예제 #1
0
def test_meanjz():
    #This is a *very* rough test against a rough estimate of the mean
    qdf= quasiisothermaldf(1./4.,0.2,0.1,1.,1.,
                           pot=MWPotential,aA=aAS,cutcounter=True)
    ldiff= numpy.log(qdf.meanjz(0.9,0.,mc=True))-2.*numpy.log(0.1)-0.2\
        +numpy.log(verticalfreq(MWPotential,0.9))
    #expect this to be smaller than the rough estimate, but not by more than an order of magnitude
    assert ldiff > -1. and ldiff < 0., 'meanjz is not what is expected'
    ldiff= numpy.log(qdf.meanjz(0.5,0.,mc=True))-2.*numpy.log(0.1)-1.0\
        +numpy.log(verticalfreq(MWPotential,0.5))
    assert ldiff > -1. and ldiff < 0., 'meanjz is not what is expected'
    return None
예제 #2
0
 def verticalfreq(self,R):
     from galpy.potential import verticalfreq
     if self._interpverticalfreq:
         indx= (R >= self._rgrid[0])*(R <= self._rgrid[-1])
         out= numpy.empty_like(R)
         if numpy.sum(indx) > 0:
             if self._logR:
                 out[indx]= self._verticalfreqInterp(numpy.log(R[indx]))
             else:
                 out[indx]= self._verticalfreqInterp(R[indx])
         if numpy.sum(True^indx) > 0:
             out[True^indx]= verticalfreq(self._origPot,R[True^indx])
         return out
     else:
         return verticalfreq(self._origPot,R)
예제 #3
0
 def verticalfreq(self,R):
     if self._interpverticalfreq:
         if self._logR:
             return self._verticalfreqInterp(numpy.log(R))
         else:
             return self._verticalfreqInterp(R)
     else:
         from galpy.potential import verticalfreq
         return verticalfreq(self._origPot,R)
예제 #4
0
def test_actionAngleTorus_basic_freqs():
    from galpy.actionAngle import actionAngleTorus
    from galpy.potential import epifreq, omegac, verticalfreq, rl, \
        JaffePotential, PowerSphericalPotential, HernquistPotential
    tol= -3.
    jr= 10.**-6.
    jz= 10.**-6.
    jp= JaffePotential(normalize=1.)
    aAT= actionAngleTorus(pot=jp)
    # at Lz=1
    jphi= 1.
    om= aAT.Freqs(jr,jphi,jz)
    assert numpy.fabs((om[0]-epifreq(jp,rl(jp,jphi)))/om[0]) < 10.**tol, \
        'Close-to-circular orbit does not have Or=kappa for actionAngleTorus'
    assert numpy.fabs((om[1]-omegac(jp,rl(jp,jphi)))/om[1]) < 10.**tol, \
        'Close-to-circular orbit does not have Ophi=omega for actionAngleTorus'
    assert numpy.fabs((om[2]-verticalfreq(jp,rl(jp,jphi)))/om[2]) < 10.**tol, \
        'Close-to-circular orbit does not have Oz=nu for actionAngleTorus'
    # at Lz=1.5, w/ different potential
    pp= PowerSphericalPotential(normalize=1.)
    aAT= actionAngleTorus(pot=pp)
    jphi= 1.5
    om= aAT.Freqs(jr,jphi,jz)
    assert numpy.fabs((om[0]-epifreq(pp,rl(pp,jphi)))/om[0]) < 10.**tol, \
        'Close-to-circular orbit does not have Or=kappa for actionAngleTorus'
    assert numpy.fabs((om[1]-omegac(pp,rl(pp,jphi)))/om[1]) < 10.**tol, \
        'Close-to-circular orbit does not have Ophi=omega for actionAngleTorus'
    assert numpy.fabs((om[2]-verticalfreq(pp,rl(pp,jphi)))/om[2]) < 10.**tol, \
        'Close-to-circular orbit does not have Oz=nu for actionAngleTorus'
    # at Lz=0.5, w/ different potential
    tol= -2.5 # appears more difficult
    hp= HernquistPotential(normalize=1.)
    aAT= actionAngleTorus(pot=hp)
    jphi= 0.5
    om= aAT.Freqs(jr,jphi,jz)
    assert numpy.fabs((om[0]-epifreq(hp,rl(hp,jphi)))/om[0]) < 10.**tol, \
        'Close-to-circular orbit does not have Or=kappa for actionAngleTorus'
    assert numpy.fabs((om[1]-omegac(hp,rl(hp,jphi)))/om[1]) < 10.**tol, \
        'Close-to-circular orbit does not have Ophi=omega for actionAngleTorus'
    assert numpy.fabs((om[2]-verticalfreq(hp,rl(hp,jphi)))/om[2]) < 10.**tol, \
        'Close-to-circular orbit does not have Oz=nu for actionAngleTorus'
    return None
예제 #5
0
def test_actionAngleTorus_basic_freqs():
    from galpy.actionAngle import actionAngleTorus
    from galpy.potential import epifreq, omegac, verticalfreq, rl, \
        JaffePotential, PowerSphericalPotential, HernquistPotential
    tol= -3.
    jr= 10.**-6.
    jz= 10.**-6.
    jp= JaffePotential(normalize=1.)
    aAT= actionAngleTorus(pot=jp)
    # at Lz=1
    jphi= 1.
    om= aAT.Freqs(jr,jphi,jz)
    assert numpy.fabs((om[0]-epifreq(jp,rl(jp,jphi)))/om[0]) < 10.**tol, \
        'Close-to-circular orbit does not have Or=kappa for actionAngleTorus'
    assert numpy.fabs((om[1]-omegac(jp,rl(jp,jphi)))/om[1]) < 10.**tol, \
        'Close-to-circular orbit does not have Ophi=omega for actionAngleTorus'
    assert numpy.fabs((om[2]-verticalfreq(jp,rl(jp,jphi)))/om[2]) < 10.**tol, \
        'Close-to-circular orbit does not have Oz=nu for actionAngleTorus'
    # at Lz=1.5, w/ different potential
    pp= PowerSphericalPotential(normalize=1.)
    aAT= actionAngleTorus(pot=pp)
    jphi= 1.5
    om= aAT.Freqs(jr,jphi,jz)
    assert numpy.fabs((om[0]-epifreq(pp,rl(pp,jphi)))/om[0]) < 10.**tol, \
