def sieve(infile, outfile, schema, property, type):
try:
for entity in read_entities(infile):
entity = sieve_entity(entity, schema, property, type)
if entity is not None:
write_object(outfile, entity)
except BrokenPipeError:
raise click.Abort()
def import_cellebrite(infile, outfile, owner, country):
try:
converter = CellebriteConverter(infile, owner, country)
for entity in converter.convert():
if entity.id is not None:
write_object(outfile, entity)
except BrokenPipeError:
raise click.Abort()
def enrich(infile, outfile, enricher):
enricher = load_enricher(enricher)
try:
for entity in read_entities(infile):
for match in enricher.enrich_entity_raw(entity):
write_object(outfile, match)
except BrokenPipeError:
raise click.Abort()
def sign(infile, outfile, signature):
ns = Namespace(signature)
try:
for entity in read_entities(infile):
signed = ns.apply(entity)
write_object(outfile, signed)
except BrokenPipeError:
raise click.Abort()
def expand(infile, outfile, enricher):
enricher = load_enricher(enricher)
try:
for entity in read_entities(infile):
for expanded in enricher.expand_entity(entity):
write_object(outfile, expanded)
except BrokenPipeError:
raise click.Abort()
def match_decide(infile, outfile, threshold):
try:
for match in Match.from_file(model, infile):
if match.decision is None:
if match.score is not None and match.score > threshold:
match.decision = True
write_object(outfile, match)
except BrokenPipeError:
raise click.Abort()
def validate(infile, outfile):
try:
for entity in read_entities(infile, cleaned=False):
clean = model.make_entity(entity.schema)
clean.id = entity.id
for (prop, value) in entity.itervalues():
clean.add(prop, value)
write_object(outfile, clean)
except BrokenPipeError:
raise click.Abort()
def expand(infile, outfile, enricher):
enricher = load_enricher(enricher)
try:
while True:
entity = read_entity(infile)
if entity is None:
break
for entity in enricher.expand_entity(entity):
write_object(outfile, entity)
except BrokenPipeError:
raise click.Abort()
def enrich(infile, outfile, enricher):
enricher = load_enricher(enricher)
try:
while True:
entity = read_entity(infile)
if entity is None:
break
for match in enricher.enrich_entity_raw(entity):
write_object(outfile, match)
except BrokenPipeError:
raise click.Abort()
def sign(infile, outfile, signature):
ns = Namespace(signature)
try:
while True:
entity = read_entity(infile)
if entity is None:
break
signed = ns.apply(entity)
write_object(outfile, signed)
except BrokenPipeError:
raise click.Abort()
def link(infile, outfile, matches):
try:
linker = Linker(model)
for match in Match.from_file(model, matches):
linker.add(match)
log.info("Linker: %s clusters.", len(linker.lookup))
for entity in read_entities(infile):
entity = linker.apply(entity)
write_object(outfile, entity)
except BrokenPipeError:
raise click.Abort()
def match_entities(infile, outfile, all):
try:
for match in Match.from_file(model, infile):
if not all and match.decision is not True:
continue
if match.canonical is not None:
write_object(outfile, match.canonical)
if match.entity is not None:
write_object(outfile, match.entity)
except BrokenPipeError:
raise click.Abort()
def run_mapping(outfile, mapping_yaml):
config = load_mapping_file(mapping_yaml)
try:
for dataset, meta in config.items():
for mapping in keys_values(meta, 'queries', 'query'):
entities = model.map_entities(mapping, key_prefix=dataset)
for entity in entities:
write_object(outfile, entity)
except BrokenPipeError:
raise click.Abort()
except Exception as exc:
raise click.ClickException(str(exc))
def make_entities(db_path, outfile):
db = dataset.connect("sqlite:///%s" % db_path)
store = Dataset("temp", database_uri="sqlite://")
writer = store.bulk()
write_edges(writer, db)
write_addresses(writer, db)
write_nodes(writer, db["entity"], "Company")
write_nodes(writer, db["intermediary"])
write_nodes(writer, db["officer"])
for entity in store.iterate():
write_object(outfile, entity)
def import_ocds(infile, outfile):
try:
while True:
line = infile.readline()
if not line:
return
record = json.loads(line)
for entity in convert_record(record):
if entity.id is not None:
write_object(outfile, entity)
except BrokenPipeError:
raise click.Abort()
def result_entities():
try:
stdin = click.get_text_stream('stdin')
stdout = click.get_text_stream('stdout')
while True:
result = read_result(stdin)
if result is None:
break
for entity in result.entities:
write_object(stdout, entity)
except BrokenPipeError:
raise click.Abort()
def validate(infile, outfile):
try:
while True:
entity = read_entity(infile)
if entity is None:
break
clean = model.make_entity(entity.schema)
clean.id = entity.id
for (prop, value) in entity.itervalues():
clean.add(prop, value)
write_object(outfile, clean)
except BrokenPipeError:
raise click.Abort()
def auto_match(threshold):
try:
stdin = click.get_text_stream('stdin')
stdout = click.get_text_stream('stdout')
while True:
result = read_result(stdin)
if result is None:
break
if result.score > threshold:
recon = Recon(result.subject, result.candidate, Recon.MATCH)
write_object(stdout, recon)
except BrokenPipeError:
raise click.Abort()
def import_ocds():
stdin = click.get_text_stream('stdin')
stdout = click.get_text_stream('stdout')
try:
while True:
line = stdin.readline()
if not line:
return
record = json.loads(line)
for entity in convert_record(record):
if entity.id is not None:
write_object(stdout, entity)
except BrokenPipeError:
raise click.Abort()
def run_mapping(outfile, mapping_yaml, sign=True):
config = load_mapping_file(mapping_yaml)
try:
for dataset, meta in config.items():
ns = Namespace(dataset)
for mapping in keys_values(meta, "queries", "query"):
entities = model.map_entities(mapping, key_prefix=dataset)
for entity in entities:
if sign:
entity = ns.apply(entity)
write_object(outfile, entity)
except BrokenPipeError:
raise click.Abort()
except Exception as exc:
raise click.ClickException(str(exc))
def expand(enricher):
enricher = load_enricher(enricher)
try:
stdin = click.get_text_stream('stdin')
stdout = click.get_text_stream('stdout')
while True:
entity = read_entity(stdin)
if entity is None:
break
result = enricher.expand_entity(entity)
write_object(stdout, result)
except BrokenPipeError:
raise click.Abort()
finally:
enricher.close()
def aggregate(infile, outfile):
buffer = {}
namespace = Namespace(None)
try:
for entity in read_entities(infile):
entity = namespace.apply(entity)
if entity.id in buffer:
buffer[entity.id].merge(entity)
else:
buffer[entity.id] = entity
for entity in buffer.values():
write_object(outfile, entity)
except BrokenPipeError:
raise click.Abort()
def export(self):
"""Generate exported files for the dataset."""
