def test_exponential_temporal_model_integral():
temporal_model = ExpDecayTemporalModel()
start = [1, 3, 5] * u.day
stop = [2, 3.5, 6] * u.day
t_ref = Time(55555, format="mjd")
gti = GTI.create(start, stop, reference_time=t_ref)
val = temporal_model.integral(gti.time_start, gti.time_stop)
assert len(val) == 3
assert_allclose(np.sum(val), 0.1024784, rtol=1e-5)
def test_exponential_temporal_model_evaluate():
t = Time(46301, format="mjd")
t_ref = 46300 * u.d
t0 = 2.0 * u.d
temporal_model = ExpDecayTemporalModel(t_ref=t_ref, t0=t0)
val = temporal_model(t)
assert_allclose(val, 0.6065306597126334, rtol=1e-5)
def fit_lc(datasets):
spatial_model1 = GaussianSpatialModel(lon_0="0.2 deg",
lat_0="0.1 deg",
sigma="0.3 deg",
frame="galactic")
spatial_model1.parameters["lon_0"].frozen = False
spatial_model1.parameters["lat_0"].frozen = False
spatial_model1.parameters["sigma"].frozen = True
spectral_model1 = PowerLawSpectralModel(index=3,
amplitude="2e-11 cm-2 s-1 TeV-1",
reference="1 TeV")
temporal_model1 = ExpDecayTemporalModel(t0="10 h", t_ref=gti_t0.mjd * u.d)
model_fit = SkyModel(
spatial_model=spatial_model1,
spectral_model=spectral_model1,
temporal_model=temporal_model1,
name="fit",
)
for dataset in datasets:
dataset.models = [
model_fit,
FoVBackgroundModel(dataset_name=dataset.name)
]
dataset.background_model.parameters["norm"].frozen = True
fit = Fit()
result = fit.run(datasets=datasets)
print(result.success)
print(result.parameters.to_table())
def simulate():
irfs = load_cta_irfs(
"$GAMMAPY_DATA/cta-1dc/caldb/data/cta/1dc/bcf/South_z20_50h/irf_file.fits"
)
# Reconstructed and true energy axis
center = SkyCoord(0.0, 0.0, unit="deg", frame="galactic")
energy_axis = MapAxis.from_edges(
np.logspace(-0.5, 1.0, 10), unit="TeV", name="energy", interp="log",
)
energy_axis_true = MapAxis.from_edges(
np.logspace(-1.2, 2.0, 31), unit="TeV", name="energy_true", interp="log",
)
on_region_radius = Angle("0.11 deg")
on_region = CircleSkyRegion(center=center, radius=on_region_radius)
pointing = SkyCoord(0.5, 0.5, unit="deg", frame="galactic")
spectral_model = PowerLawSpectralModel(
index=3, amplitude="1e-11 cm-2 s-1 TeV-1", reference="1 TeV"
)
temporal_model = ExpDecayTemporalModel(t0="6 h", t_ref=gti_t0.mjd * u.d)
model_simu = SkyModel(
spectral_model=spectral_model, temporal_model=temporal_model, name="model-simu",
)
lvtm = np.ones(N_OBS) * 1.0 * u.hr
tstart = 1.0 * u.hr
datasets = []
for i in range(N_OBS):
obs = Observation.create(
pointing=pointing,
livetime=lvtm[i],
tstart=tstart,
irfs=irfs,
reference_time=gti_t0,
)
empty = SpectrumDataset.create(
e_reco=energy_axis,
e_true=energy_axis_true,
region=on_region,
name=f"dataset_{i}",
)
maker = SpectrumDatasetMaker(selection=["aeff", "background", "edisp"])
dataset = maker.run(empty, obs)
dataset.models = model_simu
dataset.fake()
datasets.append(dataset)
tstart = tstart + 2.0 * u.hr
return datasets
def fit_lc(datasets):
spectral_model = PowerLawSpectralModel(
index=2.0, amplitude="1e-12 cm-2 s-1 TeV-1", reference="1 TeV"
)
temporal_model1 = ExpDecayTemporalModel(t0="10 h", t_ref=gti_t0.mjd * u.d)
model = SkyModel(
spectral_model=spectral_model,
temporal_model=temporal_model1,
name="model-test",
)
for dataset in datasets:
dataset.models = model
fit = Fit(datasets)
result = fit.run()
print(result)
print(result.parameters.to_table())
def simulate():
irfs = load_cta_irfs(
"$GAMMAPY_DATA/cta-1dc/caldb/data/cta/1dc/bcf/South_z20_50h/irf_file.fits"
)
center = SkyCoord(0.0, 0.0, unit="deg", frame="galactic")
energy_reco = MapAxis.from_edges(np.logspace(-1.0, 1.0, 10),
unit="TeV",
name="energy",
interp="log")
pointing = SkyCoord(0.5, 0.5, unit="deg", frame="galactic")
geom = WcsGeom.create(
skydir=center,
binsz=0.02,
width=(4, 4),
frame="galactic",
axes=[energy_reco],
)
energy_true = MapAxis.from_edges(np.logspace(-1.5, 1.5, 30),
unit="TeV",
name="energy_true",
interp="log")
spectral_model = PowerLawSpectralModel(index=3,
