def main():
conf_path = Path.home().joinpath(gconf.CONFIG_FOLDER)
conf_file = conf_path.joinpath(CONFIG_FILENAME)
# create config path
Path.mkdir(conf_path, exist_ok=True)
# ask info to user before creating the config file
server = input(
"Which elabFTW server will you connect to (e.g. elab.example.org)? "
)
token = input(
"Enter your API access token (create one in user settings on website): "
)
verify = input(
"Verify the certificate? (default: yes) ([yes]/no) "
)
veriflag = verify != "no"
# test the connection
urlapi = f"https://{server}/api/v1/"
manager = elabapy.Manager(endpoint=urlapi, token=token, verify=veriflag)
try:
manager.get_items_types()
except HTTPError as e:
print(e)
sys.exit(1)
info = {"endpoint": urlapi, "token": token, "domain_name": server}
with conf_file.open("w") as f:
yaml.dump(info, f)
print(f"Successfully connected, wrote out config file: {conf_file}")
def initialize():
try:
with open(configfile) as f:
config = yaml.load(f, Loader=yaml.FullLoader)
except Exception:
print(
"Unable to find or open config file. Run configure_elabftw first.")
return
manager = elabapy.Manager(endpoint=config["endpoint"],
token=config["token"])
return manager
def initialize():
try:
with open(configfile) as f:
config = yaml.load(f, Loader=yaml.FullLoader)
except Exception:
print("Unable to find or open config file. "
"Run configure_elabftw first.")
sys.exit(1)
manager = elabapy.Manager(endpoint=config["endpoint"],
token=config["token"])
try:
manager.get_items_types()
except HTTPError as e:
print(e)
sys.exit(1)
return manager
import sys
import elabapy
import datetime
import operator
import yaml
print("Uploading the .nd file to elabftw. Stay put.")
# add double \ to avoid unicode decode error
workdir = "D:\\Users"
today = datetime.date.today()
kdate = today.strftime('%Y%m%d')
# read config
config = yaml.safe_load(open("config.yml"))
# init manager from elabapy
manager = elabapy.Manager(token=config["token"], endpoint=config["endpoint"])
def getLastNdFile():
""""
Get the path of the latest .nd file saved in Users folder
"""
ndFiles = {}
for dirpath, dirnames, filenames in os.walk(workdir):
for file in filenames:
curpath = os.path.join(dirpath, file)
fileModified = datetime.datetime.fromtimestamp(
os.path.getmtime(curpath))
if curpath.endswith('.nd'):
ndFiles[curpath] = fileModified
# now we have a dict full of nd files paths
import elabapy
import datetime
manager = elabapy.Manager(
endpoint="https://127.0.0.1/api/v1/",
token=
"e7bcd146e669745f3918ffde74a7b38910962121a6e67308b71790823ffe2d58beab48e7f2912b05af26",
verify=False)
def ask(filenames, body=""):
if (input("Would you like to record this run? [y/N]: ") == 'y'):
title = input("Enter a title: ")
make(filenames, title, body)
def make(filenames, title, body):
response = manager.create_experiment()
id = int(response['id'])
print(f"Created experiment with id {id}.")
params = {
"title": title,
"date": datetime.datetime.today().strftime("%Y%m%d"),
"body": body
}
manager.post_experiment(id, params)
for filename in filenames:
with open(filename, 'rb') as myfile:
manager.upload_to_experiment(id, {'file': myfile})