def simulatedAnnealing(initState, pawnAmountBW, temperature, decreaseRate,
iteration):
current = initState
evalCurrent = evaluate(current, pawnAmountBW)
i = 0
isLocalMinim = False
while (evalCurrent != 0 and i < iteration and not isLocalMinim):
isLocalMinim = True
AllNeighbour = listAllNeighbour(current)
for neighbour in AllNeighbour:
if (evalCurrent > evaluate(neighbour, pawnAmountBW)):
current = neighbour
evalCurrent = evaluate(current, pawnAmountBW)
isLocalMinim = False
elif (temperature != 0):
probability = int(
exp(
evaluate(neighbour, pawnAmountBW) -
evalCurrent / temperature))
if (decision(probability)):
current = neighbour
evalCurrent = evaluate(current, pawnAmountBW)
isLocalMinim = False
i += 1
temperature *= decreaseRate / 100
return current
def test_evaluate_too_many_arguments():
expr = parse(tokenize("(/ 6 7 8)"))
with raises(TooManyArguments) as excinfo:
evaluate(expr)
want = "Too many arguments for operator: '/'."
assert want == str(excinfo.value)
def evaluate(num_elves, input, solution):
output = 'subm.csv'
toy_file = os.path.join(os.getcwd(), input)
soln_file = os.path.join(os.getcwd(), output)
toys = get_toys(toy_file)
result = solution.solve(toys)
with open(soln_file, 'wb') as w:
wcsv = csv.writer(w)
wcsv.writerow(['ToyId', 'ElfId', 'StartTime', 'Duration'])
for line in result:
toy_id, elf_id, start_seconds, work_duration, rating = line
ref_time = datetime.datetime(2014, 1, 1, 0, 0)
#TODO pasar a hours.py:
tt = ref_time + datetime.timedelta(seconds=60 * start_seconds)
time_string = " ".join([
str(tt.year),
str(tt.month),
str(tt.day),
str(tt.hour),
str(tt.minute)
])
wcsv.writerow([toy_id, elf_id, time_string, work_duration, rating])
evaluator.evaluate(num_elves, input, output)
def _call_and_eval_assembler(**kwargs):
params = util.kwargs_to_params_dic(kwargs, param2str)
if params is not None:
lam = params.get('-lam', 0.5)
params.pop('-lam', None)
else:
lam = 0.5
assembler.run_assembler(assembler_name, paths['read_alignment'],
paths['assembly_gtf'], params)
evaluator.evaluate(paths['ref_gtf'], paths['assembly_gtf'],
paths['eval_res_prefix'])
metric_stat = evaluator.extract_stat(paths['eval_res_prefix'])
#TODO(shunfu): find a good metric for BO
if metric_stat == {}:
metric = 0
else:
metric = evaluator.calc_metric(metric_stat, metric_type, lam)
# res logs
util.logging('assembler:' + assembler_name, paths['log'])
util.logging(
'params: default' if params is None else 'params:\n' + str(params),
paths['log'])
util.logging('metric stat is: %s' % str(metric_stat), paths['log'])
util.logging(
'metric (%s, lam=%.2f) is %f\n' % (metric_type, lam, metric),
paths['log'])
return metric
def test_evaluate_missing_arguments():
expr = parse(tokenize("(* 5)"))
with raises(MissingArgument) as excinfo:
evaluate(expr)
want = "Not enough arguments for operator: '*'."
assert want == str(excinfo.value)
def main(args):
# Load data and ground-truth
train_data, train_labels, test_data, test_labels = database.load(
standardized=True,
printSize=True,
train_data_path=args.train_data,
train_labels_path=args.train_labels,
test_data_path=args.test_data,
test_labels_path=args.test_labels,
)
train_labels = train_labels.ravel()
# Training
model = algorithm.train(train_data, train_labels, args)
# Logging scores on train and test sets
logging.info("---Training set accuracy: %f" %
model.score(train_data, train_labels))
logging.info("---Testing set accuracy: %f" %
model.score(test_data, test_labels))
predictions = algorithm.predict(test_data, model)
# Evaluate the predictions
evaluator.evaluate(predictions, test_data, test_labels, args.output_folder,
args.model, model)
def test_eval(self):
testcase = '''
(define zero (lambda (f) (lambda (x) x)))
(define one (lambda (f) (lambda (x) (f x))))
(define plus (lambda (m n) (lambda (f) (lambda (x) ((n f) ((m f) x))))))
(define mult (lambda (m n) (lambda (f) (lambda (x) ((n (m f)) x)))))
(define xp (lambda (m n) (lambda (f) (lambda (x) (((n m) f) x)))))
(define pr (lambda (x) (begin (display x) x)))
(define prn (lambda (n) (begin ((n pr) ".") (newline))))
(define two (plus one one))
(define three (plus two one))
(define six (mult two three))
(define sixty-four (xp two six))
(prn sixty-four)
'''
stdout = resoup.globals.stdout
sio = StringIO.StringIO()
resoup.globals.stdout = sio
env = Environment(builtin_env)
for line in testcase.split('\n'):
if line.strip() == '':
continue
evaluate(Parser().parse(Lexer().lex(line)), env)
output = sio.getvalue()
resoup.globals.stdout = stdout
self.assertEquals('.' * 64, output.strip())
def testFunction(self):
tree = [["function", "test", ["return", 2]], ["execute", "true"]]
self.assertEqual(evaluator.evaluate(tree), 2)
tree = [["function", "foo", [["var", "temp", 3], ["return", ['+', "temp", 2]]]], ["execute", "foo"]]
self.assertEqual(evaluator.evaluate(tree), 5)
def main(unused_argv):
assert FLAGS.checkpoint_dir, '`checkpoint_dir` is missing.'
