def update(self,
trans,
library,
name=None,
description=None,
synopsis=None):
"""
Update the given library
"""
changed = False
if not trans.user_is_admin():
raise exceptions.ItemAccessibilityException(
'Only administrators can update libraries.')
if library.deleted:
raise exceptions.RequestParameterInvalidException(
'You cannot modify a deleted library. Undelete it first.')
if name is not None:
library.name = name
changed = True
# When library is renamed the root folder has to be renamed too.
folder_manager = folders.FolderManager()
folder_manager.update(trans, library.root_folder, name=name)
if description is not None:
library.description = description
changed = True
if synopsis is not None:
library.synopsis = synopsis
changed = True
if changed:
trans.sa_session.add(library)
trans.sa_session.flush()
return library
def __init__(self, app):
super(HistoryContentsController, self).__init__(app)
self.hda_manager = hdas.HDAManager(app)
self.history_manager = histories.HistoryManager(app)
self.folder_manager = folders.FolderManager()
self.hda_serializer = hdas.HDASerializer(app)
self.hda_deserializer = hdas.HDADeserializer(app)
def __init__(self, app: StructuredApp):
super().__init__(app)
self.app = app
self.folder_manager = folders.FolderManager()
self.role_manager = roles.RoleManager(app)
self.ld_manager = library_datasets.LibraryDatasetsManager(app)
self.ldda_manager = lddas.LDDAManager(app)
def __init__(self, app):
super(LibraryDatasetsController, self).__init__(app)
self.folder_manager = folders.FolderManager()
self.role_manager = roles.RoleManager()
def __init__( self, app ):
super( FoldersController, self ).__init__( app )
self.folder_manager = folders.FolderManager()
def __init__(self, app):
super(FolderContentsController, self).__init__(app)
self.folder_manager = folders.FolderManager()
self.hda_manager = managers.hdas.HDAManager(app)
def __init__(self, app):
super(LibrariesController, self).__init__(app)
self.folder_manager = folders.FolderManager()
self.library_manager = libraries.LibraryManager()
self.role_manager = roles.RoleManager(app)
def __init__(self, app):
super().__init__(app)
self.folder_manager = folders.FolderManager()
self.role_manager = roles.RoleManager(app)
def __init__(self, app):
super().__init__(app)
self.folder_manager = folders.FolderManager()
self.hda_manager = managers.hdas.HDAManager(app)
