def demonstration():
'''
A test call to use ConfFile.
We import the class.
Then we initialise a instance of ConfFile with
the configuration file "default.conf"
'''
from eoldas_ConfFile import ConfFile
print "Testing ConfFile class with conf file default.conf"
self = ConfFile('default.conf')
# no log has been set up, so logging info
# is stored in self.storelog
print "logger info:"
print self.storelog
def demonstration():
'''
An example of running EOLDAS
'''
from eoldas_ConfFile import ConfFile
print "Testing ConfFile class with conf file eoldas_Test1"
logdir = 'test/eoldas_Test/log'
logfile = 'log.dat'
thisname = 'eoldas_Test1'
conffile = ['semid_default.conf']
#['Obs1.conf']
datadir = ['.']
confs = ConfFile(conffile,\
logdir=logdir,\
logfile=logfile,\
datadir=datadir)
solver = eoldas_Solver(confs,thisname=thisname,\
logdir=logdir,\
logfile=logfile,\
datadir=datadir)
for i in xrange(len(solver.confs.infos)):
solver.prep(i)
# try an initial calculation
J = solver.cost()
J_prime = solver.cost_df(None)
# run the solver
solver.solver()
# Hessian
solver.uncertainty()
# write out the state
solver.write()
# write out any fwd modelling of observations
solver.writeHx()
def __init__(self,
args,
name=None,
general=None,
log=False,
logger=None,
outdir=".",
getopdir=False,
parse=True):
"""
Initialise parser class.
This sets up the class defaults.
Options:
general=general: this over-rides and defaults with values
set in parser general can be of the form:
1. class ParamStorage (i.e. the same form
as self.general)
2. a command line list (where the first
item in the list is ignored
3. a string containing a set of command line general
See self.parse() for more details on general
2 and 3 as these simply make a call to tha
method.
log=True If log is set to True, then logging starts
when this class is instanced.
Note that the logfile and logdir might
change if subsequent calls to Parser.parse()
are made
"""
if type(args) == str:
args = args.split()
self.dolog = log
self.log = log
self.name = args[0]
self.args = args[1:]
self.fullargs = args
self.store_fullargs = args
if name == None:
import time
thistime = str(time.time())
name = type(self).__name__
name = "%s.%s" % (name, thistime)
self.thisname = name
# find the following flags:
# --conf | -c : conf
# --datadir : datadir
datadir = [".","~/.eoldas",sys.path[0]+'/../bin',sys.path[0]+'/../confs',\
sys.path[0]+'/../system_confs',sys.path[0]+'/../eoldaslib']
conf = "default.conf"
logfile = None
logdir = "."
self.top = ParamStorage()
self.top.general = ParamStorage()
self.top.general.__helper__ = ParamStorage()
self.top.general.__default__ = ParamStorage()
self.top.general.__extras__ = ParamStorage()
self.top.general.conf = []
for i in xrange(len(self.args)):
theseargs = self.args[i].split('=')
if theseargs[0] == "--conf":
conf = theseargs[1]
self.top.general.conf.append(conf)
elif theseargs[0][0:2] == "-c":
if len(theseargs) > 2:
conf = theseargs[0][2:]
else:
conf = self.args[i + 1]
self.top.general.conf.append(conf)
elif theseargs[0] == "--datadir":
datadir1 = theseargs[1].replace('[','').\
replace(']','').split()
[datadir1.append(datadir[i]) for i in \
xrange(len(datadir))]
datadir = datadir1
elif theseargs[0] == "--logfile":
logfile = theseargs[1]
elif theseargs[0] == "--logdir":
logdir = theseargs[1]
elif theseargs[0] == "--outdir":
outdir = theseargs[1]
if self.top.general.conf == []:
self.top.general.conf = conf
if logfile == None:
logfile = conf.replace('conf', 'log')
self.top.general.here = os.getcwd()
self.top.general.datadir = datadir
self.top.general.logfile = logfile
self.top.general.logdir = logdir
self.top.general.outdir = outdir
# add here to datadir
# in addition to '.' to take account of the change of directory
self.top.general.datadir = self.__add_here_to_datadir(\
self.top.general.here,self.top.general.datadir)
self.top.general.datadir = self.__add_here_to_datadir(\
self.top.general.outdir,self.top.general.datadir)
# cd to where the output is to be
self.__cd(self.top.general.outdir)
# set up the default command line options
self.default_loader()
# update with anything passed here
if general and type(general) == ParamStorage: self.top.update(\
self.__unload(general),combine=True)
# read the conf files to get any cmd line options
self.logger = sortlog(self,self.top.general.logfile,logger,name=self.thisname,\
logdir=self.top.general.logdir)
self.config = ConfFile(self.top.general.conf,name=self.thisname+'.config',\
loaders=self.loaders,datadir=self.top.\
general.datadir,logger=self.logger,logdir=self.top.general.logdir,\
logfile=self.top.general.logfile)
if len(self.config.configs) == 0:
this = "Warning: Nothing doing ... you haven't set any configuration",\
self.config.storelog
try:
self.logger(this)
except:
print "Called with args:"
print "eoldas", self.args
pass
raise Exception(this)
# now loaders contains all of the defaults set here
# plus those from the config (config opver-rides defaults here)
self.loaders = self.config.loaders
# now convert loaders into parser information
self.parseLoader(self.loaders)
self.parse(self.fullargs)
if general and type(general) == ParamStorage:
self.top.update(self.__unload(general), combine=True)
if general and type(general) == str:
self.parse(general.split())
if general and type(general) == list:
self.parse(general)
# now update the info in self.config
for i in self.config.infos:
i.update(self.top, combine=True)
# so now all terms in self.config.infos
# contain information from the config file, updated by
# the cmd line
i.logger = self.logger
i.log()
# move the information up a level
self.infos = self.config.infos
self.configs = self.config.configs
self.config_log = self.config.storelog
#if getopdir:
# self.sortnames()
self.config.loglist(self.top)
#del(self.config.infos)
#del(self.config.configs)
#del(self.config)
self.__cd(self.top.general.here)