def test_POSTing_new_experimental_protocol_with_image_creates_image_file(
self):
owner = User.objects.create_user(username='******', password='******')
experiment = create_experiment(1, owner, Experiment.TO_BE_ANALYSED)
group = create_group(1, experiment)
image_file = generate_image_file(filename='datei.jpg')
url = reverse('api_group_experimental_protocol-list',
kwargs={'pk': group.id})
self.client.login(username=owner.username, password='******')
response = self.client.post(
url, {
'image': image_file,
'textual_description': 'Ein wunderbar Beschreibung'
},
format='multipart')
self.client.logout()
self.assertEqual(response.status_code, status.HTTP_201_CREATED)
new_exp_protocol = ExperimentalProtocol.objects.last()
self.assertEqual(new_exp_protocol.textual_description,
'Ein wunderbar Beschreibung')
self.assertTrue(
os.path.exists(
os.path.join(TEMP_MEDIA_ROOT, 'uploads',
datetime.utcnow().strftime('%Y/%m/%d'),
'datei.jpg')))
def test_cannot_save_empty_attributes(self):
owner = User.objects.create_user(username='******',
password='******')
experiment = create_experiment(1,
owner=owner,
status=Experiment.TO_BE_ANALYSED)
group = create_group(1, experiment)
experimental_protocol = ExperimentalProtocol(group=group)
with self.assertRaises(ValidationError):
experimental_protocol.save()
experimental_protocol.full_clean()
def create_model_instances_to_test_step_type_data():
experiment = create_experiment(1)
group = create_group(1, experiment)
create_genders()
participant = create_participant(1, group,
Gender.objects.order_by('?').first())
return {
'experiment': experiment,
'group': group,
'participant': participant
}
def test_delete_instance_deletes_related_files(self):
experiment = create_experiment(1)
group = create_group(1, experiment)
stimulus = create_stimulus_step(group)
file_instance = stimulus.media_file
add_temporary_file_to_file_instance(file_instance)
stimulus.delete()
self.assertFalse(
os.path.exists(
os.path.join(self.TEMP_MEDIA_ROOT, file_instance.name)))
def test_delete_instance_deletes_related_files(self):
experiment = create_experiment(1)
group = create_group(1, experiment)
experimental_protocol = create_experimental_protocol(group)
file_instance = experimental_protocol.image
add_temporary_file_to_file_instance(file_instance)
experimental_protocol.delete()
self.assertFalse(
os.path.exists(
os.path.join(self.TEMP_MEDIA_ROOT, file_instance.name)))
def test_delete_instance_deletes_related_files(self):
experiment = create_experiment(1)
group = create_group(1, experiment)
step = create_step(1, group, Step.EEG)
step_additional_file = StepAdditionalFile.objects.create(step=step)
file_instance = step_additional_file.file
add_temporary_file_to_file_instance(file_instance)
step_additional_file.delete()
self.assertFalse(
os.path.exists(
os.path.join(self.TEMP_MEDIA_ROOT, file_instance.name)))
def test_can_see_groups_items_in_downloads_tab_content_only_if_they_exist(
self):
##
# Let's create an experiment with Experiment and Groups data. With
# it, we simulate that Portal received an experiment, only with
# Experiment and Group data. One group created has no data besides
# Group data, the other has 1 participant associated
##
owner = User.objects.get(username='******')
create_experiment(1, owner, Experiment.APPROVED)
experiment = Experiment.objects.last()
create_group(1, experiment)
group_with_nothing = Group.objects.last()
create_group(1, experiment)
create_participant(1, Group.objects.last(), Gender.objects.last())
##
# We have to refresh page to include this new experiment in
# Experiments List
##
self.browser.refresh()
downloads_tab_content = self.access_downloads_tab_content(experiment)
# As the last group created has only basic participant information (
# without data collection for it), that group is not listed.
self.assertNotIn(
'Group ' + experiment.groups.last().title,
downloads_tab_content.text
)
self.assertIn(
'There are not data for group ' +
group_with_nothing.title +
". But there's still basic Experiment data. Click in 'Download' "
"button to download it.",
downloads_tab_content.text
)
self.assertNotIn('Per Questionnaire Data', downloads_tab_content.text)
def test_remove_experiment_last_version_removes_objects_associated(
self, mock_user_input):
"""
Do not test for files deleted. This tests are made in models tests.
"""
# create experiment and some objects associated with it
experiment = create_experiment(1)
create_study(1, experiment)
groups = create_group(3, experiment)
eeg_setting = create_eeg_setting(1, experiment)
exp_prot = None # just to protect assert below
for group in groups:
exp_prot = create_experimental_protocol(group)
eeg_step = create_eeg_step(group, eeg_setting)
participants = create_participant(
3, group, gender=Gender.objects.order_by('?').first())
for participant in participants:
create_eeg_data(eeg_setting, eeg_step, participant)
# remove experiment last version and its related objects
out = StringIO()
call_command('remove_experiment',
experiment.nes_id,
experiment.owner,
'--last',
stdout=out)
# asserts
self.assertFalse(Experiment.objects.exists())
self.assertFalse(Study.objects.exists())
self.assertFalse(EEGSetting.objects.exists())
# TODO: fix this after fix tests helper (does not create model
# TODO: instances for all in it, create under demand in tests). Test
# TODO: for all objects at once.
for group in groups:
self.assertFalse(Group.objects.filter(pk=group.id).exists())
self.assertFalse(
ExperimentalProtocol.objects.filter(pk=exp_prot.id).exists())
self.assertFalse(EEG.objects.filter(group=group).exists())
self.assertFalse(group.participants.exists())
self.assertFalse(EEGData.objects.exists())
self.assertIn(
'Last version of experiment "%s" successfully removed' %
experiment.title, out.getvalue())
def create_questionnaire(experiment):
"""
Necessary the following files to exist:
- settings.BASE_DIR/experiments/tests/questionnaire7.csv
- settings.BASE_DIR/experiments/tests/response_questionnaire7.json
"""
group = create_group(1, experiment)
participant = create_participant(1, group)
participant.age = None
participant.save()
questionnaire = create_questionnaire(1, 'Q5489', group)
create_questionnaire_language(
questionnaire,
settings.BASE_DIR + '/experiments/tests/questionnaire7.csv', 'en')
create_questionnaire_responses(
questionnaire, participant, settings.BASE_DIR +
'/experiments/tests/response_questionnaire7.json')
return group
start_date=datetime.utcnow(),
experiment=experiment_owner1)
# to test search (necessary to approve experiment(s) in front-end or
# directly in database)
if i == 1:
study = Study.objects.last()
study.description = 'The brachial artery is the major blood vessel ' \
'of the (upper) arm. It\'s correlated with ' \
'plexus.'
# We put a keyword with the string 'brachial plexus' in the study to
# also be found by search test
study.keywords.add('brachial plexus')
study.save()
create_ethics_committee_info(experiment_owner1)
create_group(randint(1, 3), experiment_owner1)
for i in range(4, 6):
experiment_owner2 = Experiment.objects.create(
title=fake.word().title(),
description=fake.text(),
nes_id=i,
owner=owner2,
version=1,
sent_date=datetime.utcnow(),
status=Experiment.TO_BE_ANALYSED)
# to test search (necessary to approve experiment(s) in front-end or
# directly in database)
if i == 4:
experiment_owner2.title = 'Brachial Plexus'
experiment_owner2.save()
def setUp(self):
experiment = create_experiment(1)
group = create_group(1, experiment)
create_genders()
create_participant(1, group)