        'Close-to-circular orbit does not have Or=kappa for actionAngleTorus'
    assert numpy.fabs((om[1]-omegac(pp,rl(pp,jphi)))/om[1]) < 10.**tol, \
        'Close-to-circular orbit does not have Ophi=omega for actionAngleTorus'
    assert numpy.fabs((om[2]-verticalfreq(pp,rl(pp,jphi)))/om[2]) < 10.**tol, \
        'Close-to-circular orbit does not have Oz=nu for actionAngleTorus'
    # at Lz=0.5, w/ different potential
    tol= -2.5 # appears more difficult
    hp= HernquistPotential(normalize=1.)
    aAT= actionAngleTorus(pot=hp)
    jphi= 0.5
    om= aAT.Freqs(jr,jphi,jz)
    assert numpy.fabs((om[0]-epifreq(hp,rl(hp,jphi)))/om[0]) < 10.**tol, \
        'Close-to-circular orbit does not have Or=kappa for actionAngleTorus'
    assert numpy.fabs((om[1]-omegac(hp,rl(hp,jphi)))/om[1]) < 10.**tol, \
        'Close-to-circular orbit does not have Ophi=omega for actionAngleTorus'
    assert numpy.fabs((om[2]-verticalfreq(hp,rl(hp,jphi)))/om[2]) < 10.**tol, \
        'Close-to-circular orbit does not have Oz=nu for actionAngleTorus'
    return None
예제 #6
0
def test_call_diffinoutputs():
    qdf= quasiisothermaldf(1./4.,0.2,0.1,1.,1.,
                           pot=MWPotential,aA=aAS,cutcounter=True)
    #when specifying rg etc., first get these from a previous output
    val, trg, tkappa, tnu, tOmega= qdf((0.03,0.9,0.02),_return_freqs=True)
    #First check that just supplying these again works
    assert numpy.fabs(val-qdf((0.03,0.9,0.02),rg=trg,kappa=tkappa,nu=tnu,
                              Omega=tOmega)) < 10.**-8., 'qdf calls w/ rg, and frequencies specified and w/ not specified do not agrees'
    #Also calculate the frequencies
    assert numpy.fabs(val-qdf((0.03,0.9,0.02),rg=trg,
                              kappa=epifreq(MWPotential,trg),
                              nu=verticalfreq(MWPotential,trg),
                              Omega=omegac(MWPotential,trg))) < 10.**-8., 'qdf calls w/ rg, and frequencies specified and w/ not specified do not agrees'
    #Also test _return_actions
    val, jr,lz,jz= qdf(0.9,0.1,0.95,0.1,0.08,_return_actions=True)
    assert numpy.fabs(val-qdf((jr,lz,jz))) < 10.**-8., 'qdf call w/ R,vR,... and actions specified do not agree'
    acs= aAS(0.9,0.1,0.95,0.1,0.08)
    assert numpy.fabs(acs[0]-jr) < 10.**-8., 'direct calculation of jr and that returned from qdf.__call__ does not agree'
    assert numpy.fabs(acs[1]-lz) < 10.**-8., 'direct calculation of lz and that returned from qdf.__call__ does not agree'
    assert numpy.fabs(acs[2]-jz) < 10.**-8., 'direct calculation of jz and that returned from qdf.__call__ does not agree'
    #Test unbound orbits
    #Find unbound orbit, new qdf s.t. we can get UnboundError (only with 
    taAS= actionAngleStaeckel(pot=MWPotential,c=False,delta=0.5)
    qdfnc= quasiisothermaldf(1./4.,0.2,0.1,1.,1.,
                             pot=MWPotential,
                             aA=taAS,
                             cutcounter=True)
    from galpy.actionAngle import UnboundError
    try: acs= taAS(0.9,10.,-20.,0.1,10.)
    except UnboundError: pass
    else: 
        print(acs)
        raise AssertionError('Test orbit in qdf that is supposed to be unbound is not')
    assert qdfnc(0.9,10.,-20.,0.1,10.) < 10.**-10., 'unbound orbit does not return qdf equal to zero'
    #Test negative lz
    assert qdf((0.03,-0.1,0.02)) < 10.**-8., 'qdf w/ cutcounter=True and negative lz does not return 0'
    assert qdf((0.03,-0.1,0.02),log=True) <= numpy.finfo(numpy.dtype(numpy.float64)).min+1., 'qdf w/ cutcounter=True and negative lz does not return 0'
    #Test func
    val= qdf((0.03,0.9,0.02))
    fval= qdf((0.03,0.9,0.02),func=lambda x,y,z: numpy.sin(x)*numpy.cos(y)\
                  *numpy.exp(z))
    assert numpy.fabs(val*numpy.sin(0.03)*numpy.cos(0.9)*numpy.exp(0.02)-
                      fval) < 10.**-8, 'qdf __call__ w/ func does not work as expected'  
    lfval= qdf((0.03,0.9,0.02),func=lambda x,y,z: numpy.sin(x)*numpy.cos(y)\
                   *numpy.exp(z),log=True)
    assert numpy.fabs(numpy.log(val)+numpy.log(numpy.sin(0.03)\
                                                   *numpy.cos(0.9)\
                                                   *numpy.exp(0.02))-
                      lfval) < 10.**-8, 'qdf __call__ w/ func does not work as expected'
    return None
예제 #7
0
 def _calc_verticalfreq(self, r):
     """
     NAME:
        _calc_verticalfreq
     PURPOSE:
        calculate the vertical frequency at r
     INPUT:
        r - radius
     OUTPUT:
        nu
     HISTORY:
        2012-07-25 - Written - Bovy (IAS@MPIA)
     NOTE:
        takes about 0.05 ms for a Miyamoto-Nagai potential
     """
     return potential.verticalfreq(self._pot, r)
def scale_height(R, R0, tau):
    """
    Scale height in function of the mean vertical action
    and the vertical frequency as a function of birth radius,
    current radius and time. For isothermal sech2 distribution

