def addRoi(self, x=None, y=None, width=None, height=None, angle=0): #To get the current GUI situation guibean=RCPPlotter.getGuiBean(self.panel); roi = guibean.getROI() roiList=guibean[GuiParameters.ROIDATALIST] if None in [x, y, width, height, angle]:#No ROI parameter defined. print "No ROI info defined in the command. Use GUI ROI box selection" if roi is None: # No ROI selection on the gui print "Can not add ROI. Please either give ROI five parameters or draw a box in the GUI"; return; else: roi = RectangularROI(x,y, width, height, angle); if roiList is None:#No ROI Table on the gui roiList = RectangularROIList(); roiList.add(roi); #Update the view with new ROI table # guibean=GuiBean(); guibean[GuiParameters.ROIDATALIST] = roiList; RCPPlotter.setGuiBean(self.panel, guibean); self.getRoiTable();
def addRoi(self, x=None, y=None, width=None, height=None, angle=0):
#To get the current GUI situation
guibean = RCPPlotter.getGuiBean(self.panel)
#roi=gbean.get(GuiParameters.ROIDATA)
roi = guibean[GuiParameters.ROIDATA]
roiList = guibean[GuiParameters.ROIDATALIST]
if None in [x, y, width, height, angle]: #No ROI parameter defined.
print "No ROI info defined in the command. Use GUI ROI box selection"
if roi is None: # No ROI selection on the gui
print "Can not add ROI. Please either give ROI five parameters or draw a box in the GUI"
return
else:
roi = RectangularROI(x, y, width, height, angle)
if roiList is None: #No ROI Table on the gui
roiList = RectangularROIList()
roiList.add(roi)
#Update the view with new ROI table
guibean = GuiBean()
guibean[GuiParameters.ROIDATALIST] = roiList
RCPPlotter.setGuiBean(self.panel, guibean)
self.getRoiTable()
def clearRois(self): guibean=RCPPlotter.getGuiBean(self.panel); if GuiParameters.ROIDATALIST in guibean: guibean[GuiParameters.ROIDATALIST]=None; RCPPlotter.setGuiBean(self.panel, guibean); self.roiList = []; self.updateRoiList();
def clearRoi(self):
roi = RectangularROI()
roiList = RectangularROIList()
guibean = GuiBean()
guibean[GuiParameters.ROIDATA] = roi
guibean[GuiParameters.ROIDATALIST] = roiList
RCPPlotter.setGuiBean(self.panel, guibean)
self.updateRoiList()
def display(self, fileName):
if fileName is None:
print "Please give a full file name to display";
return;
else:
dataset = self.loadDataset(fileName)
if self.panel:
RCPPlotter.imagePlot(self.panel, dataset);
else:
print "No panel set to display"
raise Exception("No panel_name set in %s. Set this or set %s.setAlive(False)" % (self.name,self.name));
def display(self,dataset=None):
if dataset is None:
if self.dataset is None:
print "No dataset to display";
return;
else:
dataset = self.dataset;
if self.panel:
RCPPlotter.imagePlot(self.panel, dataset);
else:
print "No panel set to display"
raise Exception("No panel_name set in %s. Set this or set %s.setAlive(False)" % (self.name,self.name));
def display(self, dataset=None):
if dataset is None:
if self.dataset is None:
print "No dataset to display";
return;
else:
dataset = self.dataset;
if self.panel:
RCPPlotter.imagePlot(self.panel, dataset);
else:
print "No panel set to display"
raise Exception("No panel_name set in %s. Set this or set %s.setAlive(False)" % (self.name,self.name));
def updateRoiList(self):
guibean = RCPPlotter.getGuiBean(self.panel)
roiList = guibean[GuiParameters.ROIDATALIST]
if isinstance(roiList, RectangularROIList):
self.roiList = roiList
if self.roiList is None:
raise RuntimeError("No ROI Defined Error")
def getRoiSelectionBox(self): #Get current ROI info from the View guibean=RCPPlotter.getGuiBean(self.panel); roi = guibean.getROI() if roi is None: print None; else: print self.getRoiParameters(roi); return roi;
def display(self,file=None):
if file==None:
file = self.getFullFileName()
fileLoader = UViewDetectorClass.ImageFileLoaders[os.path.splitext(file)[-1].split('.')[-1].upper()];
self.data.load( fileLoader(file) );
dataset = self.data.getAxis(0);