assert FLAGS.eval_dir, '`eval_dir` is missing.'
if FLAGS.clean_dir:
shutil.rmtree(FLAGS.eval_dir, ignore_errors=True)
if FLAGS.pipeline_config_path:
model_config, eval_config, input_config = get_configs_from_pipeline_file()
else:
model_config, eval_config, input_config = get_configs_from_multiple_files()
if FLAGS.save_detection_results and FLAGS.detection_results_name == '':
FLAGS.detection_results_name = os.path.join(FLAGS.eval_dir, 'detection_results.pkl')
model_fn = functools.partial(
model_builder.build,
model_config=model_config,
is_training=False)
create_input_dict_fn = functools.partial(
input_reader_builder.build,
input_config)
label_map = label_map_util.load_labelmap(input_config.label_map_path)
max_num_classes = max([item.id for item in label_map.item])
categories = label_map_util.convert_label_map_to_categories(
label_map, max_num_classes)
evaluator.evaluate(create_input_dict_fn, model_fn, eval_config, input_config, categories,
FLAGS.checkpoint_dir, FLAGS.eval_dir, FLAGS.run_mode,
FLAGS.save_detection_results, FLAGS.detection_results_name)
def testConditionals(self):
tree = ["if", ["true"], True, False]
self.assertTrue(evaluator.evaluate(tree))
tree = ["if", ["false"], True, False]
self.assertFalse(evaluator.evaluate(tree))
def test_evaluate_unknown_operator():
expr = parse(tokenize("@"))
with raises(UnknownOperator) as excinfo:
evaluate(expr)
want = "Unknown operator: '@'."
assert want == str(excinfo.value)
def showdown(self, p1hc, p2hc, bc, pot, hand_string):
p1_fullhand = copy.deepcopy(bc)
p2_fullhand = copy.deepcopy(bc)
p1_fullhand.extend(p1hc)
p2_fullhand.extend(p2hc)
p1_rank = evaluate(p1_fullhand)
p2_rank = evaluate(p2_fullhand)
if self.player:
print("SHOWDOWN")
print("Dealer's holecards: {0} {1}".format(p1hc[0].upper(),
p1hc[1].upper()))
print("BB's holecards: {0} {1}".format(p2hc[0].upper(),
p2hc[1].upper()))
if p1_rank == p2_rank:
msg = "Draw at showdown pot of {0} is split".format(pot)
if self.player:
print(msg)
return [0, 0, "{0}\n{1}".format(hand_string, msg)]
elif p1_rank < p2_rank:
msg = "Dealer wins pot of {0} at showdown".format(pot)
if self.player:
print(msg)
return [(pot / 2), -(pot / 2), "{0}\n{1}".format(hand_string, msg)]
else:
msg = "BB wins pot of {0} at showdown".format(pot)
if self.player:
print(msg)
return [-(pot / 2), (pot / 2), "{0}\n{1}".format(hand_string, msg)]
def test(self):
self.construct_graph()
sess = tf.Session()
saver = tf.train.Saver()
if self.reload:
saver.restore(sess, self.model_path)
# print('model restored')
else:
sess.run(tf.global_variables_initializer())
# test on validation set
feed_dict = {
self.pv_var: self.val_pv,
self.wd_var: self.val_wd,
self.gt_var: self.val_gt
}
val_loss, val_pre = sess.run((self.loss, self.pred), feed_dict)
cur_valid_perf = evaluate(val_pre, self.val_gt, self.hinge)
print('\tVal per:', cur_valid_perf, '\tVal loss:', val_loss)
# test on testing set
feed_dict = {
self.pv_var: self.tes_pv,
self.wd_var: self.tes_wd,
self.gt_var: self.tes_gt
}
test_loss, tes_pre = sess.run((self.loss, self.pred), feed_dict)
cur_test_perf = evaluate(tes_pre, self.tes_gt, self.hinge)
# print('\tTest per:', cur_test_perf, '\tTest loss:', test_loss)
sess.close()
tf.reset_default_graph()
def main(unused_argv):
if (FLAGS.omp > 0):
if not os.environ.get("OMP_NUM_THREADS"):
logging.info('OMP_NUM_THREADS value= %d', FLAGS.omp)
os.environ["OMP_NUM_THREADS"] = str(FLAGS.omp)
if not os.environ.get("KMP_BLOCKTIME"):
logging.info('KMP_BLOCKTIME value= %d', FLAGS.blocktime)
os.environ["KMP_BLOCKTIME"] = str(FLAGS.blocktime)
if not os.environ.get("KMP_SETTINGS"):
os.environ["KMP_SETTINGS"] = "1"
# os.environ["KMP_AFFINITY"]= "granularity=fine,verbose,compact,1,0"
assert FLAGS.checkpoint_dir, '`checkpoint_dir` is missing.'
