def from_table(form):
raw_table = pd.read_csv(form.input_file.data,
delimiter='\t',
comment='#',
header=0,
index_col=0).dropna(how='all')
root = models.Tree.objects().get(source=form.target.data)['tree']
nodes = tree.get_nodes(root)
entry_to_layer = dict(map(lambda x: (x['entry'], x['layer']), nodes))
profile = []
for entry in raw_table.index:
profile.append({
'entry': entry,
'layer': analysis.get_layer(entry, entry_to_layer),
'values': [raw_table.ix[entry].tolist()]
})
colors = []
if form.color_file.data:
colors = pd.read_csv(form.color_file.data, header=None,
delimiter='\t').as_matrix().tolist()
utcnow = datetime.datetime.utcnow()
return models.Profile(
profile_id=uuid.uuid4(),
profile=profile,
series=['Raw'],
columns=[raw_table.columns.tolist()],
colors=colors,
target=form.target.data,
description=form.description.data,
added_at=utcnow,
expire_at=utcnow +
datetime.timedelta(days=app.config['FUNCTREE_PROFILE_TTL_DAYS']),
private=form.private.data).save().profile_id
def from_json(form):
raw_data = json.load(form.input_file.data)
utcnow = datetime.datetime.utcnow()
return models.Profile(
profile_id=uuid.uuid4(),
profile=raw_data[0]['profile'],
series=raw_data[0]['series'],
columns=raw_data[0]['columns'],
colors=raw_data[0]['colors'],
target=form.target.data,
description=form.description.data,
added_at=utcnow,
expire_at=utcnow +
datetime.timedelta(days=app.config['FUNCTREE_PROFILE_TTL_DAYS']),
private=form.private.data).save().profile_id
def route_init_profiles():
f = open(os.path.join(os.path.dirname(os.path.abspath(__file__)), 'static/data/example/profile.json'), 'r')
input_data = json.load(f)[0]
models.Profile.objects.all().delete()
models.Profile(
profile_id=uuid.uuid4(),
profile=input_data['profile'],
series=input_data['series'],
columns=input_data['columns'],
target=input_data['target'],
description=input_data['description'],
added_at=datetime.datetime.utcnow(),
expire_at=datetime.datetime(2101, 1, 1),
private=False,
locked=True
).save()
return flask.redirect(flask.url_for('route_admin'))
def from_table(form):
result = calc_coverages(f=form.input_file.data, target=form.target.data)
colors = []
if form.color_file.data:
colors = pd.read_csv(form.color_file.data, header=None,
delimiter='\t').as_matrix().tolist()
utcnow = datetime.datetime.utcnow()
return models.Profile(
profile_id=uuid.uuid4(),
profile=result['profile'],
series=result['series'],
columns=result['columns'],
colors=colors,
target=form.target.data,
description=form.description.data,
added_at=utcnow,
expire_at=utcnow +
datetime.timedelta(days=app.config['FUNCTREE_PROFILE_TTL_DAYS']),
private=form.private.data).save().profile_id