def test_get_patient_everything(test_dataset, test_fhir_store, capsys):
fhir_resources.create_resource(service_account_json, base_url, project_id,
cloud_region, dataset_id, fhir_store_id,
resource_type)
resource = fhir_resources.search_resources_get(service_account_json,
base_url, project_id,
cloud_region, dataset_id,
fhir_store_id,
resource_type)
# Save the resource_id from the object returned by search_resources()
# because you need to pass it into get_resource() and delete_resource()
resource_id = resource["entry"][0]["resource"]["id"]
fhir_resources.get_patient_everything(service_account_json, base_url,
project_id, cloud_region, dataset_id,
fhir_store_id, resource_id)
fhir_resources.delete_resource(service_account_json, base_url, project_id,
cloud_region, dataset_id, fhir_store_id,
resource_type, resource_id)
out, _ = capsys.readouterr()
assert 'id' in out
def test_delete_patient(test_dataset, test_fhir_store, test_patient, capsys):
fhir_resources.delete_resource(service_account_json, base_url, project_id,
cloud_region, dataset_id, fhir_store_id,
resource_type, test_patient)
out, _ = capsys.readouterr()
print(out)
assert "Deleted Patient resource" in out
def test_conditional_update_resource(test_dataset, test_fhir_store,
test_patient, capsys):
# The conditional method tests use an Observation, so we have to create an
# Encounter from test_patient and then create an Observation from the
# Encounter.
encounter_response = fhir_resources.create_encounter(
service_account_json,
base_url,
project_id,
cloud_region,
dataset_id,
fhir_store_id,
test_patient,
)
encounter_resource_id = encounter_response.json()["id"]
observation_response = fhir_resources.create_observation(
service_account_json,
base_url,
project_id,
cloud_region,
dataset_id,
fhir_store_id,
test_patient,
encounter_resource_id,
)
observation_resource_id = observation_response.json()["id"]
fhir_resources.conditional_update_resource(
service_account_json,
base_url,
project_id,
cloud_region,
dataset_id,
fhir_store_id,
test_patient,
encounter_resource_id,
)
# In accordance with the FHIR spec, if conditional patch or conditional update
# can only be applied to one resource at a time. If the search criteria
# identify more than one match, the request returns a 412 Precondition Failed
# error. Every time the tests create an Observation resource, the resource is
# identical, therefore you have to delete each Observation after it's created
# or else conditional patch/update will detect more than one Observation
# that matches.
fhir_resources.delete_resource(service_account_json, base_url, project_id,
cloud_region, dataset_id, fhir_store_id,
'Observation', observation_resource_id)
out, _ = capsys.readouterr()
assert "Conditionally updated" in out
def test_delete_patient(test_dataset, test_fhir_store, test_patient, capsys):
fhir_resources.delete_resource(
project_id,
location,
dataset_id,
fhir_store_id,
resource_type,
test_patient,
)
out, _ = capsys.readouterr()
assert "Deleted Patient resource" in out
def test_get_patient_everything(test_dataset, test_fhir_store, capsys):
fhir_resources.create_resource(
service_account_json,
base_url,
project_id,
cloud_region,
dataset_id,
fhir_store_id,
resource_type)
resource = fhir_resources.search_resources_get(
service_account_json,
base_url,
project_id,
cloud_region,
dataset_id,
fhir_store_id,
resource_type)
# Save the resource_id from the object returned by search_resources()
# because you need to pass it into get_resource() and delete_resource()
resource_id = resource["entry"][0]["resource"]["id"]
fhir_resources.get_patient_everything(
service_account_json,
base_url,
project_id,
cloud_region,
dataset_id,
fhir_store_id,
resource_id)
fhir_resources.delete_resource(
service_account_json,
base_url,
project_id,
cloud_region,
dataset_id,
fhir_store_id,
resource_type,
resource_id)
out, _ = capsys.readouterr()
assert 'id' in out
def test_get_patient_everything(test_dataset, test_fhir_store, capsys):
response = fhir_resources.create_resource(
service_account_json,
base_url,
project_id,
cloud_region,
dataset_id,
fhir_store_id,
resource_type)
# Save the resource_id because you need to pass it into later tests
resource_id = response.json()['id']
fhir_resources.search_resources_get(
service_account_json,
base_url,
project_id,
cloud_region,
dataset_id,
fhir_store_id,
resource_type)
fhir_resources.get_patient_everything(
service_account_json,
base_url,
project_id,
cloud_region,
dataset_id,
fhir_store_id,
resource_id)
fhir_resources.delete_resource(
service_account_json,
base_url,
project_id,
cloud_region,
dataset_id,
fhir_store_id,
resource_type,
resource_id)
out, _ = capsys.readouterr()
assert 'id' in out
def test_get_patient_everything(test_dataset, test_fhir_store, capsys):
response = fhir_resources.create_resource(
service_account_json,
base_url,
project_id,
cloud_region,
dataset_id,
fhir_store_id,
resource_type)
# Save the resource_id because you need to pass it into later tests
resource_id = response.json()['id']
fhir_resources.search_resources_get(
service_account_json,
base_url,
project_id,
cloud_region,
dataset_id,
fhir_store_id,
resource_type)
fhir_resources.get_patient_everything(
service_account_json,
base_url,
project_id,
cloud_region,
dataset_id,
fhir_store_id,
resource_id)
fhir_resources.delete_resource(
service_account_json,
base_url,
project_id,
cloud_region,
dataset_id,
fhir_store_id,
resource_type,
resource_id)
out, _ = capsys.readouterr()
assert 'id' in out
def clean_up():
try:
fhir_resources.delete_resource(
project_id,
location,
dataset_id,
fhir_store_id,
resource_type,
patient_resource_id,
)
except HttpError as err:
