Python sciEntry 예제들

예제 #1

 def test_operator(self):
     sciA = sciEntry('seqA', 'seqB', 0.1)
     refSciA = sciEntry('seqA', 'seqB', 0.2)
     sciC = sciA - refSciA
     self.assertEqual(sciC.is_diff, True)
     self.assertEqual(sciC.sequence_a, 'seqA')
     self.assertEqual(sciC.sequence_b, 'seqB')
     self.assertEqual(sciC.sci, -0.1)

예제 #2

파일: test_extractSciComb.py 프로젝트: xiuchengquek/DotalignerFurtherOptimization

 def test_operator(self):
     sciA =  sciEntry('seqA', 'seqB', 0.1)
     refSciA = sciEntry('seqA', 'seqB', 0.2)
     sciC = sciA - refSciA
     self.assertEqual(sciC.is_diff, True)
     self.assertEqual(sciC.sequence_a, 'seqA')
     self.assertEqual(sciC.sequence_b, 'seqB')
     self.assertEqual(sciC.sci, -0.1)

예제 #3

 def test_to_string(self):
     sciA = sciEntry('seqA', 'seqB', 0.1)
     self.assertEqual(sciA.to_string(), 'seqA\tseqB\t0.100000')
     refSciA = sciEntry('seqA', 'seqB', 0.2)
     sciC = sciA - refSciA
     self.assertEqual(sciC.is_diff, True)
     self.assertEqual(sciC.sequence_a, 'seqA')
     self.assertEqual(sciC.sequence_b, 'seqB')
     self.assertEqual(sciC.sci, -0.1)

예제 #4

파일: test_extractSciComb.py 프로젝트: xiuchengquek/DotalignerFurtherOptimization

 def test_to_string(self):
     sciA =  sciEntry('seqA', 'seqB', 0.1)
     self.assertEqual(sciA.to_string(), 'seqA\tseqB\t0.100000')
     refSciA = sciEntry('seqA', 'seqB', 0.2)
     sciC = sciA - refSciA
     self.assertEqual(sciC.is_diff, True)
     self.assertEqual(sciC.sequence_a, 'seqA')
     self.assertEqual(sciC.sequence_b, 'seqB')
     self.assertEqual(sciC.sci, -0.1)

예제 #5

    def test_init(self):
        sciA = sciEntry('seqA', 'seqB', 0.1)
        self.assertEqual(sciA.sequence_a, 'seqA')
        self.assertEqual(sciA.sequence_b, 'seqB')
        self.assertEqual(sciA.sci, 0.1)
        self.assertEqual(sciA.id, 'seqA seqB')
        self.assertEqual(sciA.is_diff, False)

        sciB = sciEntry('seqC', 'seqD', 0.1, is_diff=True)
        self.assertEqual(sciB.sequence_a, 'seqC')
        self.assertEqual(sciB.sequence_b, 'seqD')
        self.assertEqual(sciB.sci, 0.1)
        self.assertEqual(sciB.id, 'seqC seqD')
        self.assertEqual(sciB.is_diff, True)

예제 #6

파일: test_extractSciComb.py 프로젝트: xiuchengquek/DotalignerFurtherOptimization

    def test_init(self):
        sciA = sciEntry('seqA', 'seqB', 0.1)
        self.assertEqual(sciA.sequence_a, 'seqA')
        self.assertEqual(sciA.sequence_b, 'seqB')
        self.assertEqual(sciA.sci, 0.1)
        self.assertEqual(sciA.id, 'seqA seqB')
        self.assertEqual(sciA.is_diff, False)

        sciB = sciEntry('seqC', 'seqD', 0.1, is_diff=True)
        self.assertEqual(sciB.sequence_a, 'seqC')
        self.assertEqual(sciB.sequence_b, 'seqD')
        self.assertEqual(sciB.sci, 0.1)
        self.assertEqual(sciB.id, 'seqC seqD')
        self.assertEqual(sciB.is_diff, True)

예제 #7

 def test_from_string(self):
     sci_string = 'seqA\tseqB\tseqC\t\tasdas\tssd\t0.1'
     sciA = sciEntry.from_string(sci_string)
     sciA = sciEntry('seqA', 'seqB', 0.1)
     self.assertEqual(sciA.sequence_a, 'seqA')
     self.assertEqual(sciA.sequence_b, 'seqB')
     self.assertEqual(sciA.sci, 0.1)
     self.assertEqual(sciA.id, 'seqA seqB')
     self.assertEqual(sciA.is_diff, False)

예제 #8

파일: test_extractSciComb.py 프로젝트: xiuchengquek/DotalignerFurtherOptimization

 def test_from_string(self):
     sci_string = 'seqA\tseqB\tseqC\t\tasdas\tssd\t0.1'
     sciA = sciEntry.from_string(sci_string)
     sciA = sciEntry('seqA', 'seqB', 0.1)
     self.assertEqual(sciA.sequence_a, 'seqA')
     self.assertEqual(sciA.sequence_b, 'seqB')
     self.assertEqual(sciA.sci, 0.1)
     self.assertEqual(sciA.id, 'seqA seqB')
     self.assertEqual(sciA.is_diff, False)

예제 #9

 def test_exception_thrown(self):
     sciA = sciEntry('seqA', 'seqB', 0.1)
     refSciA = sciEntry('seqC', 'seqD', 0.2)
     t = lambda x, y: x - y
     self.assertRaises(ValueError, t, refSciA, sciA)

예제 #10

파일: test_extractSciComb.py 프로젝트: xiuchengquek/DotalignerFurtherOptimization

 def test_exception_thrown(self):
     sciA =  sciEntry('seqA', 'seqB', 0.1)
     refSciA = sciEntry('seqC', 'seqD', 0.2)
     t = lambda x, y : x - y
     self.assertRaises(ValueError, t, refSciA, sciA)