth', inplace=True)

    set_declination(td0, -1, inplace=True)
    set_declination(td0, declin, inplace=True)
    td0.attrs['principal_heading'] = calc_principal_heading(td0['vel'])
    rotate2(td0, 'earth', inplace=True)

    assert_allclose(td0, td, atol=1e-6)
예제 #23
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def test_rotate_inst2earth(make_data=False):
    # AWAC & Sig500 are loaded in earth
    td_awac = tr.dat_awac.copy(deep=True)
    rotate2(td_awac, 'inst', inplace=True)
    td_sig_ie = tr.dat_sig_ie.copy(deep=True)
    rotate2(td_sig_ie, 'inst', inplace=True)
    td_sig_o = td_sig_ie.copy(deep=True)

    td = rotate2(tr.dat_rdi, 'earth', inplace=False)
    tdwr2 = rotate2(tr.dat_wr2, 'earth', inplace=False)
    td_sig = load('BenchFile01_rotate_beam2inst.nc')
    rotate2(td_sig, 'earth', inplace=True)
    td_sig_i = load('Sig1000_IMU_rotate_beam2inst.nc')
    rotate2(td_sig_i, 'earth', inplace=True)

    if make_data:
        save(td_awac, 'AWAC_test01_earth2inst.nc')
        save(td, 'RDI_test01_rotate_inst2earth.nc')
        save(tdwr2, 'winriver02_rotate_ship2earth.nc')
        save(td_sig, 'BenchFile01_rotate_inst2earth.nc')
        save(td_sig_i, 'Sig1000_IMU_rotate_inst2earth.nc')
        save(td_sig_ie, 'Sig500_Echo_earth2inst.nc')
        return

    td_awac = rotate2(load('AWAC_test01_earth2inst.nc'),
                      'earth',
                      inplace=False)
    td_sig_ie = rotate2(load('Sig500_Echo_earth2inst.nc'),
                        'earth',
                        inplace=False)
    td_sig_o = rotate2(td_sig_o.drop_vars('orientmat'), 'earth', inplace=False)

    cd = load('RDI_test01_rotate_inst2earth.nc')
    cdwr2 = load('winriver02_rotate_ship2earth.nc')
    cd_sig = load('BenchFile01_rotate_inst2earth.nc')
    cd_sig_i = load('Sig1000_IMU_rotate_inst2earth.nc')

    assert_allclose(td, cd, atol=1e-5)
    assert_allclose(tdwr2, cdwr2, atol=1e-5)
    assert_allclose(td_awac, tr.dat_awac, atol=1e-5)
    assert_allclose(td_sig, cd_sig, atol=1e-5)
    assert_allclose(td_sig_i, cd_sig_i, atol=1e-5)
    assert_allclose(td_sig_ie, tr.dat_sig_ie, atol=1e-5)
    npt.assert_allclose(td_sig_o.vel, tr.dat_sig_ie.vel, atol=1e-5)
예제 #24
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def test_adv_turbulence(make_data=False):
    dat = tv.dat.copy(deep=True)
    bnr = avm.ADVBinner(n_bin=20.0, fs=dat.fs)
    tdat = bnr(dat)
    acov = bnr.calc_acov(dat.vel)

    assert_identical(tdat, avm.calc_turbulence(dat, n_bin=20.0, fs=dat.fs))

    tdat['LT83'] = bnr.calc_epsilon_LT83(tdat.psd, tdat.velds.U_mag)
    tdat['SF'] = bnr.calc_epsilon_SF(dat.vel[0], tdat.velds.U_mag)
    tdat['TE01'] = bnr.calc_epsilon_TE01(dat, tdat)
    tdat['L'] = bnr.calc_L_int(acov, tdat.vel)

    if make_data:
        save(tdat, 'vector_data01_bin.nc')
        return

    assert_allclose(tdat, load('vector_data01_bin.nc'), atol=1e-6)
예제 #25
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def test_clean_downADCP(make_data=False):
    td = tp.dat_sig_ie.copy(deep=True)

    # First remove bad data
    td['vel'] = apm.clean.val_exceeds_thresh(td.vel, thresh=3)
    td['vel'] = apm.clean.fillgaps_time(td.vel)
    td['vel_b5'] = apm.clean.fillgaps_time(td.vel_b5)
    td['vel'] = apm.clean.fillgaps_depth(td.vel)
    td['vel_b5'] = apm.clean.fillgaps_depth(td.vel_b5)

    # Then clean below seabed
    apm.clean.set_range_offset(td, 0.5)
    apm.clean.find_surface(td, thresh=10, nfilt=3)
    td = apm.clean.nan_beyond_surface(td)

    if make_data:
        save(td, 'Sig500_Echo_clean.nc')
        return

    assert_allclose(td, load('Sig500_Echo_clean.nc'), atol=1e-6)
예제 #26
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def test_pr_declination():
    # Test to confirm that pitch and roll don't change when you set
    # declination
    declin = 15.37

    dat = load('vector_data_imu01.nc')
    h0, p0, r0 = orient2euler(dat['orientmat'].values)

    set_declination(dat, declin, inplace=True)
    h1, p1, r1 = orient2euler(dat['orientmat'].values)

    assert_allclose(p0,
                    p1,
                    atol=1e-5,
                    err_msg="Pitch changes when setting declination")
    assert_allclose(r0,
                    r1,
                    atol=1e-5,
                    err_msg="Roll changes when setting declination")
    assert_allclose(h0 + declin,
                    h1,
                    atol=1e-5,
                    err_msg="incorrect heading change when "
                    "setting declination")
예제 #27
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파일: test_api.py 프로젝트: jmcvey3/dolfyn
from dolfyn.tests.base import load_netcdf as load, rfnm


vec = load('vector_data01.nc')
sig = load('BenchFile01.nc')
rdi = load('RDI_test01.nc')


def test_repr(make_data=False):

    _str = []
    for dat, fnm in [(vec, rfnm('vector_data01.repr.txt')),
                     (sig, rfnm('BenchFile01.repr.txt')),
                     (rdi, rfnm('RDI_test01.repr.txt')), ]:
        _str = dat.velds.__repr__()
        if make_data:
            with open(fnm, 'w') as fl:
                fl.write(_str)
        else:
            with open(fnm, 'r') as fl:
                test_str = fl.read()
            assert test_str == _str