assert FLAGS.eval_dir, '`eval_dir` is missing.'
tf.gfile.MakeDirs(FLAGS.eval_dir)
if FLAGS.pipeline_config_path:
configs = config_util.get_configs_from_pipeline_file(
FLAGS.pipeline_config_path)
tf.gfile.Copy(FLAGS.pipeline_config_path,
os.path.join(FLAGS.eval_dir, 'pipeline.config'),
overwrite=True)
else:
configs = config_util.get_configs_from_multiple_files(
model_config_path=FLAGS.model_config_path,
eval_config_path=FLAGS.eval_config_path,
eval_input_config_path=FLAGS.input_config_path)
for name, config in [('model.config', FLAGS.model_config_path),
('eval.config', FLAGS.eval_config_path),
('input.config', FLAGS.input_config_path)]:
tf.gfile.Copy(config,
os.path.join(FLAGS.eval_dir, name),
overwrite=True)
model_config = configs['model']
eval_config = configs['eval_config']
input_config = configs['eval_input_config']
if FLAGS.eval_training_data:
input_config = configs['train_input_config']
model_fn = functools.partial(
model_builder.build,
model_config=model_config,
is_training=False)
def get_next(config):
return dataset_util.make_initializable_iterator(
dataset_builder.build(config)).get_next()
create_input_dict_fn = functools.partial(get_next, input_config)
label_map = label_map_util.load_labelmap(input_config.label_map_path)
max_num_classes = max([item.id for item in label_map.item])
categories = label_map_util.convert_label_map_to_categories(
label_map, max_num_classes)
if FLAGS.run_once:
eval_config.max_evals = 1
evaluator.evaluate(create_input_dict_fn, model_fn, eval_config, categories,
FLAGS.checkpoint_dir, FLAGS.eval_dir, intra_op=FLAGS.intra_op, inter_op=FLAGS.inter_op)
def main(unused_argv):
assert FLAGS.checkpoint_dir, '`checkpoint_dir` is missing.'
assert FLAGS.eval_dir, '`eval_dir` is missing.'
tf.gfile.MakeDirs(FLAGS.eval_dir)
if FLAGS.pipeline_config_path:
configs = config_util.get_configs_from_pipeline_file(
FLAGS.pipeline_config_path)
tf.gfile.Copy(FLAGS.pipeline_config_path,
os.path.join(FLAGS.eval_dir, 'pipeline.config'),
overwrite=True)
else:
configs = config_util.get_configs_from_multiple_files(
model_config_path=FLAGS.model_config_path,
eval_config_path=FLAGS.eval_config_path,
eval_input_config_path=FLAGS.input_config_path)
for name, config in [('model.config', FLAGS.model_config_path),
('eval.config', FLAGS.eval_config_path),
('input.config', FLAGS.input_config_path)]:
tf.gfile.Copy(config,
os.path.join(FLAGS.eval_dir, name),
overwrite=True)
model_config = configs['model']
eval_config = configs['eval_config']
input_config = configs['eval_input_config']
if FLAGS.eval_training_data:
input_config = configs['train_input_config']
model_fn = functools.partial(model_builder.build,
model_config=model_config,
is_training=False)
def get_next(config):
return dataset_builder.make_initializable_iterator(
dataset_builder.build(config)).get_next()
create_input_dict_fn = functools.partial(get_next, input_config)
label_map = label_map_util.load_labelmap(input_config.label_map_path)
max_num_classes = max([item.id for item in label_map.item])
categories = label_map_util.convert_label_map_to_categories(
label_map, max_num_classes)
if FLAGS.run_once:
eval_config.max_evals = 1
graph_rewriter_fn = None
if 'graph_rewriter_config' in configs:
graph_rewriter_fn = graph_rewriter_builder.build(
configs['graph_rewriter_config'], is_training=False)
evaluator.evaluate(create_input_dict_fn,
model_fn,
eval_config,
categories,
FLAGS.checkpoint_dir,
FLAGS.eval_dir,
graph_hook_fn=graph_rewriter_fn)
def test_evaluate():
ref_gtf = '/home/shunfu/boassembler/data/resRef/hg19_chr15-UCSC.gtf'
assembly_gtf = '/home/shunfu/boassembler/res/stringtie.gtf'
eval_res_prefix = '/home/shunfu/boassembler/res/stringtie_res'
evaluator.evaluate(ref_gtf, assembly_gtf, eval_res_prefix)
return
def run(self) -> None:
"""Train implicit recommenders."""
