def uris_to_paths(ctx, uris):
fetcher = ToolLocationFetcher()
paths = []
for uri in uris:
path = fetcher.to_tool_path(uri)
paths.append(path)
return paths
def uris_to_paths(ctx, uris):
"""Fetch multiple URIs to a local path."""
fetcher = ToolLocationFetcher()
paths = []
for uri in uris:
path = fetcher.to_tool_path(uri)
paths.append(path)
return paths
def load_tool_from_config(self, repository_id, full_path):
tool_source = get_tool_source(
full_path,
enable_beta_formats=getattr(self.app.config,
"enable_beta_tool_formats", False),
tool_location_fetcher=ToolLocationFetcher(),
)
try:
tool = create_tool_from_source(config_file=full_path,
app=self.app,
tool_source=tool_source,
repository_id=repository_id,
allow_code_files=False)
tool.assert_finalized(raise_if_invalid=True)
valid = True
error_message = None
except KeyError as e:
tool = None
valid = False
error_message = 'This file requires an entry for "%s" in the tool_data_table_conf.xml file. Upload a file ' % str(
e)
error_message += 'named tool_data_table_conf.xml.sample to the repository that includes the required entry to correct '
error_message += 'this error. '
log.exception(error_message)
except Exception as e:
tool = None
valid = False
error_message = str(e)
log.exception('Caught exception loading tool from %s:', full_path)
return tool, valid, error_message
def uri_to_path(ctx, uri):
"""Fetch URI to a local path."""
fetcher = ToolLocationFetcher()
return fetcher.to_tool_path(uri)
def uri_to_path(ctx, uri):
fetcher = ToolLocationFetcher()
return fetcher.to_tool_path(uri)