# The API returns 200 whether the resource exists or was
# successfully deleted or not.
if err.resp.status > 200:
print(
"Got exception {} while deleting FHIR store".format(err.resp.status)
)
else:
raise
def test_CRUD_search_resource(test_dataset, test_fhir_store, capsys):
fhir_resources.create_resource(service_account_json, base_url, project_id,
cloud_region, dataset_id, fhir_store_id,
resource_type)
resource = fhir_resources.search_resources_get(service_account_json,
base_url, project_id,
cloud_region, dataset_id,
fhir_store_id,
resource_type)
# Save the resource_id from the object returned by search_resources()
# because you need to pass it into get_resource() and delete_resource()
resource_id = resource["entry"][0]["resource"]["id"]
fhir_resources.get_resource(service_account_json, base_url, project_id,
cloud_region, dataset_id, fhir_store_id,
resource_type, resource_id)
fhir_resources.update_resource(service_account_json, base_url, project_id,
cloud_region, dataset_id, fhir_store_id,
resource_type, resource_id)
fhir_resources.patch_resource(service_account_json, base_url, project_id,
cloud_region, dataset_id, fhir_store_id,
resource_type, resource_id)
fhir_resources.delete_resource(service_account_json, base_url, project_id,
cloud_region, dataset_id, fhir_store_id,
resource_type, resource_id)
out, _ = capsys.readouterr()
# Check that create/search worked
assert 'Created Resource' in out
assert 'id' in out
assert 'search' in out
assert resource_id in out
assert 'Deleted Resource' in out
def test_patient():
patient_response = fhir_resources.create_patient(
service_account_json,
base_url,
project_id,
cloud_region,
dataset_id,
fhir_store_id,
)
patient_resource_id = patient_response.json()["id"]
yield patient_resource_id
# Clean up
fhir_resources.delete_resource(
service_account_json,
base_url,
project_id,
cloud_region,
dataset_id,
fhir_store_id,
resource_type,
patient_resource_id,
)
def test_CRUD_search_resource(test_dataset, test_fhir_store, capsys):
response = fhir_resources.create_resource(service_account_json, base_url,
project_id, cloud_region,
dataset_id, fhir_store_id,
resource_type)
# Save the resource_id because you need to pass it into later tests
resource_id = response.json()['id']
fhir_resources.search_resources_get(service_account_json, base_url,
project_id, cloud_region, dataset_id,
fhir_store_id, resource_type)
fhir_resources.get_resource(service_account_json, base_url, project_id,
cloud_region, dataset_id, fhir_store_id,
resource_type, resource_id)
fhir_resources.update_resource(service_account_json, base_url, project_id,
cloud_region, dataset_id, fhir_store_id,
resource_type, resource_id)
fhir_resources.conditional_update_resource(service_account_json, base_url,
project_id, cloud_region,
dataset_id, fhir_store_id,
resource_type, resource_id)
fhir_resources.patch_resource(service_account_json, base_url, project_id,
cloud_region, dataset_id, fhir_store_id,
resource_type, resource_id)
fhir_resources.conditional_patch_resource(service_account_json, base_url,
project_id, cloud_region,
dataset_id, fhir_store_id,
resource_type, resource_id)
history = fhir_resources.list_resource_history(service_account_json,
base_url, project_id,
cloud_region, dataset_id,
fhir_store_id,
resource_type, resource_id)
fhir_resources.get_resource_history(
service_account_json, base_url, project_id, cloud_region, dataset_id,
fhir_store_id, resource_type, resource_id,
history['entry'][-1]['resource']['meta']['versionId'])
fhir_resources.delete_resource_purge(service_account_json, base_url,
project_id, cloud_region, dataset_id,
fhir_store_id, resource_type,
resource_id)
fhir_resources.conditional_delete_resource(service_account_json, base_url,
project_id, cloud_region,
dataset_id, fhir_store_id,
resource_type, resource_id)
fhir_resources.delete_resource(service_account_json, base_url, project_id,
cloud_region, dataset_id, fhir_store_id,
resource_type, resource_id)