    Arguments:
        R = present day Galctocentric radius [kpc]
        R0 = birth Galactocentric radius [kpc]
        t = stellar age [Gyr]

    Returns
        hz = the scale-height [kpc]

    2019-01-19 frankel
    """
    jz = vertical_action((R + R0) / 2., tau)
    nu = verticalfreq(pot, R / _REFR0) * _REFV0 / _REFR0
    hz = np.sqrt(2 * jz / nu)
    return hz
예제 #9
0
 def _actionsFreqsAngles(self,*args,**kwargs):
     """
     NAME:
        _actionsFreqsAngles
     PURPOSE:
        evaluate the actions, frequencies, and angles 
        (jr,lz,jz,Omegar,Omegaphi,Omegaz,angler,anglephi,anglez)
     INPUT:
        Either:
           a) R,vR,vT,z,vz,phi (MUST HAVE PHI)
           b) Orbit instance: initial condition used if that's it, orbit(t)
              if there is a time given as well
        scipy.integrate.quadrature keywords
     OUTPUT:
         (jr,lz,jz,Omegar,Omegaphi,Omegaz,angler,anglephi,anglez)
     HISTORY:
        2013-08-28 - Written - Bovy (IAS)
     """
     if ((self._c and not ('c' in kwargs and not kwargs['c']))\
             or (ext_loaded and (('c' in kwargs and kwargs['c'])))) \
             and _check_c(self._pot):
         if len(args) == 5: #R,vR.vT, z, vz pragma: no cover
             raise IOError("Must specify phi")
         elif len(args) == 6: #R,vR.vT, z, vz, phi
             R,vR,vT, z, vz, phi= args
         else:
             self._parse_eval_args(*args)
             R= self._eval_R
             vR= self._eval_vR
             vT= self._eval_vT
             z= self._eval_z
             vz= self._eval_vz
             phi= self._eval_phi
         if isinstance(R,float):
             R= nu.array([R])
             vR= nu.array([vR])
             vT= nu.array([vT])
             z= nu.array([z])
             vz= nu.array([vz])
             phi= nu.array([phi])
         Lz= R*vT
         if self._useu0:
             #First calculate u0
             if 'u0' in kwargs:
                 u0= nu.asarray(kwargs['u0'])
             else:
                 E= nu.array([_evaluatePotentials(self._pot,R[ii],z[ii])
                              +vR[ii]**2./2.+vz[ii]**2./2.+vT[ii]**2./2. for ii in range(len(R))])
                 u0= actionAngleStaeckel_c.actionAngleStaeckel_calcu0(E,Lz,
                                                                      self._pot,
                                                                      self._delta)[0]
             kwargs.pop('u0',None)
         else:
             u0= None
         jr, jz, Omegar, Omegaphi, Omegaz, angler, anglephi,anglez, err= actionAngleStaeckel_c.actionAngleFreqAngleStaeckel_c(\
             self._pot,self._delta,R,vR,vT,z,vz,phi,u0=u0)
         # Adjustements for close-to-circular orbits
         indx= nu.isnan(Omegar)*(jr < 10.**-3.)+nu.isnan(Omegaz)*(jz < 10.**-3.) #Close-to-circular and close-to-the-plane orbits
         if nu.sum(indx) > 0:
             Omegar[indx]= [epifreq(self._pot,r,use_physical=False) for r in R[indx]]
             Omegaphi[indx]= [omegac(self._pot,r,use_physical=False) for r in R[indx]]
             Omegaz[indx]= [verticalfreq(self._pot,r,use_physical=False) for r in R[indx]]
         if err == 0:
             return (jr,Lz,jz,Omegar,Omegaphi,Omegaz,angler,anglephi,anglez)
         else:
             raise RuntimeError("C-code for calculation actions failed; try with c=False") #pragma: no cover
     else: #pragma: no cover
         if 'c' in kwargs and kwargs['c'] and not self._c: #pragma: no cover
             warnings.warn("C module not used because potential does not have a C implementation",galpyWarning)
         raise NotImplementedError("actionsFreqs with c=False not implemented")
예제 #10
0
 def _actionsFreqsAngles(self, *args, **kwargs):
     """
     NAME:
        actionsFreqsAngles (_actionsFreqsAngles)
     PURPOSE:
        evaluate the actions, frequencies, and angles (jr,lz,jz,Omegar,Omegaphi,Omegaz,angler,anglephi,anglez)
     INPUT:
        Either:
           a) R,vR,vT,z,vz[,phi]:
              1) floats: phase-space value for single object (phi is optional) (each can be a Quantity)
              2) numpy.ndarray: [N] phase-space values for N objects (each can be a Quantity)
           b) Orbit instance: initial condition used if that's it, orbit(t) if there is a time given as well as the second argument 
        delta= (object-wide default) can be used to override the object-wide focal length; can also be an array with length N to allow different delta for different phase-space points
        u0= (None) if object-wide option useu0 is set, u0 to use (if useu0 and useu0 is None, a good value will be computed)
        c= (object-wide default, bool) True/False to override the object-wide setting for whether or not to use the C implementation
        order= (10) number of points to use in the Gauss-Legendre numerical integration of the relevant action, frequency, and angle integrals
        When not using C:
           fixed_quad= (False) if True, use Gaussian quadrature (scipy.integrate.fixed_quad instead of scipy.integrate.quad)
           scipy.integrate.fixed_quad or .quad keywords
     OUTPUT:
         (jr,lz,jz,Omegar,Omegaphi,Omegaz,angler,anglephi,anglez)
     HISTORY:
        2013-08-28 - Written - Bovy (IAS)
     """
     delta = kwargs.pop('delta', self._delta)
     order = kwargs.get('order', self._order)
     if ((self._c and not ('c' in kwargs and not kwargs['c']))\
             or (ext_loaded and (('c' in kwargs and kwargs['c'])))) \
             and _check_c(self._pot):
         if len(args) == 5:  #R,vR.vT, z, vz pragma: no cover
             raise IOError("Must specify phi")
         elif len(args) == 6:  #R,vR.vT, z, vz, phi
             R, vR, vT, z, vz, phi = args
         else:
             self._parse_eval_args(*args)
             R = self._eval_R
             vR = self._eval_vR
             vT = self._eval_vT
             z = self._eval_z
             vz = self._eval_vz
             phi = self._eval_phi
         if isinstance(R, float):
             R = nu.array([R])
             vR = nu.array([vR])
             vT = nu.array([vT])
             z = nu.array([z])
             vz = nu.array([vz])
             phi = nu.array([phi])
         Lz = R * vT
         if self._useu0:
             #First calculate u0
             if 'u0' in kwargs:
                 u0 = nu.asarray(kwargs['u0'])
             else:
                 E = nu.array([
                     _evaluatePotentials(self._pot, R[ii], z[ii]) +
                     vR[ii]**2. / 2. + vz[ii]**2. / 2. + vT[ii]**2. / 2.
                     for ii in range(len(R))
                 ])
                 u0= actionAngleStaeckel_c.actionAngleStaeckel_calcu0(\
                     E,Lz,self._pot,delta)[0]
             kwargs.pop('u0', None)
         else:
             u0 = None
         jr, jz, Omegar, Omegaphi, Omegaz, angler, anglephi,anglez, err= actionAngleStaeckel_c.actionAngleFreqAngleStaeckel_c(\
             self._pot,delta,R,vR,vT,z,vz,phi,u0=u0,order=order)
         # Adjustements for close-to-circular orbits
         indx = nu.isnan(Omegar) * (jr < 10.**-3.) + nu.isnan(Omegaz) * (
             jz < 10.**-3.
         )  #Close-to-circular and close-to-the-plane orbits
         if nu.sum(indx) > 0:
             Omegar[indx] = [
                 epifreq(self._pot, r, use_physical=False) for r in R[indx]
             ]
             Omegaphi[indx] = [
                 omegac(self._pot, r, use_physical=False) for r in R[indx]
             ]
             Omegaz[indx] = [
                 verticalfreq(self._pot, r, use_physical=False)
                 for r in R[indx]
             ]
         if err == 0:
             return (jr, Lz, jz, Omegar, Omegaphi, Omegaz, angler, anglephi,
                     anglez)
         else:
             raise RuntimeError(
                 "C-code for calculation actions failed; try with c=False"
             )  #pragma: no cover
     else:  #pragma: no cover
         if 'c' in kwargs and kwargs['c'] and not self._c:  #pragma: no cover
             warnings.warn(
                 "C module not used because potential does not have a C implementation",
                 galpyWarning)
         raise NotImplementedError(
             "actionsFreqs with c=False not implemented")
예제 #11
0
    def __init__(self,
                 RZPot=None,rgrid=(numpy.log(0.01),numpy.log(20.),101),
                 zgrid=(0.,1.,101),logR=True,
                 interpPot=False,interpRforce=False,interpzforce=False,
                 interpDens=False,
                 interpvcirc=False,
                 interpdvcircdr=False,
                 interpepifreq=False,interpverticalfreq=False,
                 ro=None,vo=None,
                 use_c=False,enable_c=False,zsym=True,
                 numcores=None):
        """
        NAME:

