def testRun(self):
model = load_cbmodel(SMALL_TEST_MODEL, flavor='cobra')
solution = gene_deletion(model, DOUBLE_GENE_KO, 'pFBA')
self.assertEqual(solution.status, Status.OPTIMAL)
self.assertAlmostEqual(solution.values[model.biomass_reaction],
DOUBLE_KO_GROWTH_RATE, 2)
self.assertAlmostEqual(solution.values['R_EX_succ_e'],
DOUBLE_KO_SUCC_EX, 2)
def testRun(self):
model = load_cbmodel(SMALL_TEST_MODEL, flavor='cobra')
solution = gene_deletion(model, ROOM_GENE_KO, 'ROOM')
self.assertEqual(solution.status, Status.OPTIMAL)
self.assertTrue(solution.values['R_EX_succ_e'] > 1e-3)
def testRun(self):
model = load_cbmodel(SMALL_TEST_MODEL, flavor='cobra')
solution = gene_deletion(model, ROOM_GENE_KO, 'ROOM')
self.assertEqual(solution.status, Status.OPTIMAL)
self.assertTrue(solution.values['R_EX_succ_e'] > 1e-3)
def testRun(self):
model = load_cbmodel(SMALL_TEST_MODEL, flavor='cobra')
solution = gene_deletion(model, DOUBLE_GENE_KO, 'pFBA')
self.assertEqual(solution.status, Status.OPTIMAL)
self.assertAlmostEqual(solution.values[model.biomass_reaction], DOUBLE_KO_GROWTH_RATE, 2)
self.assertAlmostEqual(solution.values['R_EX_succ_e'], DOUBLE_KO_SUCC_EX, 2)