def __init__(self, config=None, **kwargs):
self.config = config or MockAppConfig(**kwargs)
self.security = self.config.security
self.name = kwargs.get('name', 'galaxy')
self.object_store = objectstore.build_object_store_from_config(
self.config)
self.model = mapping.init("/tmp",
self.config.database_connection,
create_tables=True,
object_store=self.object_store)
self.security_agent = self.model.security_agent
self.visualizations_registry = MockVisualizationsRegistry()
self.tag_handler = tags.GalaxyTagHandler(self.model.context)
self.quota_agent = quota.QuotaAgent(self.model)
self.init_datatypes()
self.job_config = Bunch(dynamic_params=None, destinations={})
self.tool_data_tables = {}
self.dataset_collections_service = None
self.container_finder = NullContainerFinder()
self._toolbox_lock = MockLock()
self.tool_shed_registry = Bunch(tool_sheds={})
self.genome_builds = GenomeBuilds(self)
self.job_manager = NoopManager()
self.application_stack = ApplicationStack()
self.auth_manager = AuthManager(self)
def url_for(*args, **kwds):
return "/mock/url"
self.url_for = url_for
def setUp(self):
self.temp_directory = tempfile.mkdtemp()
self.config = bunch.Bunch(
job_config_file=os.path.join(self.temp_directory, "job_conf.xml"),
use_tasked_jobs=False,
job_resource_params_file="/tmp/fake_absent_path",
config_dict={},
default_job_resubmission_condition="",
server_name="main",
)
self.__write_config_from(SIMPLE_JOB_CONF)
self.app = bunch.Bunch(config=self.config,
job_metrics=MockJobMetrics(),
application_stack=ApplicationStack())
self.__job_configuration = None
def __init__(self, config=None, **kwargs):
self.config = config or MockAppConfig(**kwargs)
self.security = self.config.security
self.name = kwargs.get('name', 'galaxy')
self.object_store = objectstore.build_object_store_from_config(self.config)
self.model = mapping.init("/tmp", "sqlite:///:memory:", create_tables=True, object_store=self.object_store)
self.security_agent = self.model.security_agent
self.visualizations_registry = MockVisualizationsRegistry()
self.tag_handler = tags.GalaxyTagManager(self.model.context)
self.quota_agent = quota.QuotaAgent(self.model)
self.init_datatypes()
self.job_config = Bunch(
dynamic_params=None,
)
self.tool_data_tables = {}
self.dataset_collections_service = None
self.container_finder = NullContainerFinder()
self._toolbox_lock = MockLock()
self.genome_builds = GenomeBuilds(self)
self.job_manager = Bunch(job_queue=NoopQueue())
self.application_stack = ApplicationStack()
def application_stack(self):
if not self.__application_stack:
self.__application_stack = ApplicationStack()
return self.__application_stack