           __init__

        PURPOSE:

           Initialize an interpRZPotential instance

        INPUT:

           RZPot - RZPotential to be interpolated

           rgrid - R grid to be given to linspace as in rs= linspace(*rgrid)

           zgrid - z grid to be given to linspace as in zs= linspace(*zgrid)

           logR - if True, rgrid is in the log of R so logrs= linspace(*rgrid)

           interpPot, interpRforce, interpzforce, interpDens,interpvcirc, interpepifreq, interpverticalfreq, interpdvcircdr= if True, interpolate these functions

           use_c= use C to speed up the calculation of the grid

           enable_c= enable use of C for interpolations

           zsym= if True (default), the potential is assumed to be symmetric around z=0 (so you can use, e.g.,  zgrid=(0.,1.,101)).

           numcores= if set to an integer, use this many cores (only used for vcirc, dvcircdR, epifreq, and verticalfreq; NOT NECESSARILY FASTER, TIME TO MAKE SURE)

           ro=, vo= distance and velocity scales for translation into internal units (default from configuration file)

        OUTPUT:

           instance

        HISTORY:

           2010-07-21 - Written - Bovy (NYU)

           2013-01-24 - Started with new implementation - Bovy (IAS)

        """
        if isinstance(RZPot,interpRZPotential):
            from galpy.potential import PotentialError
            raise PotentialError('Cannot setup interpRZPotential with another interpRZPotential')
        # Propagate ro and vo
        roSet= True
        voSet= True
        if ro is None:
            if isinstance(RZPot,list):
                ro= RZPot[0]._ro
                roSet= RZPot[0]._roSet
            else:
                ro= RZPot._ro
                roSet= RZPot._roSet
        if vo is None:
            if isinstance(RZPot,list):
                vo= RZPot[0]._vo
                voSet= RZPot[0]._voSet
            else:
                vo= RZPot._vo
                voSet= RZPot._voSet
        Potential.__init__(self,amp=1.,ro=ro,vo=vo)
        # Turn off physical if it hadn't been on
        if not roSet: self._roSet= False
        if not voSet: self._voSet= False
        self._origPot= RZPot
        self._rgrid= numpy.linspace(*rgrid)
        self._logR= logR
        if self._logR:
            self._rgrid= numpy.exp(self._rgrid)
            self._logrgrid= numpy.log(self._rgrid)
        self._zgrid= numpy.linspace(*zgrid)
        self._interpPot= interpPot
        self._interpRforce= interpRforce
        self._interpzforce= interpzforce
        self._interpDens= interpDens
        self._interpvcirc= interpvcirc
        self._interpdvcircdr= interpdvcircdr
        self._interpepifreq= interpepifreq
        self._interpverticalfreq= interpverticalfreq
        self._enable_c= enable_c*ext_loaded
        self.hasC= self._enable_c
        self._zsym= zsym
        if interpPot:
            if use_c*ext_loaded:
                self._potGrid, err= calc_potential_c(self._origPot,self._rgrid,self._zgrid)
            else:
                from galpy.potential import evaluatePotentials
                potGrid= numpy.zeros((len(self._rgrid),len(self._zgrid)))
                for ii in range(len(self._rgrid)):
                    for jj in range(len(self._zgrid)):
                        potGrid[ii,jj]= evaluatePotentials(self._origPot,self._rgrid[ii],self._zgrid[jj])
                self._potGrid= potGrid
            if self._logR:
                self._potInterp= interpolate.RectBivariateSpline(self._logrgrid,
                                                                 self._zgrid,
                                                                 self._potGrid,
                                                                 kx=3,ky=3,s=0.)
            else:
                self._potInterp= interpolate.RectBivariateSpline(self._rgrid,
                                                                 self._zgrid,
                                                                 self._potGrid,
                                                                 kx=3,ky=3,s=0.)
            if enable_c*ext_loaded:
                self._potGrid_splinecoeffs= calc_2dsplinecoeffs_c(self._potGrid)
        if interpRforce:
            if use_c*ext_loaded:
                self._rforceGrid, err= calc_potential_c(self._origPot,self._rgrid,self._zgrid,rforce=True)
            else:
                from galpy.potential import evaluateRforces
                rforceGrid= numpy.zeros((len(self._rgrid),len(self._zgrid)))
                for ii in range(len(self._rgrid)):
                    for jj in range(len(self._zgrid)):
                        rforceGrid[ii,jj]= evaluateRforces(self._origPot,self._rgrid[ii],self._zgrid[jj])
                self._rforceGrid= rforceGrid
            if self._logR:
                self._rforceInterp= interpolate.RectBivariateSpline(self._logrgrid,
                                                                    self._zgrid,
                                                                    self._rforceGrid,
                                                                    kx=3,ky=3,s=0.)
            else:
                self._rforceInterp= interpolate.RectBivariateSpline(self._rgrid,
                                                                    self._zgrid,
                                                                    self._rforceGrid,
                                                                    kx=3,ky=3,s=0.)
            if enable_c*ext_loaded:
                self._rforceGrid_splinecoeffs= calc_2dsplinecoeffs_c(self._rforceGrid)
        if interpzforce:
            if use_c*ext_loaded:
                self._zforceGrid, err= calc_potential_c(self._origPot,self._rgrid,self._zgrid,zforce=True)
            else:
                from galpy.potential import evaluatezforces
                zforceGrid= numpy.zeros((len(self._rgrid),len(self._zgrid)))
                for ii in range(len(self._rgrid)):
                    for jj in range(len(self._zgrid)):
                        zforceGrid[ii,jj]= evaluatezforces(self._origPot,self._rgrid[ii],self._zgrid[jj])
                self._zforceGrid= zforceGrid
            if self._logR:
                self._zforceInterp= interpolate.RectBivariateSpline(self._logrgrid,
                                                                    self._zgrid,
                                                                    self._zforceGrid,
                                                                    kx=3,ky=3,s=0.)
            else:
                self._zforceInterp= interpolate.RectBivariateSpline(self._rgrid,
                                                                    self._zgrid,
                                                                    self._zforceGrid,
                                                                    kx=3,ky=3,s=0.)
            if enable_c*ext_loaded:
                self._zforceGrid_splinecoeffs= calc_2dsplinecoeffs_c(self._zforceGrid)
        if interpDens:
            from galpy.potential import evaluateDensities
            densGrid= numpy.zeros((len(self._rgrid),len(self._zgrid)))
            for ii in range(len(self._rgrid)):
                for jj in range(len(self._zgrid)):
                    densGrid[ii,jj]= evaluateDensities(self._origPot,self._rgrid[ii],self._zgrid[jj])
            self._densGrid= densGrid
            if self._logR:
                self._densInterp= interpolate.RectBivariateSpline(self._logrgrid,
                                                                  self._zgrid,
                                                                  numpy.log(self._densGrid+10.**-10.),
                                                                  kx=3,ky=3,s=0.)
            else:
                self._densInterp= interpolate.RectBivariateSpline(self._rgrid,
                                                                  self._zgrid,
                                                                  numpy.log(self._densGrid+10.**-10.),
                                                                  kx=3,ky=3,s=0.)
        if interpvcirc:
            from galpy.potential import vcirc
            if not numcores is None:
                self._vcircGrid= multi.parallel_map((lambda x: vcirc(self._origPot,self._rgrid[x])),
                                                    list(range(len(self._rgrid))),numcores=numcores)
            else:
                self._vcircGrid= numpy.array([vcirc(self._origPot,r) for r in self._rgrid])
            if self._logR:
                self._vcircInterp= interpolate.InterpolatedUnivariateSpline(self._logrgrid,self._vcircGrid,k=3)
            else:
                self._vcircInterp= interpolate.InterpolatedUnivariateSpline(self._rgrid,self._vcircGrid,k=3)
        if interpdvcircdr:
            from galpy.potential import dvcircdR
            if not numcores is None:
                self._dvcircdrGrid= multi.parallel_map((lambda x: dvcircdR(self._origPot,self._rgrid[x])),
                                                       list(range(len(self._rgrid))),numcores=numcores)
            else:
                self._dvcircdrGrid= numpy.array([dvcircdR(self._origPot,r) for r in self._rgrid])
            if self._logR:
                self._dvcircdrInterp= interpolate.InterpolatedUnivariateSpline(self._logrgrid,self._dvcircdrGrid,k=3)
            else:
                self._dvcircdrInterp= interpolate.InterpolatedUnivariateSpline(self._rgrid,self._dvcircdrGrid,k=3)
        if interpepifreq:
            from galpy.potential import epifreq
            if not numcores is None:
                self._epifreqGrid= numpy.array(multi.parallel_map((lambda x: epifreq(self._origPot,self._rgrid[x])),
                                                      list(range(len(self._rgrid))),numcores=numcores))
            else:
                self._epifreqGrid= numpy.array([epifreq(self._origPot,r) for r in self._rgrid])
            indx= True^numpy.isnan(self._epifreqGrid)
            if numpy.sum(indx) < 4:
                if self._logR:
                    self._epifreqInterp= interpolate.InterpolatedUnivariateSpline(self._logrgrid[indx],self._epifreqGrid[indx],k=1)
                else:
                    self._epifreqInterp= interpolate.InterpolatedUnivariateSpline(self._rgrid[indx],self._epifreqGrid[indx],k=1)
            else:
                if self._logR:
                    self._epifreqInterp= interpolate.InterpolatedUnivariateSpline(self._logrgrid[indx],self._epifreqGrid[indx],k=3)
                else:
                    self._epifreqInterp= interpolate.InterpolatedUnivariateSpline(self._rgrid[indx],self._epifreqGrid[indx],k=3)
        if interpverticalfreq:
            from galpy.potential import verticalfreq
            if not numcores is None:
                self._verticalfreqGrid= multi.parallel_map((lambda x: verticalfreq(self._origPot,self._rgrid[x])),
                                                       list(range(len(self._rgrid))),numcores=numcores)
            else:
                self._verticalfreqGrid= numpy.array([verticalfreq(self._origPot,r) for r in self._rgrid])
            if self._logR:
                self._verticalfreqInterp= interpolate.InterpolatedUnivariateSpline(self._logrgrid,self._verticalfreqGrid,k=3)
            else:
                self._verticalfreqInterp= interpolate.InterpolatedUnivariateSpline(self._rgrid,self._verticalfreqGrid,k=3)
        return None
예제 #12
0
    def change_Iso(self,df_stats,integ=False,tdep=False):