train_point = np.load(f'../data/{self.data}/point/train.npy')
val_point = np.load(f'../data/{self.data}/point/val.npy')
test_point = np.load(f'../data/{self.data}/point/test.npy')
prop = np.load(f'../data/{self.data}/point/prop.npy')
num_users = np.int(train_point[:, 0].max() + 1)
num_items = np.int(train_point[:, 1].max() + 1)
if self.model_name in ['bpr', 'ubpr']:
train = np.load(f'../data/{self.data}/{self.model_name}/train.npy')
tf.set_random_seed(12345)
ops.reset_default_graph()
sess = tf.Session()
if self.model_name in ['ubpr', 'bpr']:
pair = PairwiseRecommender(num_users=num_users,
num_items=num_items,
dim=self.dim,
lam=self.lam,
eta=self.eta,
beta=self.beta)
pairwise_trainer(sess,
data=self.data,
model=pair,
train=train,
train_point=train_point,
test_point=test_point,
max_iters=self.max_iters,
batch_size=2**self.batch_size,
model_name=self.model_name)
elif self.model_name == 'relmf':
point = PointwiseRecommender(num_users=num_users,
num_items=num_items,
clip=self.clip,
dim=self.dim,
lam=self.lam,
eta=self.eta)
pointwise_trainer(sess,
data=self.data,
model=point,
train=train_point,
test=test_point,
propensity=prop,
max_iters=self.max_iters,
batch_size=2**self.batch_size,
model_name=self.model_name)
evaluate(data=self.data,
train=train_point,
val=val_point,
test=test_point,
propensity=prop,
model_name=self.model_name,
rare=500,
k=[1, 3, 5])
def cond(args, env):
if len(args) != 3:
throw_error("syntax", "Incorrect use of (if ...): must take exactly three arguments (a test, a pass case, and a fail case).")
test = ev.evaluate(args[0], env)
if type(test) != bool:
throw_error("type", "Incorrect use of (if ...): the test must evaluate to a boolean.")
if test:
return ev.evaluate(args[1], env)
else:
return ev.evaluate(args[2], env)
def test_straight(self):
# Test straight
cards_1 = [[0, 1], [1, 2], [3, 3], [2, 4], [3, 5]]
cards_2 = [[0, 13], [3, 12], [1, 11], [2, 9], [3, 10]]
cards_1_score = evaluator.evaluate(cards_1)
cards_2_score = evaluator.evaluate(cards_2)
print("Straight:", cards_1_score, cards_2_score)
self.assertEqual(6, len(cards_1_score))
self.assertEqual(
-1, evaluator.evaluate_score(cards_1_score, cards_2_score))
def test_three_of_a_kind(self):
# Test 3 of a kind
cards_1 = [[0, 2], [1, 2], [3, 2], [2, 8], [3, 10]]
cards_2 = [[0, 9], [3, 5], [1, 5], [2, 5], [3, 10]]
cards_1_score = evaluator.evaluate(cards_1)
cards_2_score = evaluator.evaluate(cards_2)
print("Three of a kind:", cards_1_score, cards_2_score)
self.assertEqual(6, len(cards_1_score))
self.assertEqual(
-1, evaluator.evaluate_score(cards_1_score, cards_2_score))
def test_high_card(self):
# Test high card
cards_1 = [[0, 2], [1, 3], [1, 5], [2, 8], [3, 10]]
cards_2 = [[0, 3], [1, 6], [1, 5], [2, 8], [3, 10]]
cards_1_score = evaluator.evaluate(cards_1)
cards_2_score = evaluator.evaluate(cards_2)
print("High card:", cards_1_score, cards_2_score)
self.assertEqual(6, len(cards_1_score))
self.assertEqual(
-1, evaluator.evaluate_score(cards_1_score, cards_2_score))
def test_evaluator(self):
n = NumberLit(2)
m = NumberLit(3)
self.assertEqual(evaluate(n), 2)
self.assertEqual(evaluate(m), 3)
e1 = BinaryOp(n, Op.Plus, m)
self.assertEqual(evaluate(e1), 5)
e2 = BinaryOp(n, Op.Mult, m)
self.assertEqual(evaluate(e2), 6)
e3 = BinaryOp(e1, Op.Mult, e1)
self.assertEqual(evaluate(e3), 25)
def main():
config = get_args()
if config.mode == 'eval':
evaluate(config)
else:
datasets = get_data(config)
model = get_model(config)
trainer = Trainer(config, datasets)
trainer.train(model)
def main():
config = tf.ConfigProto()
config.gpu_options.allow_growth = True
K.set_session(tf.Session(config=config))
init_directories()
while True:
model = load_latest_model()
best_model = load_best_model()
evaluate(best_model, model)
train(model, game_model_name=best_model.name)
K.clear_session()
def main():
print("Starting run (v{})".format(__version__))
init_directories()
model_name = "model_1"
model = create_initial_model(name=model_name)
while True:
