def test_deregister():
test_reg = fsa._FS_SINGLETON.handler_reg
test_spec_name = str(uuid.uuid4())
fsa.register_handler(test_spec_name, SynHandlerMod)
assert test_reg[test_spec_name] is SynHandlerMod
fsa.deregister_handler(test_spec_name)
assert test_spec_name not in test_reg
def dtype(self):
return self.pixel_type
@property
def shape(self):
return self.frame_shape
class LazyEigerHandler(HandlerBase):
specs = {'AD_EIGER'} | HandlerBase.specs
def __init__(self, fpath, frame_per_point, mapping=None):
# create pims handler
self.vals_dict = EIGER_MD_DICT.copy()
if mapping is not None:
self.vals_dict.update(mapping)
self._base_path = fpath
self.fpp = frame_per_point
def __call__(self, seq_id):
import h5py
master_path = '{}_{}_master.h5'.format(self._base_path, seq_id)
md = {}
print('hdf5 path = %s' % master_path)
with h5py.File(master_path, 'r') as f:
md = {k: f[v].value for k, v in self.vals_dict.items()}
# TODO Return a multi-dimensional PIMS seq.
return FixedEigerImages(master_path, md)
deregister_handler('AD_EIGER')
register_handler('AD_EIGER', LazyEigerHandler)
# 1 -- gap
# 2 -- dead
# 4 -- under-responsive
# 8 -- over-responsive
# 16 -- noisy
pixel_mask = md['pixel_mask']
pixel_mask[pixel_mask > 0] = 1
pixel_mask[pixel_mask == 0] = 2
pixel_mask[pixel_mask == 1] = 0
pixel_mask[pixel_mask == 2] = 1
md['framerate'] = 1. / md['frame_time']
# TODO Return a multi-dimensional PIMS seq
return FixedEigerImages(master_path, md)
deregister_handler('AD_EIGER')
_HANDLER_CACHE.clear()
register_handler('AD_EIGER', LazyEigerHandler)
def print_attrs(name, obj):
print(name)
for key, val in obj.attrs.items():
print(" %s: %s" % (key, val))
###################################################
##for image process
###################################################
def teardown_module(module):
fs_teardown()
deregister_handler('AD_HDF5')
deregister_handler('AD_HDF5_SWMR')
deregister_handler('AD_HDF5_TS')
deregister_handler('AD_HDF5_SWMR_TS')
class FixedAreaDetectorTiffHandler(HandlerBase):
specs = {'AD_TIFF'} | HandlerBase.specs
def __init__(self, fpath, template, filename, frame_per_point=1):
self._path = fpath
self._fpp = frame_per_point
self._template = template.replace('_%6.6d', '*')
self._filename = self._template % (self._path,
filename)
self._image_sequence = pims.ImageSequence(self._filename)
def __call__(self, point_number):
start = int(point_number * self._fpp)
stop = int((point_number + 1) * self._fpp)
if stop > len(self._image_sequence):
# if asking for an image past the end, make sure we have an up
# to
# date list of the existing files
self._image_sequence = pims.ImageSequence(self._filename)
if stop > len(self._image_sequence):
# if we _still_ don't have enough files, raise
raise IntegrityError("Seeking Frame {0} out of {1} "
" frames.".format(stop, len(self._image_sequence)))
return np.asarray(list(self._image_sequence[start:stop])).squeeze()
import databroker # so that built-in handlers are registered
from filestore.api import deregister_handler, register_handler
deregister_handler('AD_TIFF')
register_handler('AD_TIFF', FixedAreaDetectorTiffHandler)
# 1 -- gap
# 2 -- dead
# 4 -- under-responsive
# 8 -- over-responsive
# 16 -- noisy
pixel_mask = md["pixel_mask"]
pixel_mask[pixel_mask > 0] = 1
pixel_mask[pixel_mask == 0] = 2
pixel_mask[pixel_mask == 1] = 0
pixel_mask[pixel_mask == 2] = 1
md["framerate"] = 1.0 / md["frame_time"]
# TODO Return a multi-dimensional PIMS seq
return FixedEigerImages(master_path, md)
deregister_handler("AD_EIGER")
_HANDLER_CACHE.clear()
register_handler("AD_EIGER", LazyEigerHandler)
def print_attrs(name, obj):
print(name)
for key, val in obj.attrs.items():
print(" %s: %s" % (key, val))
###################################################
##for image process
###################################################
def teardown():
deregister_handler('AD_HDF5')
db_disconnect()
# if we know about a connection, drop the database
if conn:
conn.drop_database(db_name)
def teardown_module(module):
fs_teardown()
deregister_handler('syn-mod')