amplitude="1e-11 cm-2 s-1 TeV-1",
reference="1 TeV")
temporal_model = ExpDecayTemporalModel(t0="6 h", t_ref=gti_t0.mjd * u.d)
spatial_model = GaussianSpatialModel(lon_0="0.2 deg",
lat_0="0.1 deg",
sigma="0.3 deg",
frame="galactic")
model_simu = SkyModel(
spectral_model=spectral_model,
spatial_model=spatial_model,
temporal_model=temporal_model,
name="model-simu",
)
lvtm = np.ones(N_OBS) * 1.0 * u.hr
tstart = 1.0 * u.hr
datasets = []
for i in range(N_OBS):
obs = Observation.create(
pointing=pointing,
livetime=lvtm[i],
tstart=tstart,
irfs=irfs,
reference_time=gti_t0,
)
empty = MapDataset.create(geom,
name=f"dataset_{i}",
energy_axis_true=energy_true)
maker = MapDatasetMaker(
selection=["exposure", "background", "psf", "edisp"])
maker_safe_mask = SafeMaskMaker(methods=["offset-max"],
offset_max=4.0 * u.deg)
dataset = maker.run(empty, obs)
dataset = maker_safe_mask.run(dataset, obs)
dataset.models = [
model_simu,
FoVBackgroundModel(dataset_name=dataset.name)
]
dataset.fake()
datasets.append(dataset)
tstart = tstart + 2.0 * u.hr
return datasets
"""
# %%
# Example plot
# ------------
# Here is an example plot of the model:
from astropy import units as u
from astropy.time import Time
import matplotlib.pyplot as plt
from gammapy.modeling.models import Models, ExpDecayTemporalModel, SkyModel
t0 = "5 h"
t_ref = Time("2020-10-01")
time_range = [t_ref, t_ref + 1 * u.d]
expdecay_model = ExpDecayTemporalModel(t_ref=t_ref.mjd * u.d, t0=t0)
expdecay_model.plot(time_range)
plt.grid(which="both")
# %%
# YAML representation
# -------------------
# Here is an example YAML file using the model:
from gammapy.modeling.models import PowerLawSpectralModel
model = SkyModel(spectral_model=PowerLawSpectralModel(),
temporal_model=expdecay_model,
name="expdecay_model")
models = Models([model])
print(models.to_yaml())
def test_time_sampling(tmp_path):
time = np.arange(0, 10, 0.06) * u.hour
table = Table()
table["TIME"] = time
table["NORM"] = rate(time)
table.meta = dict(MJDREFI=55197.0, MJDREFF=0, TIMEUNIT="hour")
temporal_model = LightCurveTemplateTemporalModel(table)
filename = str(make_path(tmp_path / "tmp.fits"))
temporal_model.write(path=filename)
model_read = temporal_model.read(filename)
assert temporal_model.filename == filename
assert model_read.filename == filename
assert_allclose(model_read.table["TIME"].quantity.value, time.value)
t_ref = "2010-01-01T00:00:00"
t_min = "2010-01-01T00:00:00"
t_max = "2010-01-01T08:00:00"
sampler = temporal_model.sample_time(n_events=2,
t_min=t_min,
t_max=t_max,
random_state=0,
t_delta="10 min")
sampler = u.Quantity((sampler - Time(t_ref)).sec, "s")
assert len(sampler) == 2
assert_allclose(sampler.value, [12661.65802564, 7826.92991], rtol=1e-5)
table = Table()
table["TIME"] = time
table["NORM"] = np.ones(len(time))
table.meta = dict(MJDREFI=55197.0, MJDREFF=0, TIMEUNIT="hour")
temporal_model_uniform = LightCurveTemplateTemporalModel(table)
sampler_uniform = temporal_model_uniform.sample_time(n_events=2,
t_min=t_min,
t_max=t_max,
random_state=0,
t_delta="10 min")
sampler_uniform = u.Quantity((sampler_uniform - Time(t_ref)).sec, "s")
assert len(sampler_uniform) == 2
assert_allclose(sampler_uniform.value, [1261.65802564, 6026.9299098],
rtol=1e-5)
temporal_model = ConstantTemporalModel()
sampler_costant = temporal_model.sample_time(n_events=2,
t_min=t_min,
t_max=t_max,
random_state=0)
sampler_costant = u.Quantity((sampler_costant - Time(t_ref)).sec, "s")
assert len(sampler_costant) == 2
assert_allclose(sampler_costant.value, [4330.10377559, 3334.04566256],
rtol=1e-5)
temporal_model = ExpDecayTemporalModel(t_ref=Time(t_ref).mjd * u.d)
sampler_expo = temporal_model.sample_time(n_events=2,
t_min=t_min,
t_max=t_max,
random_state=0)
sampler_expo = u.Quantity((sampler_expo.mjd - Time(t_ref).mjd), "d")
assert sampler_expo.unit == u.d
assert_allclose(sampler_expo.to("s").value, [11824.1055276, 7273.04658336],
rtol=1e-8)