if self.panel:
if self.logScale:
RCPPlotter.imagePlot(self.panel, DatasetUtils.lognorm(dataset)); #For RCP GUI
else:
RCPPlotter.imagePlot(self.panel, dataset); #For RCP GUI
else:
print "No panel set to display"
raise Exception("No panel_name set in %s. Set this or set %s.setAlive(False)" % (self.name,self.name));
def display(self, file=None):
if file == None:
file = self.getFullFileName()
# self.data.loadPilatusData(file)
self.data.load(PilatusTiffLoader(file))
dataset = self.data.getAxis(0)
if self.panel:
if self.logScale:
RCPPlotter.imagePlot(self.panel, DatasetMaths.lognorm(dataset))
#For RCP GUI
else:
RCPPlotter.imagePlot(self.panel, dataset)
#For RCP GUI
else:
print "No panel set to display"
raise Exception(
"No panel_name set in %s. Set this or set %s.setAlive(False)" %
(self.name, self.name))
def getRoiSelectionBox(self):
#Get current ROI info from the View
guibean = RCPPlotter.getGuiBean(self.panel)
#roi=gbean.get(GuiParameters.ROIDATA)
roi = guibean[GuiParameters.ROIDATA]
if roi is None:
print None
else:
print self.getRoiParameters(roi)
return roi
def getRoi(self):
#Get the ROI info from GUI
#To get the current GUI situation
guibean = RCPPlotter.getGuiBean(self.panel)
roiList = guibean[GuiParameters.ROIDATALIST]
# for roi in roiList:
# [x,y,w,h,angle]=self.getRoiParameters(roi);
roi = roiList[0]
[x, y, w, h, angle] = self.getRoiParameters(roi)
return roi
def updateRoiList(self): guibean=RCPPlotter.getGuiBean(self.panel); roiList=guibean[GuiParameters.ROIDATALIST]; tempRoiList=[]; if not isinstance(roiList, RectangularROIList):#No rectangular roi list defined. return else: for roi in roiList: if isinstance(roi, RectangularROI): tempRoiList.append(roi); self.roiList = tempRoiList;
#Example images from : "/dls/i06/data/2010/si0/28431_UViewImage" or "/home/xr56/testData/28431_UViewImage/"
from gda.analysis import RCPPlotter
import scisoftpy.plot as dpl
run "scisoft/peem_analysis"
pp=RCPPlotter()
sourceDir = "/dls/i06/tmp/test"
targetDir = "/dls/i06/tmp/test"
#To load image
#pp.scanForImages("Image Explorer", "/dls/i06/data/2010/cm1895-1/demoImages")
#pp.scanForImages("Image Explorer", sourceDir)
load_peem(sourceDir);
#Users need to select the images and send them to server.
[cdMap, positiveImage, negativeImage, averageImages] = process_peem(targetDir)
#to plot cd map
dpl.image(cdMap, name="PEEM Image")
#to plot the positive image
dpl.image(positiveImage, name="PEEM Image")
#to plot the negative image
dpl.image(negativeImage, name="PEEM Image")
def setPlotMode(self, plotmode=GuiPlotMode.TWOD): # guibean=GuiBean(); guibean=RCPPlotter.getGuiBean(self.panel); guibean[GuiParameters.PLOTMODE]=plotmode; RCPPlotter.setGuiBean(self.panel, guibean);
from gda.analysis import RCPPlotter
from uk.ac.diamond.scisoft.analysis.plotserver import GuiBean
from uk.ac.diamond.scisoft.analysis.plotserver import GuiParameters
from org.eclipse.dawnsci.analysis.dataset.roi import RectangularROI, RectangularROIList
from org.eclipse.january.dataset import DatasetFactory
pp = RCPPlotter()
pp.plot("Area Detector", DatasetFactory.createFromObject(range(100)))
#This is used to plot on the PlotView
#d = DataSet.arange(10000)
#d.shape = [100,100]
d = DatasetFactory.createRange(10000)
d.shape = [100, 100]
# or, d = DataSet.arange(10000).reshape((100,100)) in GDA v8.12
pp.imagePlot("Area Detector", d)
#This is used to plot on the ImageExploreView
pp.plotImageToGrid("Image Explorer", DatasetFactory.ones([20, 30]))
pp.plotImageToGrid("Image Explorer", "/home/xr56/temp/p100kImage26455.tif")
#RCPPlotter().plotImageToGrid("Image Explorer","/home/xr56/temp/pilatus100K/p686905.tif")
RCPPlotter().scanForImages("Image Explorer",
"/dls/i06/data/2010/cm1895-1/demoImages")
#ROI
#Get ROI info
def setPlotMode(self, plotmode=GuiPlotMode.TWOD):
guibean = GuiBean()
guibean[GuiParameters.ROIDATA] = plotmode
RCPPlotter.setGuiBean(self.panel, guibean)