def test_unvalidated_datasets(self):
self.options_xml = '''<options><filter type="data_meta" ref="input_bam" key="dbkey"/></options>'''
self.trans.workflow_building_mode = True
assert isinstance(
self.param.from_json(model.HistoryDatasetAssociation(), self.trans,
{"input_bam": basic.RuntimeValue()}),
model.HistoryDatasetAssociation)
def test_nested_context_validation_needed(self):
self.options_xml = '''<options><filter type="data_meta" ref="input_bam" key="dbkey"/></options>'''
# Data ref currently must be same level, if not at top level.
assert self.param.need_late_validation(
self.trans, {
"reference_source": {
"my_name": "42",
"input_bam": basic.RuntimeValue()
}
})
def test_validated_datasets(self):
self.options_xml = '''<options><filter type="data_meta" ref="input_bam" key="dbkey"/></options>'''
try:
self.param.from_html(model.HistoryDatasetAssociation(), self.trans,
{"input_bam": basic.RuntimeValue()})
except ValueError, err:
assert str(
err
) == "Parameter my_name requires a value, but has no legal values defined."
return
def test_dep_runtime_values_need_late_validation(self):
self.options_xml = '''<options><filter type="data_meta" ref="input_bam" key="dbkey"/></options>'''
assert self.param.need_late_validation(
self.trans, {"input_bam": basic.RuntimeValue()})