        rho0= df_stats[0]
        sig= df_stats[1]

        df= IsoDF(rho0,sig)

        try:
            freq= verticalfreq(self.pot,1.)
        except:
            freq= self.VertFreq()
        f0= df.calc_df(self.Jz[:,:,None]+self.deltaJ,freq)

        if integ:
            rho= simps(f0,self.v,axis=1)
            meanV= simps(f0*self.v[None,:],axis=1)/simps(f0,axis=1)
        else:
            rho= np.sum(f0,axis=1)*(self.v[1]-self.v[0])
            meanV= np.sum(np.atleast_2d(self.v[None,:,None])*f0,axis=1)/f0.sum(axis=1)

        rawA= (rho-rho[::-1])/(rho+rho[::-1])

        if tdep:
            try:
                if self.z0==None:
                    nt= int(len(self.t))
                    zAA= np.tile(self.z,(nt,1))
                    zA= zAA[zAA>=0.]
                    A= rawA[zAA>=0.]
            except:
                if (zsun=='fit') or (zsun=='mean'):
                    nt= len(self.t)
                    A= np.zeros([nt,self.znpt*2])
                    zf= np.zeros([nt,self.znpt*2])

                    for i,z0 in enumerate(self.z0):
                        zs= 2.*z0-self.z
                        zf[i]= np.sort(np.append(self.z,zs))

                        funcp= interp1d(self.z,np.log(rho[:,i]), fill_value='extrapolate',kind='cubic')
                        p= np.exp(funcp(zf[i]))
                        A[i]= (p-p[::-1])/(p+p[::-1])

                    A= A
                    zA= zf-self.z0[:,None]
                    zA= zA[zA>=0]
                else:
                    print('Please choose fit, mean, or None as a method of finding zsun.')

        else:

            if self.z0==None:
                zAA= self.z
                zA= zAA[zAA>=0.]
                A= self.rawA[:,-1][zAA>=0]

            if self.z0.dtype=='float64':
                zs= 2.*self.z0-self.z
                zf= np.sort(np.append(self.z,zs))

                funcp= interp1d(self.z,np.log(rho[:,0]), fill_value='extrapolate',kind='cubic')
                p= np.exp(funcp(zf))
                A= (p-p[::-1])/(p+p[::-1])

                zAA= zf-self.z0
                zA= zAA[zAA>=0.]
                A= A[zAA>=0.]

