def test_repeat_evaluation(self):
repeat = Repeat()
repeat.name = "r"
repeat.inputs = {"thresh": self.tool.test_thresh_param()}
self.tool.set_params({"r": repeat})
self.job.parameters = [JobParameter(name="r", value='''[{"thresh": 4, "__index__": 0},{"thresh": 5, "__index__": 1}]''')]
self.tool._command_line = "prog1 #for $r_i in $r # $r_i.thresh#end for#"
self._set_compute_environment()
command_line, extra_filenames, _ = self.evaluator.build()
self.assertEqual(command_line, "prog1 4 5")
def test_repeat_evaluation( self ):
repeat = Repeat()
repeat.name = "r"
repeat.inputs = { "thresh": self.tool.test_thresh_param() }
self.tool.set_params( { "r": repeat } )
self.job.parameters = [ JobParameter( name="r", value='''[{"thresh": 4, "__index__": 0},{"thresh": 5, "__index__": 1}]''' ) ]
self.tool._command_line = "prog1 #for $r_i in $r # $r_i.thresh#end for#"
self._set_compute_environment()
command_line, extra_filenames, _ = self.evaluator.build( )
self.assertEquals( command_line, "prog1 4 5" )