model = load_latest_model()
best_model = load_best_model()
train(model, game_model_name=best_model.name)
evaluate(best_model, model)
K.clear_session()
def test_evaluate_user_function_missing_argument(mod_body):
# backup function_definitions
import evaluator
initial_fundefs = evaluator.function_definitions
evaluator.function_definitions = {}
# test
define_function(('mod', ['m', 'n'], mod_body))
ast = ['mod', 19]
with raises(errors.MissingArgument) as excinfo:
evaluate({}, ast)
assert "Missing argument: 'mod' needs 2." == str(excinfo.value)
# restore function_definitions
evaluator.function_definitions = initial_fundefs
def main():
init_directories()
model_name = "model_1"
model = create_initial_model(name=model_name)
while True:
model = load_latest_model()
best_model = load_model(os.path.join(conf['MODEL_DIR'],
conf['BEST_MODEL']),
custom_objects={'loss': loss})
train(model, game_model_name=best_model.name)
evaluate(best_model, model)
def hillClimbing(initState, pawnAmountBW):
current = initState
evalCurrent = evaluate(current, pawnAmountBW)
isLocalMinim = False
while (evalCurrent != 0 and not isLocalMinim):
isLocalMinim = True
AllNeighbour = listAllNeighbour(current)
for neighbour in AllNeighbour:
if (evalCurrent > evaluate(neighbour, pawnAmountBW)):
isLocalMinim = False
current = neighbour
evalCurrent = evaluate(neighbour, pawnAmountBW)
return current
def setUp(self):
init_directories()
model_name = "model_1"
model = create_initial_model(name=model_name)
best_model = load_best_model()
if best_model.name == model.name:
train(model, game_model_name=best_model.name)
evaluate(best_model, model)
# We save wether or not it was a better model
full_filename = os.path.join(conf['MODEL_DIR'], conf['BEST_MODEL'])
model.save(full_filename)
else:
model = best_model
self.model = model
def check_gold(Hs, cipher_text):
"""
Each iteration, check whether current best solutions. (In order to check in which step the the solution is pruned)
:param Hs:
:param cipher_text:
:return: max acc
"""
max_acc = 0
deciphered_text = None
for mappings, sc in Hs:
deciphered = decipher(cipher_text, mappings)
if max_acc < evaluator.evaluate(deciphered):
max_acc = evaluator.evaluate(deciphered)
deciphered_text = deciphered
return max_acc, deciphered_text
def cond(args, env):
if len(args) != 3:
throw_error(
"syntax",
"Incorrect use of (if ...): must take exactly three arguments (a test, a pass case, and a fail case)."
)
test = ev.evaluate(args[0], env)
if type(test) != bool:
throw_error(
"type",
"Incorrect use of (if ...): the test must evaluate to a boolean.")
if test:
return ev.evaluate(args[1], env)
else:
return ev.evaluate(args[2], env)
def check_gwm(self, raw_hit_chance, hit_chance, die, attacks, dmg_str):
p_chance = None
new_dmg_str = None
if "gwm" in self.feats or "gwm2" in self.feats:
penalty = 5 if "gwm" in self.feats else 2
bonus_dmg = 10 if "gwm" in self.feats else (
"%.4f" %
evaluate("d%s" % die.split("d")[-1], self.fighting_style))
p_chance = min(1, (raw_hit_chance * 20 - penalty) / 20.0)
p_attack = "(%s*(%s+%s+%s%s))" % (p_chance, die,
self.attack_mod + self.dmg_bonus,
bonus_dmg, self.smite)
n_attack = "(%s*(%s+%s%s))" % (hit_chance, die, self.attack_mod +
self.dmg_bonus, self.smite)
np_attack = "%s+%s" % (p_attack, n_attack)
p_dpr = self.evaluate_dmg_str("%s*(%s)" % (attacks, p_attack))
np_dpr = self.evaluate_dmg_str(np_attack) if attacks > 1 else 0
n_dpr = self.evaluate_dmg_str("%s*(%s)" % (attacks, n_attack))
maxdpr = max(p_dpr, np_dpr, n_dpr)
if maxdpr == p_dpr:
new_dmg_str = "%s*%s" % (attacks, p_attack)
elif maxdpr == np_dpr:
new_dmg_str = np_attack
p_chance = (hit_chance + p_chance) / 2.0
else:
new_dmg_str = "%s*%s" % (attacks, n_attack)
p_chance = hit_chance
if dmg_str:
new_dmg_str = "%s+%s" % (dmg_str, new_dmg_str)
if new_dmg_str:
self.dmg_str = new_dmg_str
return p_chance
def roll(self):
while True:
try:
line = read_form()
except (KeyboardInterrupt,EOFError) as e:
print("\nMoriturus te saluto.")