        return f0, rho, meanV, zA, A
예제 #13
0
    def calc_pert(self,dJ,t,df_stats,integ=False,rotFreq=1.,zsun='mean',
                  tdep=False,method='slow'):

        self.rho0= df_stats[0]
        self.sig= df_stats[1]

        self.df= IsoDF(self.rho0,self.sig)
        try:
            freq= verticalfreq(self.pot,1.)
        except:
            freq= self.VertFreq()
        self.f0= self.df.calc_df(self.Jz+self.deltaJ,freq)
        
        if integ:
            self.rho= simps(self.f0,self.v,axis=1)[:,None]
            self.meanV= simps(self.f0*self.v[None,:],axis=1)/simps(self.f0,axis=1)
        else:
            self.rho= np.sum(self.f0,axis=1)*(self.v[1]-self.v[0])
            self.meanV= np.sum(np.atleast_2d(self.v[None,:,None])*self.f0,axis=1)/self.f0.sum(axis=1)

        if zsun=='mean':
            #self.z0= -simps(self.rho.T*self.z,self.z)
            f= interp1d(np.cumsum(np.reshape(self.rho,self.znpt))/np.sum(self.rho),self.z)
            self.z0= f(0.5)
        elif zsun=='fit':

            if tdep:
                self.fit= np.array([self.calc_sechfit([self.rho[:,i],self.z],[np.log(np.max(self.rho[:,i])),0.,0.02]) for i in range(len(self.t))])
                self.z0= -self.fit[:,1]
            else:
                self.fit= self.calc_sechfit([self.rho[:,0],self.z],[np.log(np.max(self.rho[:,0])),0.,0.02])
                self.z0= -self.fit[1]

        elif zsun==None:
            self.z0=None
        else:
            print("""No method for finding zsun was specified, so it was assumed to be zero.\
            Please specify either 'mean' or 'fit' to adjust for movement of the disc""")
            self.z0=0.

        self.rawA= (self.rho-self.rho[::-1])/(self.rho+self.rho[::-1])

        #Calculate the asymmetry
        if tdep:
            try:
                if self.z0==None:
                    nt= int(len(self.t))
                    zA= np.tile(self.z,(nt,1)).T
                    self.zA= zA[int(self.znpt/2):]
                    self.A= self.rawA[int(self.znpt/2):]
            except:
                if self.z0.dtype=='float64':
                    nt= len(self.t)

                    self.A= np.zeros([nt,self.znpt])
                    zf= np.zeros([nt,self.znpt])
                    self.zA= np.zeros([nt,self.znpt])

                    for i,z0 in enumerate(self.z0):
                        zs= 2.*z0-self.z
                        zf= np.sort(np.append(self.z,zs))

                        funcp= interp1d(self.z,np.log(self.rho[:,i]), fill_value='extrapolate',kind='cubic')
                        p= np.exp(funcp(zf))
                        A= (p-p[::-1])/(p+p[::-1])

                        zA= zf-z0
                        self.zA[i]= zA[zA>=0.]
                        self.A[i]= A[zA>=0.]

                else:
                    print('Please choose fit, mean, or None as a method of finding zsun.')

        else:

            if self.z0==None:
                zA= self.z
                self.zA= zA[zA>=0.]
                self.A= self.rawA[:,-1][zA>=0]

            elif self.z0.dtype=='float64':
                zs= 2.*self.z0-self.z
                zf= np.sort(np.append(self.z,zs))

                funcp= interp1d(self.z,np.log(self.rho[:,0]), fill_value='extrapolate',kind='cubic')
                p= np.exp(funcp(zf))
                A= (p-p[::-1])/(p+p[::-1])

