예제 #1
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    def _validate_security_rules(self) -> None:
        """Checks if the security rules defined in the plugin configuration are valid boolean expressions or raises
        a ConfigurationError exception otherwise."""

        def _get_error_msg_for(rule_name: str) -> str:
            return f"Invalid boolean expression for '{rule_name}' in {self.label} file source plugin configuration."

        if self.requires_roles and not BooleanExpressionEvaluator.is_valid_expression(self.requires_roles):
            raise ConfigurationError(_get_error_msg_for("requires_roles"))
        if self.requires_groups and not BooleanExpressionEvaluator.is_valid_expression(self.requires_groups):
            raise ConfigurationError(_get_error_msg_for("requires_groups"))
예제 #2
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파일: ldap_ad.py 프로젝트: davebx/toolshed
    def check_config(self, username, email, options):
        ok = True
        failure_mode = False  # reject but continue
        if options.get('continue-on-failure', 'False') == 'False':
            failure_mode = None  # reject and do not continue

        if string_as_bool(options.get('login-use-username', False)):
            if not username:
                log.debug(
                    'LDAP authenticate: username must be used to login, cannot be None'
                )
                return ok, failure_mode
        else:
            if not email:
                log.debug(
                    'LDAP authenticate: email must be used to login, cannot be None'
                )
                return ok, failure_mode

        auto_create_roles = string_as_bool(
            options.get('auto-create-roles', False))
        auto_create_groups = string_as_bool(
            options.get('auto-create-groups', False))
        self.auto_create_roles_or_groups = auto_create_roles or auto_create_groups
        auto_assign_roles_to_groups_only = string_as_bool(
            options.get('auto-assign-roles-to-groups-only', False))
        if auto_assign_roles_to_groups_only and not (auto_create_roles
                                                     and auto_create_groups):
            raise ConfigurationError(
                "If 'auto-assign-roles-to-groups-only' is True, auto-create-roles and "
                "auto-create-groups have to be True as well.")

        self.role_search_attribute = options.get(self.role_search_option, None)
        return ok, failure_mode
예제 #3
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 def make_manager(db_url, database):
     if db_url.startswith('postgres'):
         return PosgresDatabaseManager(db_url, database)
     elif db_url.startswith('sqlite'):
         return SqliteDatabaseManager(db_url, database)
     elif db_url.startswith('mysql'):
         return MySQLDatabaseManager(db_url, database)
     else:
         raise ConfigurationError(f'Invalid database URL: {db_url}')
예제 #4
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파일: config.py 프로젝트: maikenp/galaxy
 def check(self):
     # Check that required directories exist; attempt to create otherwise
     paths_to_check = [
         self.file_path,
         self.hgweb_config_dir,
         self.template_path,
         self.tool_data_path,
         self.template_cache_path,
         os.path.join(self.tool_data_path, 'shared', 'jars'),
     ]
     for path in paths_to_check:
         self._ensure_directory(path)
     # Check that required files exist.
     if not os.path.isfile(self.datatypes_config):
         raise ConfigurationError('File not found: %s' % self.datatypes_config)
예제 #5
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파일: ldap_ad.py 프로젝트: davebx/toolshed
def _get_subs(d, k, params):
    if k not in d or not d[k]:
        raise ConfigurationError("Missing '%s' parameter in LDAP options" % k)
    return str(d[k]).format(**params)
예제 #6
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파일: ldap_ad.py 프로젝트: davebx/toolshed
    def ldap_search(self, email, username, options):
        config_ok, failure_mode = self.check_config(username, email, options)
        if ldap is None:
            raise RuntimeError("Failed to load LDAP module: %s",
                               str(ldap_import_exc))

        if not config_ok:
            return failure_mode, None

        if self.auto_create_roles_or_groups and self.role_search_attribute is None:
            raise ConfigurationError(
                "If 'auto-create-roles' or 'auto-create-groups' is True, a '%s' attribute has to"
                " be provided." % self.role_search_option)

        params = {'email': email, 'username': username}

        try:
            ldap_options_raw = _get_subs(options, 'ldap-options', params)
        except ConfigurationError:
            ldap_options = ()
        else:
            ldap_options = _parse_ldap_options(ldap_options_raw)

        try:
            # setup connection
            ldap.set_option(ldap.OPT_REFERRALS, 0)

            for opt in ldap_options:
                ldap.set_option(*opt)
        except Exception:
            log.exception('LDAP authenticate: set_option exception')
            return (failure_mode, None)

        if 'search-fields' in options:
            try:
                l = ldap.initialize(_get_subs(options, 'server', params))
                l.protocol_version = 3

                if 'search-user' in options:
                    l.simple_bind_s(
                        _get_subs(options, 'search-user', params),
                        _get_subs(options, 'search-password', params))
                else:
                    l.simple_bind_s()

                # setup search
                attributes = [
                    _.strip().format(**params)
                    for _ in options['search-fields'].split(',')
                ]
                if 'search-memberof-filter' in options:
                    attributes.append('memberOf')
                suser = l.search_ext_s(_get_subs(options, 'search-base',
                                                 params),
                                       ldap.SCOPE_SUBTREE,
                                       _get_subs(options, 'search-filter',
                                                 params),
                                       attributes,
                                       timeout=60,
                                       sizelimit=1)

                # parse results
                if suser is None or len(suser) == 0:
                    log.warning(
                        'LDAP authenticate: search returned no results')
                    return (failure_mode, None)
                dn, attrs = suser[0]
                log.debug("LDAP authenticate: dn is %s", dn)
                log.debug("LDAP authenticate: search attributes are %s", attrs)
                if hasattr(attrs, 'has_key'):
                    for attr in attributes:
                        if self.role_search_attribute and attr == self.role_search_attribute[
                                1:-1]:  # strip brackets
                            # keep role names as list
                            params[self.role_search_option] = attrs[attr]
                        elif attr == 'memberOf':
                            params[attr] = attrs[attr]
                        elif attr in attrs:
                            params[attr] = str(attrs[attr][0])
                        else:
                            params[attr] = ""

                if self.auto_create_roles_or_groups and self.role_search_option not in params:
                    raise ConfigurationError(
                        "Missing or mismatching LDAP parameters for %s. Make sure the %s is "
                        "included in the 'search-fields'." %
                        (self.role_search_option, self.role_search_attribute))
                params['dn'] = dn
            except Exception:
                log.exception('LDAP authenticate: search exception')
                return (failure_mode, None)

        return failure_mode, params
예제 #7
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 def raise_error(message):
     log.error(message)
     raise ConfigurationError(message)