def __init__(self, folder, directory, gene_list_file, *args):
super(Read_Depth_Gui, self).__init__(*args)
self.setupUi(self)
self.input_folder = folder
self.interval = 100
self.interval_spin.setValue(100)
self.allowed_mismatches = 1
self.directory = directory
self.gene_list_file = gene_list_file
self.fileio = f.fileio()
self.list_of_reads = []
self.plot = plot.RDPlot("Base Pair", "# Hits")
self.selected_accession_number_name = ''
self.selected_gene = {}
self.dataset_name = '-- Select --'
self.gene_list = OrderedDict()
self.datasets_cache = OrderedDict()
self.accession_numbers_list = QtCore.QStringList()
self._initialize_ui_elements()
self.process = process.process()
self.read_list_thread = GetReadList_Thread(self.directory,
self.input_folder,
self.dataset_name,
self.selected_gene, self)
self.connect(self.read_list_thread, QtCore.SIGNAL("GeneListFinished"),
self.dataset_loaded)
self.calculate_depth_thread = CalculateDepth_Thread(self)
self.connect(self.calculate_depth_thread,
QtCore.SIGNAL("CalculateDepthFinished"),
self.load_table_w_data)
def __init__(self, folder, directory, gene_list_file, *args):
super(Read_Depth_Gui, self).__init__(*args)
self.setupUi(self)
self.input_folder = folder
self.interval = 100
self.interval_spin.setValue(100)
self.allowed_mismatches = 1
self.directory = directory
self.gene_list_file = gene_list_file
self.fileio = f.fileio()
self.list_of_reads = []
self.plot = plot.RDPlot("Base Pair", "# Hits")
self.selected_accession_number_name = ''
self.selected_gene = {}
self.dataset_name = '-- Select --'
self.gene_list = OrderedDict()
self.datasets_cache = OrderedDict()
self.accession_numbers_list = QtCore.QStringList()
self._initialize_ui_elements()
self.process = process.process()
self.read_list_thread = GetReadList_Thread(self.directory, self.input_folder, self.dataset_name,
self.selected_gene, self)
self.connect(self.read_list_thread, QtCore.SIGNAL("GeneListFinished"), self.dataset_loaded)
self.calculate_depth_thread = CalculateDepth_Thread(self)
self.connect(self.calculate_depth_thread, QtCore.SIGNAL("CalculateDepthFinished"), self.load_table_w_data)
def __init__(self, parent):
QtCore.QThread.__init__(self, parent)
self.process = process.process()
self.parent = parent
def __init__(self, parent):
QtCore.QThread.__init__(self, parent)
self.process = process.process()
self.parent = parent
def __init__(self, f, p):
self.fileio = f
self.printio = p
self.process = process.process()
self.blast_pipe = None
self._spin = None
def __init__(self, f, p):
self.fileio = f
self.printio = p
self.process = process.process()
self.blast_pipe = None
self._spin = None