                zA= zf-self.z0
                self.zA= zA[zA>=0.]
                self.A= A[zA>=0.]
        return None
예제 #14
0
 def _actionsFreqsAngles(self,*args,**kwargs):
     """
     NAME:
        actionsFreqsAngles (_actionsFreqsAngles)
     PURPOSE:
        evaluate the actions, frequencies, and angles (jr,lz,jz,Omegar,Omegaphi,Omegaz,angler,anglephi,anglez)
     INPUT:
        Either:
           a) R,vR,vT,z,vz[,phi]:
              1) floats: phase-space value for single object (phi is optional) (each can be a Quantity)
              2) numpy.ndarray: [N] phase-space values for N objects (each can be a Quantity)
           b) Orbit instance: initial condition used if that's it, orbit(t) if there is a time given as well as the second argument 
        delta= (object-wide default) can be used to override the object-wide focal length; can also be an array with length N to allow different delta for different phase-space points
        u0= (None) if object-wide option useu0 is set, u0 to use (if useu0 and useu0 is None, a good value will be computed)
        c= (object-wide default, bool) True/False to override the object-wide setting for whether or not to use the C implementation
        order= (10) number of points to use in the Gauss-Legendre numerical integration of the relevant action, frequency, and angle integrals
        When not using C:
           fixed_quad= (False) if True, use Gaussian quadrature (scipy.integrate.fixed_quad instead of scipy.integrate.quad)
           scipy.integrate.fixed_quad or .quad keywords
     OUTPUT:
         (jr,lz,jz,Omegar,Omegaphi,Omegaz,angler,anglephi,anglez)
     HISTORY:
        2013-08-28 - Written - Bovy (IAS)
     """
     delta= kwargs.pop('delta',self._delta)
     order= kwargs.get('order',self._order)
     if ((self._c and not ('c' in kwargs and not kwargs['c']))\
             or (ext_loaded and (('c' in kwargs and kwargs['c'])))) \
             and _check_c(self._pot):
         if len(args) == 5: #R,vR.vT, z, vz pragma: no cover
             raise IOError("Must specify phi")
         elif len(args) == 6: #R,vR.vT, z, vz, phi
             R,vR,vT, z, vz, phi= args
         else:
             self._parse_eval_args(*args)
             R= self._eval_R
             vR= self._eval_vR
             vT= self._eval_vT
             z= self._eval_z
             vz= self._eval_vz
             phi= self._eval_phi
         if isinstance(R,float):
             R= nu.array([R])
             vR= nu.array([vR])
             vT= nu.array([vT])
             z= nu.array([z])
             vz= nu.array([vz])
             phi= nu.array([phi])
         Lz= R*vT
         if self._useu0:
             #First calculate u0
             if 'u0' in kwargs:
                 u0= nu.asarray(kwargs['u0'])
             else:
                 E= nu.array([_evaluatePotentials(self._pot,R[ii],z[ii])
                              +vR[ii]**2./2.+vz[ii]**2./2.+vT[ii]**2./2. for ii in range(len(R))])
                 u0= actionAngleStaeckel_c.actionAngleStaeckel_calcu0(\
                     E,Lz,self._pot,delta)[0]
             kwargs.pop('u0',None)
         else:
             u0= None
         jr, jz, Omegar, Omegaphi, Omegaz, angler, anglephi,anglez, err= actionAngleStaeckel_c.actionAngleFreqAngleStaeckel_c(\
             self._pot,delta,R,vR,vT,z,vz,phi,u0=u0,order=order)
         # Adjustements for close-to-circular orbits
         indx= nu.isnan(Omegar)*(jr < 10.**-3.)+nu.isnan(Omegaz)*(jz < 10.**-3.) #Close-to-circular and close-to-the-plane orbits
         if nu.sum(indx) > 0:
             Omegar[indx]= [epifreq(self._pot,r,use_physical=False) for r in R[indx]]
             Omegaphi[indx]= [omegac(self._pot,r,use_physical=False) for r in R[indx]]
             Omegaz[indx]= [verticalfreq(self._pot,r,use_physical=False) for r in R[indx]]
         if err == 0:
             return (jr,Lz,jz,Omegar,Omegaphi,Omegaz,angler,anglephi,anglez)
         else:
             raise RuntimeError("C-code for calculation actions failed; try with c=False") #pragma: no cover
     else: #pragma: no cover
         if 'c' in kwargs and kwargs['c'] and not self._c: #pragma: no cover
             warnings.warn("C module not used because potential does not have a C implementation",galpyWarning)
         raise NotImplementedError("actionsFreqs with c=False not implemented")
예제 #15
0
 def __init__(self,
              RZPot=None,rgrid=(0.01,2.,101),zgrid=(0.,0.2,101),logR=False,
              interpPot=False,interpRforce=False,interpzforce=False,
              interpDens=False,
              interpvcirc=False,
              interpdvcircdr=False,
              interpepifreq=False,interpverticalfreq=False,
              use_c=False,enable_c=False,zsym=True,
              numcores=None):
     """
     NAME:
        __init__
     PURPOSE:
        Initialize an interpRZPotential instance
     INPUT:
        RZPot - RZPotential to be interpolated
        rgrid - R grid to be given to linspace
        zgrid - z grid to be given to linspace
        logR - if True, rgrid is in the log of R
        interpPot, interpRfoce, interpzforce, interpDens,interpvcirc, interpeopifreq, interpverticalfreq, interpdvcircdr= if True, interpolate these functions
        use_c= use C to speed up the calculation
        enable_c= enable use of C for interpolations
        zsym= if True (default), the potential is assumed to be symmetric around z=0 (so you can use, e.g.,  zgrid=(0.,1.,101)).
        numcores= if set to an integer, use this many cores (only used for vcirc, dvcircdR, epifreq, and verticalfreq; NOT NECESSARILY FASTER, TIME TO MAKE SURE)
     OUTPUT:
        instance
     HISTORY:
        2010-07-21 - Written - Bovy (NYU)
        2013-01-24 - Started with new implementation - Bovy (IAS)
     """
     Potential.__init__(self,amp=1.)
     self.hasC= True
     self._origPot= RZPot
     self._rgrid= numpy.linspace(*rgrid)
     self._logR= logR
     if self._logR:
         self._rgrid= numpy.exp(self._rgrid)
         self._logrgrid= numpy.log(self._rgrid)
     self._zgrid= numpy.linspace(*zgrid)
     self._interpPot= interpPot
     self._interpRforce= interpRforce
     self._interpzforce= interpzforce
     self._interpDens= interpDens
     self._interpvcirc= interpvcirc
     self._interpdvcircdr= interpdvcircdr
     self._interpepifreq= interpepifreq
     self._interpverticalfreq= interpverticalfreq
     self._enable_c= enable_c*ext_loaded
     self._zsym= zsym
     if interpPot:
         if use_c*ext_loaded:
             self._potGrid, err= calc_potential_c(self._origPot,self._rgrid,self._zgrid)
         else:
             from galpy.potential import evaluatePotentials
             potGrid= numpy.zeros((len(self._rgrid),len(self._zgrid)))
             for ii in range(len(self._rgrid)):
                 for jj in range(len(self._zgrid)):
                     potGrid[ii,jj]= evaluatePotentials(self._rgrid[ii],self._zgrid[jj],self._origPot)
             self._potGrid= potGrid
         if self._logR:
             self._potInterp= interpolate.RectBivariateSpline(self._logrgrid,
                                                              self._zgrid,
                                                              self._potGrid,
                                                              kx=3,ky=3,s=0.)
         else:
             self._potInterp= interpolate.RectBivariateSpline(self._rgrid,
                                                              self._zgrid,
                                                              self._potGrid,
                                                              kx=3,ky=3,s=0.)
         if enable_c*ext_loaded:
             self._potGrid_splinecoeffs= calc_2dsplinecoeffs_c(self._potGrid)
     if interpRforce:
         if use_c*ext_loaded:
             self._rforceGrid, err= calc_potential_c(self._origPot,self._rgrid,self._zgrid,rforce=True)
         else:
             from galpy.potential import evaluateRforces
             rforceGrid= numpy.zeros((len(self._rgrid),len(self._zgrid)))
             for ii in range(len(self._rgrid)):
                 for jj in range(len(self._zgrid)):
                     rforceGrid[ii,jj]= evaluateRforces(self._rgrid[ii],self._zgrid[jj],self._origPot)
             self._rforceGrid= rforceGrid
         if self._logR:
             self._rforceInterp= interpolate.RectBivariateSpline(self._logrgrid,
                                                                 self._zgrid,
                                                                 self._rforceGrid,
                                                                 kx=3,ky=3,s=0.)
         else:
             self._rforceInterp= interpolate.RectBivariateSpline(self._rgrid,
                                                                 self._zgrid,
                                                                 self._rforceGrid,
                                                                 kx=3,ky=3,s=0.)
         if enable_c*ext_loaded:
             self._rforceGrid_splinecoeffs= calc_2dsplinecoeffs_c(self._rforceGrid)
     if interpzforce:
         if use_c*ext_loaded:
             self._zforceGrid, err= calc_potential_c(self._origPot,self._rgrid,self._zgrid,zforce=True)
