def calcMass(self):
'''
This function calculate mass from three character aminoacids
sequence notation.
'''
result = 0
codon = ""
for char in range(len(self.sequence)):
codon += self.sequence[char]
if char % 3 == 2:
for three, mass in mass_dict(
os.path.join(os.getcwd(),
"docs/baseMass.def")).items():
if three == codon:
result += mass
codon = ""
return round(result, 2)
def calcMass(self):
'''
This function calculate mass from one character aminoacid sequence
notation.
'''
result = 0
for char in self.sequence:
for amino, letter in acronyms(
os.path.join(os.getcwd(), "docs/three.def")).items():
for sign in letter:
if sign == char:
codon = amino
for three, mass in mass_dict(
os.path.join(os.getcwd(),
"docs/baseMass.def")).items():
if three == codon:
result += mass
return round(result, 2)
def setUp(self):
self.fake_mass_dict = mass_dict(os.path.join(os.getcwd(),
"docs/baseMass.def"))