exit(0)
tokens = scan_lexer.tokenize(line)
balance = 0
ast,balance = scan_lexer.prstree_balance(tokens)
if balance < 0:
print("Exception: Cannot close more than opened parentheses")
continue
elif balance > 0:
print("Exception: All opened parentheses must be closed")
continue
""" Replacing the string format"""
ast = str_format(ast)
for expr in ast:
""" Print the evaluation of the expression in scope.evaluate(expression) """
try:
print(evaluator.evaluate(expr))
except Exception as e:
print(str(e))
def grade(args):
if not check_project_folder():
return
import evaluator as ev
base_path = get_base_path(args)
grader_path = os.path.join(base_path, 'grader.txt')
order_path = os.path.join(base_path, 'order.json')
result_path = os.path.join(base_path, 'results.json')
if os.path.exists(result_path) and not args.force:
error('Test already evaluated. Pass --force to ovewrite.')
return
if not os.path.exists(order_path):
error('No order.json file found. Cannot evaluate.')
return
if os.path.exists(grader_path):
grades = ev.evaluate(grader_path, order_path)
else:
warn('No grader.txt sheet was found. Will only generate stats.')
grades = None
stats = ev.get_stats(order_path)
with open(result_path, 'w') as fp:
json.dump({"grades": grades, "stats": stats}, fp, indent=4)
def anonymous(*arguments):
# print("inside anonymous function")
# print("arguments(" + str(len(arguments)) + "):", arguments)
if len(arguments) != len(largs):
throw_error("syntax", "This function takes " + str(len(largs)) + " arguments (" + str(len(arguments)) + " provided).")
lenv = Environment(name="anon_fn", outer=env, variables=largs, values=arguments)
return ev.evaluate(lbody, lenv)
def repl(input_fn=input):
"""Read-Eval-Print-Loop"""
print(f'To exit, type {QUIT_COMMAND}', file=sys.stderr)
while True:
# ___________________________________________ Read
try:
line = input_fn('> ')
except EOFError:
break
if line == QUIT_COMMAND:
break
if not line:
continue
# ___________________________________________ Eval
current_exp = parse_exp(tokenize(line))
if isinstance(current_exp, list) and current_exp[0] == 'define':
result = define_function(current_exp[1:])
else:
try:
result = evaluate({}, current_exp)
except (errors.UndefinedVariable, errors.UndefinedFunction) as exc:
print('***', exc)
continue
# ___________________________________________ Print
print(result)
def test_expression(ast, expected):
got = evaluate(ast)
assert type(got) is type(expected)
if isinstance(expected, int):
assert expected == got
else:
assert isclose(expected, got, rel_tol=.01)
def define(args, env):
if len(args) != 2:
throw_error("syntax", "Incorrect use of (define ...): must take exactly two arguments.")
assert_or_throw(args[0]['type'] == 'symbol', "type", "Incorrect use of (define ...): the variable must be a symbol.")
variable = args[0]['value']
value = ev.evaluate(args[1], env)
env.set(variable, value)
return value
def do(args, env):
do_env = Environment(name="do", outer=env)
if len(args) == 0:
throw_error("syntax", "Incorrect use of (do ...): must take at least one argument.")
result = None
for a in args:
result = ev.evaluate(a, do_env)
return result
def testArithmetic(self):
tree = ["+", 1, 3]
self.assertEqual(evaluator.evaluate(tree), 4)
tree = ["-", 3, 1]
self.assertEqual(evaluator.evaluate(tree), 2)
tree = ["*", 3, 1]
self.assertEqual(evaluator.evaluate(tree), 3)
tree = ["/", 3, 1]
self.assertEqual(evaluator.evaluate(tree), 3)
#compound operations
tree = ["+", ["*", 4, 2], ["/", 16, 8]]
self.assertEqual(evaluator.evaluate(tree), 10)
def interpret(source, env=None):
"""
Interpret a lisp program statement
Accepts a program statement as a string, interprets it, and then
returns the resulting lisp expression as string.
"""
if env is None:
env = Environment()
return unparse(evaluate(parse(source), env))
def start():
""" setting up the repl loop """
# load std lib
init()
while True:
input_string = raw_input('<scheme>: ')
# create a stream object from string
read_stream = utilities.StringStream(input_string)
write_stream = utilities.StringStream()
# retrieve parsed string as list from reader
parsed_scheme = reader.read_from_stream(read_stream)
# hand list over to eval
evaluator.evaluate(parsed_scheme, write_stream)
print write_stream.get_stream()
def run_block(args, context):
block = args["block"]
if type(block) != obj.Block:
return err("the $block parameter in `run $block` must be of type <block>")
if len(block.params) > 0:
return err("since no arguments are provided, $block of `run $block` must have no parameters")
ctx = context.enclose()
return evaluate(block.body, ctx)
def run_block_with_args(args, context):
block = args["block"]
b_args = args["args"].get_elements()
if len(block.params) != len(b_args):
return err("the amount of arguments provided in `run $block with $args` should match the number of parameters in the block")
params = [param.value for param in block.params]
args_dictionary = dict(zip(params, b_args))
ctx = context.enclose_with_args(args_dictionary)
return evaluate(block.body, ctx)
def execute(text, print_result, ctx):
tokens = l.lex(text)
parser = p.Parser(tokens)
program = parser.parse_program()
if len(parser.errors) > 0:
parser.print_errors()
else:
result = e.evaluate(program, ctx)
if (print_result and type(result) != o.Null) or type(result) == o.Error:
print(result)
def interpret_file(filename, env=None):
"""
Interpret a lisp file
Accepts the name of a lisp file containing a series of statements.