         else:
             from galpy.potential import evaluatezforces
             zforceGrid= numpy.zeros((len(self._rgrid),len(self._zgrid)))
             for ii in range(len(self._rgrid)):
                 for jj in range(len(self._zgrid)):
                     zforceGrid[ii,jj]= evaluatezforces(self._rgrid[ii],self._zgrid[jj],self._origPot)
             self._zforceGrid= zforceGrid
         if self._logR:
             self._zforceInterp= interpolate.RectBivariateSpline(self._logrgrid,
                                                                 self._zgrid,
                                                                 self._zforceGrid,
                                                                 kx=3,ky=3,s=0.)
         else:
             self._zforceInterp= interpolate.RectBivariateSpline(self._rgrid,
                                                                 self._zgrid,
                                                                 self._zforceGrid,
                                                                 kx=3,ky=3,s=0.)
         if enable_c*ext_loaded:
             self._zforceGrid_splinecoeffs= calc_2dsplinecoeffs_c(self._zforceGrid)
     if interpDens:
         if False:
             raise NotImplementedError("Using C to calculate an interpolation grid for the density is not supported currently")
             self._densGrid, err= calc_dens_c(self._origPot,self._rgrid,self._zgrid)
         else:
             from galpy.potential import evaluateDensities
             densGrid= numpy.zeros((len(self._rgrid),len(self._zgrid)))
             for ii in range(len(self._rgrid)):
                 for jj in range(len(self._zgrid)):
                     densGrid[ii,jj]= evaluateDensities(self._rgrid[ii],self._zgrid[jj],self._origPot)
             self._densGrid= densGrid
         if self._logR:
             self._densInterp= interpolate.RectBivariateSpline(self._logrgrid,
                                                               self._zgrid,
                                                               numpy.log(self._densGrid+10.**-10.),
                                                               kx=3,ky=3,s=0.)
         else:
             self._densInterp= interpolate.RectBivariateSpline(self._rgrid,
                                                               self._zgrid,
                                                               numpy.log(self._densGrid+10.**-10.),
                                                               kx=3,ky=3,s=0.)
         if False:
             self._densGrid_splinecoeffs= calc_2dsplinecoeffs_c(self._densGrid)
     if interpvcirc:
         from galpy.potential import vcirc
         if not numcores is None:
             self._vcircGrid= multi.parallel_map((lambda x: vcirc(self._origPot,self._rgrid[x])),
                                                 range(len(self._rgrid)),numcores=numcores)
         else:
             self._vcircGrid= numpy.array([vcirc(self._origPot,r) for r in self._rgrid])
         if self._logR:
             self._vcircInterp= interpolate.InterpolatedUnivariateSpline(self._logrgrid,self._vcircGrid,k=3)
         else:
             self._vcircInterp= interpolate.InterpolatedUnivariateSpline(self._rgrid,self._vcircGrid,k=3)
     if interpdvcircdr:
         from galpy.potential import dvcircdR
         if not numcores is None:
             self._dvcircdrGrid= multi.parallel_map((lambda x: dvcircdR(self._origPot,self._rgrid[x])),
                                                    range(len(self._rgrid)),numcores=numcores)
         else:
             self._dvcircdrGrid= numpy.array([dvcircdR(self._origPot,r) for r in self._rgrid])
         if self._logR:
             self._dvcircdrInterp= interpolate.InterpolatedUnivariateSpline(self._logrgrid,self._dvcircdrGrid,k=3)
         else:
             self._dvcircdrInterp= interpolate.InterpolatedUnivariateSpline(self._rgrid,self._dvcircdrGrid,k=3)
     if interpepifreq:
         from galpy.potential import epifreq
         if not numcores is None:
             self._epifreqGrid= multi.parallel_map((lambda x: epifreq(self._origPot,self._rgrid[x])),
                                                   range(len(self._rgrid)),numcores=numcores)
         else:
             self._epifreqGrid= numpy.array([epifreq(self._origPot,r) for r in self._rgrid])
         indx= True-numpy.isnan(self._epifreqGrid)
         if numpy.sum(indx) < 4:
             if self._logR:
                 self._epifreqInterp= interpolate.InterpolatedUnivariateSpline(self._logrgrid[indx],self._epifreqGrid[indx],k=1)
             else:
                 self._epifreqInterp= interpolate.InterpolatedUnivariateSpline(self._rgrid[indx],self._epifreqGrid[indx],k=1)
         else:
             if self._logR:
                 self._epifreqInterp= interpolate.InterpolatedUnivariateSpline(self._logrgrid[indx],self._epifreqGrid[indx],k=3)
             else:
                 self._epifreqInterp= interpolate.InterpolatedUnivariateSpline(self._rgrid[indx],self._epifreqGrid[indx],k=3)
     if interpverticalfreq:
         from galpy.potential import verticalfreq
         if not numcores is None:
             self._verticalfreqGrid= multi.parallel_map((lambda x: verticalfreq(self._origPot,self._rgrid[x])),
                                                    range(len(self._rgrid)),numcores=numcores)
         else:
             self._verticalfreqGrid= numpy.array([verticalfreq(self._origPot,r) for r in self._rgrid])
         if self._logR:
             self._verticalfreqInterp= interpolate.InterpolatedUnivariateSpline(self._logrgrid,self._verticalfreqGrid,k=3)
         else:
             self._verticalfreqInterp= interpolate.InterpolatedUnivariateSpline(self._rgrid,self._verticalfreqGrid,k=3)
     return None
예제 #16
0
 def actionsFreqsAngles(self, *args, **kwargs):
     """
     NAME:
        actionsFreqsAngles
     PURPOSE:
        evaluate the actions, frequencies, and angles 
        (jr,lz,jz,Omegar,Omegaphi,Omegaz,angler,anglephi,anglez)
     INPUT:
        Either:
           a) R,vR,vT,z,vz,phi (MUST HAVE PHI)
           b) Orbit instance: initial condition used if that's it, orbit(t)
              if there is a time given as well
        scipy.integrate.quadrature keywords
     OUTPUT:
         (jr,lz,jz,Omegar,Omegaphi,Omegaz,angler,anglephi,anglez)
     HISTORY:
        2013-08-28 - Written - Bovy (IAS)
     """
     if ((self._c and not ('c' in kwargs and not kwargs['c']))\
             or (ext_loaded and (('c' in kwargs and kwargs['c'])))) \
             and _check_c(self._pot):
         if len(args) == 5:  #R,vR.vT, z, vz pragma: no cover
             raise IOError("Must specify phi")
         elif len(args) == 6:  #R,vR.vT, z, vz, phi
             R, vR, vT, z, vz, phi = args
         else:
             meta = actionAngle(*args)
             R = meta._R
             vR = meta._vR
             vT = meta._vT
             z = meta._z
             vz = meta._vz
             phi = meta._phi
         if isinstance(R, float):
             R = nu.array([R])
             vR = nu.array([vR])
             vT = nu.array([vT])
             z = nu.array([z])
             vz = nu.array([vz])
             phi = nu.array([phi])
         Lz = R * vT
         if self._useu0:
             #First calculate u0
             if 'u0' in kwargs:
                 u0 = nu.asarray(kwargs['u0'])
             else:
                 E = nu.array([
                     evaluatePotentials(R[ii], z[ii], self._pot) +
                     vR[ii]**2. / 2. + vz[ii]**2. / 2. + vT[ii]**2. / 2.
                     for ii in range(len(R))
                 ])
                 u0 = actionAngleStaeckel_c.actionAngleStaeckel_calcu0(
                     E, Lz, self._pot, self._delta)[0]
             kwargs.pop('u0', None)
         else:
             u0 = None
         jr, jz, Omegar, Omegaphi, Omegaz, angler, anglephi,anglez, err= actionAngleStaeckel_c.actionAngleFreqAngleStaeckel_c(\
             self._pot,self._delta,R,vR,vT,z,vz,phi,u0=u0)
         # Adjustements for close-to-circular orbits
         indx = nu.isnan(Omegar) * (jr < 10.**-3.) + nu.isnan(Omegaz) * (
             jz < 10.**-3.
         )  #Close-to-circular and close-to-the-plane orbits
         if nu.sum(indx) > 0:
             Omegar[indx] = [epifreq(self._pot, r) for r in R[indx]]
             Omegaphi[indx] = [omegac(self._pot, r) for r in R[indx]]
             Omegaz[indx] = [verticalfreq(self._pot, r) for r in R[indx]]
         if err == 0:
             return (jr, Lz, jz, Omegar, Omegaphi, Omegaz, angler, anglephi,
                     anglez)
         else:
             raise RuntimeError(
                 "C-code for calculation actions failed; try with c=False"
             )  #pragma: no cover
     else:  #pragma: no cover
         if 'c' in kwargs and kwargs['c'] and not self._c:  #pragma: no cover
             warnings.warn(
                 "C module not used because potential does not have a C implementation",
                 galpyWarning)
         raise NotImplementedError(
             "actionsFreqs with c=False not implemented")