def test_multiple_mappings(self):
trait1 = trait.Trait("barrett esophagus/esophageal adenocarcinoma",
"http://www.ebi.ac.uk/efo/EFO_0000478",
"esophageal adenocarcinoma", 1)
trait2 = trait.Trait("barrett esophagus/esophageal adenocarcinoma",
"http://www.ebi.ac.uk/efo/EFO_0000280",
"Barrett's esophagus", 1)
test_trait_list = clinvar_to_evidence_strings.create_trait_list(
["barrett esophagus/esophageal adenocarcinoma"], MAPPINGS.trait_2_efo, 1)
self.assertEqual([trait1, trait2], test_trait_list)
def test_multiple_mappings(self):
trait1 = trait.Trait("barrett esophagus/esophageal adenocarcinoma",
"http://www.ebi.ac.uk/efo/EFO_0000478",
"esophageal adenocarcinoma", 1)
trait2 = trait.Trait("barrett esophagus/esophageal adenocarcinoma",
"http://www.ebi.ac.uk/efo/EFO_0000280",
"Barrett's esophagus", 1)
test_trait_list = clinvar_to_evidence_strings.create_trait_list(
["barrett esophagus/esophageal adenocarcinoma"],
MAPPINGS.trait_2_efo, 1)
self.assertEqual([trait1, trait2], test_trait_list)
def test_return_none(self):
none_trait = clinvar_to_evidence_strings.create_trait_list(
["not a real trait"], MAPPINGS.trait_2_efo, 9)
self.assertIsNone(none_trait)
def setUpClass(cls):
cls.trait = clinvar_to_evidence_strings.create_trait_list(
["Ciliary dyskinesia, primary, 7"], MAPPINGS.trait_2_efo, 9)[0]
def test_return_none(self):
none_trait = clinvar_to_evidence_strings.create_trait_list(["not a real trait"],
MAPPINGS.trait_2_efo, 9)
self.assertIsNone(none_trait)
def setUpClass(cls):
cls.trait = clinvar_to_evidence_strings.create_trait_list(
["Ciliary dyskinesia, primary, 7"], MAPPINGS.trait_2_efo, 9)[0]
