def test_compare_form_bad_chars_fasta(self):
form_data = {
'name': 'test-name',
'fasta': '12345',
'domain': 'Universal',
'clade': '4930',
'isotype': 'All',
'use_fasta': 'True'
}
form = forms.CompareForm(data=form_data)
self.assertFalse(form.is_valid())
form_data[
'fasta'] = '>myseq\nACTGACATCGTAGCTAGTACG\n%%%%^^^***AF<><>AJFJGOSFES\nACTATATA\n>seq2\nACACACACACACAC'
form = forms.CompareForm(data=form_data)
self.assertFalse(form.is_valid())
def test_compare_form_missing_clade(self):
form_data = {
'name': 'test-name',
'clade': '',
'isotype': 'All',
'use_fasta': False
}
form = forms.CompareForm(data=form_data)
self.assertFalse(form.is_valid())
def test_compare_form_no_domain(self):
form_data = {
'name': 'test-name',
'fasta': '',
'clade': '4930',
'isotype': 'All',
'use_fasta': 'True'
}
form = forms.CompareForm(data=form_data)
self.assertFalse(form.is_valid())
def test_compare_form_valid_fasta(self):
form_data = {
'name': 'test-name',
'fasta': '>myseq\nACTG',
'clade': '4930',
'isotype': 'All',
'use_fasta': 'True'
}
form = forms.CompareForm(data=form_data)
self.assertTrue(form.is_valid())
def test_compare_form_toggle_disable_fasta_validation(self):
form_data = {
'name': 'test-name',
'fasta': 'invalid fasta',
'clade': '4930',
'isotype': 'All',
'use_fasta': False
}
form = forms.CompareForm(data=form_data)
self.assertTrue(form.is_valid())
self.assertFalse(form.has_error('fasta'))
def test_compare_form_malformed_fasta(self):
form_data = {
'name': 'test-name',
'fasta': 'AGACAGCGATGC',
'domain': 'Universal',
'clade': '4930',
'isotype': 'All',
'use_fasta': 'True'
}
form = forms.CompareForm(data=form_data)
self.assertFalse(form.is_valid())
def test_compare_form_invalid_clade_select(self):
form_data = {
'name': 'test-name',
'fasta': '',
'clade': 'asdf',
'isotype': 'All',
'use_fasta': 'False'
}
form = forms.CompareForm(data=form_data)
self.assertFalse(form.is_valid())
self.assertEquals(
form.errors['clade'][0],
'Select a valid choice. asdf is not one of the available choices.')