Returns the value of the last expression of the file.
"""
if env is None:
env = Environment()
with open(filename, 'r') as sourcefile:
source = "".join(sourcefile.readlines())
asts = parse_multiple(source)
results = [evaluate(ast, env) for ast in asts]
return unparse(results[-1])
def run_stats(args):
import evaluator
rev_map = {}
for k, v in fake_metadata.items():
rev_map[v["participant_id"]] = k
basedir = os.path.dirname(os.path.dirname(__file__))
exome_dir = os.path.join(basedir, "testexomes")
out_scores = {}
for donor_dir in glob(os.path.join(args.out_dir, "*")):
donor = os.path.basename(donor_dir)
if rev_map[donor] not in out_scores:
out_scores[rev_map[donor]] = {}
for vcf_file in glob(os.path.join(donor_dir, "*.vcf")):
method = os.path.basename(vcf_file).replace(".vcf", "")
vtype = None
if method in SNP_METHOD:
vtype = "SNV"
if method in INDEL_METHOD:
vtype = "INDEL"
truth_file = os.path.join(exome_dir, "testexome" + rev_map[donor][-1:] + ".truth.vcf.gz")
scores = evaluator.evaluate(vcf_file, truth_file, vtype=vtype, truthmask=False)
out_scores[rev_map[donor]][method] = scores
print out_scores
totals = {}
for v in out_scores.values():
for method, values in v.items():
if method not in totals:
totals[method] = []
totals[method].append(values)
for method, values in totals.items():
out = []
for i in range(3):
out.append("%s" % (sum(j[i] for j in values) / float(len(values))))
print method, "\t".join(out)
def initializePage(self):
super(ResultsPage, self).initializePage()
self.results = self.parentWizard.results
# TODO: Unwire this
self.grades = evaluate('generated/last/grader.txt', 'generated/last/results.json')
# This assumes scores are normalized to 1 (which is probably
# a good idea anyway. Otherwise, the max score would depend
# on the specific questions each exam got out of randomness)
self.max_score = self.project.total_questions_per_exam
self.ui.treeWidget.clear()
for test_num, test_data in self.results.items():
# TODO: Make name editable
# name = random.choice(['Fulano', 'Mengano', 'Ciclano', 'Esperanzejo'])
grade = self.grades[test_num]['total_grade']
# score = float(grade)/float(self.max_score) * 100 # TODO: implement scoring correctly
# item = QTreeWidgetItem([str(test_num), str(name), str(grade), str(score)])
item = QTreeWidgetItem([str(test_num), str(grade)])
self.ui.treeWidget.addTopLevelItem(item)
def evaluate(name, no_initial_training=False):
# import the solution name into the global namespace as 'exercise'
exercise = __import__(convert(name))
name = convert(name)
# game and agent setup code
game = Game(do_render=args.render)
game.set_size(args.grid_size, args.grid_size)
original_game = copy.copy(game)
# fetch the agent from the provided solution
agent = fetch_agent(exercise, game)
file_name_add = ''
if not no_initial_training:
if args.dephase:
agent.dephase = True
exercise.train(agent)
else:
file_name_add = 'no_train_'
# clean up after training
agent.reward_scaling([1, -1, -1])
agent.accumulated = 0 # reset accumulated rewards
agent.set_epsilon(0.0) # turn off exploration
agent.game.reset() # reset the game
agent.game.high_score = 0
agent.fov = args.fov
agent.game = original_game # if the training modifies the game, it is fixed here
# load_reward_profile(agent)
exercise.reward_profile(agent)
if args.dephase:
agent.dephase = False
exercise.train(agent)
# evaluate the training results
folder = 'eval_solutions'
file_name = evaluator.evaluate(agent, name=os.path.join(folder, file_name_add+name))
# print out a nice summary of how the evaluation went
summarizer.summarize_e(file_name)
return file_name
def test_addition_with_naturals(self):
self.input_stream.set_stream("(+ 2 3)")
parsed = reader.read_from_stream(self.input_stream)
evaluator.evaluate(parsed, self.output_stream)
self.assertEqual(self.output_stream.get_stream(), "5")