out, _ = capsys.readouterr()
# Check that create/search worked
assert 'Created Resource' in out
assert 'id' in out
assert 'Conditionally updated' in out
assert 'search' in out
assert 'link' in out
assert ' deleted' in out
assert resource_id in out
assert 'Deleted Resource' in out
def test_CRUD_search_resource(test_dataset, test_fhir_store, capsys):
fhir_resources.create_resource(
service_account_json,
base_url,
project_id,
cloud_region,
dataset_id,
fhir_store_id,
resource_type)
resource = fhir_resources.search_resources_get(
service_account_json,
base_url,
project_id,
cloud_region,
dataset_id,
fhir_store_id,
resource_type)
# Save the resource_id from the object returned by search_resources()
# because you need to pass it into get_resource() and delete_resource()
resource_id = resource["entry"][0]["resource"]["id"]
fhir_resources.get_resource(
service_account_json,
base_url,
project_id,
cloud_region,
dataset_id,
fhir_store_id,
resource_type,
resource_id)
fhir_resources.update_resource(
service_account_json,
base_url,
project_id,
cloud_region,
dataset_id,
fhir_store_id,
resource_type,
resource_id)
fhir_resources.patch_resource(
service_account_json,
base_url,
project_id,
cloud_region,
dataset_id,
fhir_store_id,
resource_type,
resource_id)
fhir_resources.delete_resource(
service_account_json,
base_url,
project_id,
cloud_region,
dataset_id,
fhir_store_id,
resource_type,
resource_id)
out, _ = capsys.readouterr()
# Check that create/search worked
assert 'Created Resource' in out
assert 'id' in out
assert 'search' in out
assert resource_id in out
assert 'Deleted Resource' in out
def test_CRUD_search_resource(test_dataset, test_fhir_store, capsys):
response = fhir_resources.create_resource(
service_account_json,
base_url,
project_id,
cloud_region,
dataset_id,
fhir_store_id,
resource_type)
# Save the resource_id because you need to pass it into later tests
resource_id = response.json()['id']
fhir_resources.search_resources_get(
service_account_json,
base_url,
project_id,
cloud_region,
dataset_id,
fhir_store_id,
resource_type)
fhir_resources.get_resource(
service_account_json,
base_url,
project_id,
cloud_region,
dataset_id,
fhir_store_id,
resource_type,
resource_id)
fhir_resources.update_resource(
service_account_json,
base_url,
project_id,
cloud_region,
dataset_id,
fhir_store_id,
resource_type,
resource_id)
fhir_resources.conditional_update_resource(
service_account_json,
base_url,
project_id,
cloud_region,
dataset_id,
fhir_store_id,
resource_type,
resource_id)
fhir_resources.patch_resource(
service_account_json,
base_url,
project_id,
cloud_region,
dataset_id,
fhir_store_id,
resource_type,
resource_id)
fhir_resources.conditional_patch_resource(
service_account_json,
base_url,
project_id,
cloud_region,
dataset_id,
fhir_store_id,
resource_type,
resource_id)
history = fhir_resources.list_resource_history(
service_account_json,
base_url,
project_id,
cloud_region,
dataset_id,
fhir_store_id,
resource_type,
resource_id)
fhir_resources.get_resource_history(
service_account_json,
base_url,
project_id,
cloud_region,
dataset_id,
fhir_store_id,
resource_type,
resource_id,
history['entry'][-1]['resource']['meta']['versionId'])
fhir_resources.delete_resource_purge(
service_account_json,
base_url,
project_id,
cloud_region,
dataset_id,
fhir_store_id,
resource_type,
resource_id)
fhir_resources.conditional_delete_resource(
service_account_json,
base_url,
project_id,
cloud_region,
dataset_id,
fhir_store_id,
resource_type,
resource_id)
fhir_resources.delete_resource(
service_account_json,
base_url,
project_id,
cloud_region,
dataset_id,
fhir_store_id,
resource_type,
resource_id)
out, _ = capsys.readouterr()
# Check that create/search worked
assert 'Created Resource' in out
assert 'id' in out
assert 'Conditionally updated' in out
assert 'search' in out
assert 'link' in out
assert ' deleted' in out
assert resource_id in out
assert 'Deleted Resource' in out