try:
self.bind()
ftm_path = self.get_artifact_path("entities.ftm.json")
ftm_path.parent.mkdir(exist_ok=True, parents=True)
self.log.info(
"Writing entities to line-based JSON",
path=ftm_path,
entities=len(self.dataset.store),
)
with open(ftm_path, "w") as fh:
for entity in self.dataset.store:
write_object(fh, entity)
finally:
self.close()
def stream_mapping(infile, outfile, mapping_yaml):
sources = []
config = load_mapping_file(mapping_yaml)
for dataset, meta in config.items():
for data in keys_values(meta, 'queries', 'query'):
query = model.make_mapping(data, key_prefix=dataset)
source = StreamSource(query, data)
sources.append(source)
try:
for record in StreamSource.read_csv(infile):
for source in sources:
if source.check_filters(record):
entities = source.query.map(record)
for entity in entities.values():
write_object(outfile, entity)
except BrokenPipeError:
raise click.Abort()
def filter_results(recon):
try:
matches = set()
for recon in Recon.from_file(recon):
if recon.judgement == Recon.MATCH:
matches.add(recon.subject)
stdin = click.get_text_stream('stdin')
stdout = click.get_text_stream('stdout')
while True:
result = read_result(stdin)
if result is None:
break
if result.candidate is None:
continue
candidate = NS.apply(result.candidate)
if candidate.id in matches:
write_object(stdout, result)
except BrokenPipeError:
raise click.Abort()
def aggregate():
buffer = {}
namespace = Namespace(None)
try:
stdin = click.get_text_stream('stdin')
while True:
entity = read_entity(stdin)
if entity is None:
break
entity = namespace.apply(entity)
if entity.id in buffer:
buffer[entity.id].merge(entity)
else:
buffer[entity.id] = entity
stdout = click.get_text_stream('stdout')
for entity in buffer.values():
write_object(stdout, entity)
except BrokenPipeError:
raise click.Abort()
def apply_recon(recon):
try:
linker = EntityLinker()
for recon in Recon.from_file(recon):
if recon.judgement == Recon.MATCH:
linker.add(recon.subject, recon.canonical)
log.info("Linker: %s clusters.", len(linker.clusters))
stdin = click.get_text_stream('stdin')
stdout = click.get_text_stream('stdout')
while True:
entity = read_entity(stdin)
if entity is None:
break
entity = NS.apply(entity)
outgoing = linker.apply(entity)
if outgoing.id != entity.id:
outgoing.add('sameAs', entity.id, quiet=True)
write_object(stdout, outgoing)
except BrokenPipeError:
raise click.Abort()
def stream_mapping(infile, outfile, mapping_yaml, sign=True):
sources = []
config = load_mapping_file(mapping_yaml)
for dataset, meta in config.items():
for data in keys_values(meta, "queries", "query"):
query = model.make_mapping(data, key_prefix=dataset)
source = StreamSource(query, data)
sources.append((dataset, source))
try:
for record in StreamSource.read_csv(infile):
for (dataset, source) in sources:
ns = Namespace(dataset)
if source.check_filters(record):
entities = source.query.map(record)
for entity in entities.values():
if sign:
entity = ns.apply(entity)
write_object(outfile, entity)
except BrokenPipeError:
raise click.Abort()
def stream_mapping(infile, outfile, mapping_yaml, sign=True):
queries: List[Tuple[str, QueryMapping]] = []
config = load_mapping_file(mapping_yaml)
for dataset, meta in config.items():
for data in keys_values(meta, "queries", "query"):
data.pop("database", None)
data["csv_url"] = "/dev/null"
query = model.make_mapping(data, key_prefix=dataset)
queries.append((dataset, query))
try:
for record in CSVSource.read_csv(infile):
for (dataset, query) in queries:
ns = Namespace(dataset)
if query.source.check_filters(record):
entities = query.map(record)
for entity in entities.values():
if sign:
entity = ns.apply(entity)
write_object(outfile, entity)
except BrokenPipeError:
raise click.Abort()
def dump_entities(foreign_id, outfile):
"""Export FtM entities for the given collection."""
collection = get_collection(foreign_id)
for entity in iter_proxies(collection_id=collection.id, excludes=['text']):
write_object(outfile, entity)