# print(wordlist.most_common(10))
# print(classifier.show_most_informative_features(32))
# print(extract_features())
# tweet = "'Love-cheat' Daniel Radcliffe splits with girlfriend Rosie Coker: London, Oct 19: Daniel Radcliffe has split wit... http://tinyurl.com/8oxx2ns "
# print(classifier.classify(extract_features(tweet.split())))
with open("/Users/Jaaksi/Documents/Github/learnpython/harkkatyo/test_data.tsv", "r") as testfile, open("/Users/Jaaksi/Documents/Github/learnpython/harkkatyo/evalfile.tsv", "w") as evalfile:
tsvreader = csv.reader(testfile, dialect='excel-tab',delimiter="\t")
evalwriter = csv.writer(evalfile, dialect='excel-tab', delimiter='\t')
for line in tsvreader:
tweet = line[3]
result = classifier.classify(extract_features(tweet.split()))
evalwriter.writerow([line[0], line[1], result, line[3]])
evaluator.evaluate("/Users/Jaaksi/Documents/Github/learnpython/harkkatyo/test_data.tsv", "/Users/Jaaksi/Documents/Github/learnpython/harkkatyo/evalfile.tsv")
# print(classifier.show_most_informative_features(15))
def testAssignment(self):
tree = [["var", "name", "Jane"], ["name"]]
self.assertEqual(evaluator.evaluate(tree), "Jane")
elif text in ('.exit', '.quit'):
break
result = evaluate_expression(InterpreterInput(text),
environment)
print "=>", pretty_print(result)
# set % as the last evaluated expression in environment
environment['%'] = quote(result)
except EOFError:
break
except KeyboardInterrupt:
print "\ninterrupt."
except Exception as e:
print "error:", e.message
print "\nexiting..."
if __name__ == "__main__":
if len(sys.argv) == 1:
repl()
elif len(sys.argv) == 2:
with codecs.open(sys.argv[1], 'r', 'utf-8') as f:
evaluate(f,make_minimum_environment())
else:
sys.stderr.write("Usage: %s [FILE]\nif FILE is not provided, scheme runs in eval-print-loop mode.\n" %
sys.argv[0])
sys.exit(1)
def _run_block(block, args, context):
params = [param.value for param in block.params]
args_dict = dict(zip(params, args))
ctx = context.enclose_with_args(args_dict)
return evaluate(block.body, ctx)
#!/usr/bin/env python from sys import argv from pretty import pretty from evaluator import evaluate from parser import parse from sugar import desugar from tokenizer import tokenize if __name__ == '__main__': code = argv[1] print pretty(evaluate(desugar(parse(tokenize(code)))))
def testBool(self):
tree = ['true']
self.assertTrue(evaluator.evaluate(tree))
tree = ['false']
self.assertFalse(evaluator.evaluate(tree))
#>
tree = ['>', 5, 4]
self.assertTrue(evaluator.evaluate(tree))
tree = ['>', 3, 6]
self.assertFalse(evaluator.evalutate(tree))
tree = ['>', 6, 6]
self.assertFalse(evaluator.evalutate(tree))
#<
tree = ['<', 4, 11]
self.assertTrue(evaluator.evaluate(tree))
tree = ['<', 9, 8]
self.assertFalse(evaluator.evaluate(tree))
tree = ['<', 1, 1]
self.assertFalse(evaluator.evaluate(tree))
#>=
tree = ['>=', 5, 4]
self.assertTrue(evaluator.evaluate(tree))
tree = ['>=', 3, 6]
self.assertFalse(evaluator.evalutate(tree))
tree = ['>=', 6, 6]
self.assertTrue(evaluator.evalutate(tree))
#<=
tree = ['<=', 4, 11]
self.assertTrue(evaluator.evaluate(tree))
tree = ['<=', 9, 8]
self.assertFalse(evaluator.evaluate(tree))
tree = ['<=', 1, 1]
self.assertTrue(evaluator.evaluate(tree))
#and
tree = ['&&', "true", "false"]
self.assertFalse(evaluator.evaluate(tree))
tree = ['&&', 'true', 'true']
self.assertTrue(evaluator.evaluate(tree))
tree = ['&&', 'false', 'false']
self.assertFalse(evaluator.evaluate(tree))
tree = ['&&', 'true', 'true', 'true']
self.assertTrue(evaluator.evaluate(tree))
#or
tree = ['||', "true", "false"]
self.assertTrue(evaluator.evaluate(tree))
tree = ['||', 'true', 'true']
self.assertTrue(evaluator.evaluate(tree))
tree = ['||', 'false', 'false']
self.assertFalse(evaluator.evaluate(tree))
tree = ['||', 'true', 'true', 'true']
self.assertTrue(evaluator.evaluate(tree))
#!
tree = ['!', 'true']
self.assertFalse(evaluator.evaluate(tree))
tree = ['!', 'false']
self.assertTrue(evaluator.evaluate(tree))