class TrailsLayer(BaseLayer):
def __init__(self):
self.data = read_csv('SLOCs.csv')
self.cmap = colorbrewer(self.data['name'], alpha=220)
self.t = self.data['timestamp'].min()
self.painter = BatchPainter()
def draw(self, proj, mouse_x, mouse_y, ui_manager):
self.painter = BatchPainter()
df = self.data.where((self.data['timestamp'] > self.t) & (self.data['timestamp'] <= self.t + 24*3600)) #set minimum time interval
for name in set(df['name']):
grp = df.where(df['name'] == name)
self.painter.set_color('blue') #set color, default: self.cmap[name]
x0, y0 = proj.lonlat_to_screen(grp['Slon'], grp['Slat'])
x1, y1 = proj.lonlat_to_screen(grp['Flon'], grp['Flat'])
self.painter.points(x0, y0, 3)
self.painter.lines(x0,y0,x1,y1,width=3)
self.t += 24*3600 #set animation step size
if self.t > self.data['timestamp'].max():
self.t = self.data['timestamp'].min()
self.painter.batch_draw()
ui_manager.info(epoch_to_str(self.t))
def bbox(self):
return BoundingBox(north=9, west=110, south=1, east=95) #set boundingbox
class GraphLayer(BaseLayer):
def __init__(self, data, src_lat, src_lon, dest_lat, dest_lon, linewidth=1, alpha=220, color='hot'):
"""Create a graph drawing a line between each pair of (src_lat, src_lon) and (dest_lat, dest_lon)
:param data: data access object
:param src_lat: field name of source latitude
:param src_lon: field name of source longitude
:param dest_lat: field name of destination latitude
:param dest_lon: field name of destination longitude
:param linewidth: line width
:param alpha: color alpha
:param color: color or colormap
"""
self.data = data
self.src_lon = src_lon
self.src_lat = src_lat
self.dest_lon = dest_lon
self.dest_lat = dest_lat
self.linewidth = linewidth
alpha = alpha
self.color = color
if type(self.color) == str:
self.cmap = colors.ColorMap(self.color, alpha)
def invalidate(self, proj):
self.painter = BatchPainter()
x0, y0 = proj.lonlat_to_screen(self.data[self.src_lon], self.data[self.src_lat])
x1, y1 = proj.lonlat_to_screen(self.data[self.dest_lon], self.data[self.dest_lat])
if type(self.color) == list:
self.painter.set_color(self.color)
self.painter.lines(x0, y0, x1, y1, width=self.linewidth)
else:
manhattan = np.abs(x0-x1) + np.abs(y0-y1)
vmax = manhattan.max()
distances = np.logspace(0, log10(manhattan.max()), 20)
for i in range(len(distances)-1, 1, -1):
mask = (manhattan > distances[i-1]) & (manhattan <= distances[i])
self.painter.set_color(self.cmap.to_color(distances[i], vmax, 'log'))
self.painter.lines(x0[mask], y0[mask], x1[mask], y1[mask], width=self.linewidth)
def draw(self, proj, mouse_x, mouse_y, ui_manager):
self.painter.batch_draw()
def bbox(self):
return BoundingBox.from_points(lons=np.hstack([self.data[self.src_lon], self.data[self.dest_lon]]),
lats=np.hstack([self.data[self.src_lat], self.data[self.dest_lat]]))
class DelaunayLayer(BaseLayer):
def __init__(self,
data,
line_color=None,
line_width=2,
cmap=None,
max_lenght=100):
"""
Draw a delaunay triangulation of the points
:param data: data access object
:param line_color: line color
:param line_width: line width
:param cmap: color map
:param max_lenght: scaling constant for coloring the edges
"""
self.data = data
if cmap is None and line_color is None:
raise Exception('need either cmap or line_color')
if cmap is not None:
cmap = colors.ColorMap(cmap, alpha=196)
self.cmap = cmap
self.line_color = line_color
self.line_width = line_width
self.max_lenght = max_lenght
@staticmethod
def _get_area(p):
x1, y1, x2, y2, x3, y3 = p
return 0.5 * (x1 * (y2 - y3) + x2 * (y3 - y1) + x3 * (y1 - y2))
def invalidate(self, proj):
try:
from scipy.spatial.qhull import Delaunay
except ImportError:
print('DelaunayLayer needs scipy >= 0.12')
raise
self.painter = BatchPainter()
x, y = proj.lonlat_to_screen(self.data['lon'], self.data['lat'])
points = list(set(zip(x, y)))
dela = Delaunay(points)
edges = set()
for tria in dela.vertices:
edges.add((tria[0], tria[1]))
edges.add((tria[1], tria[2]))
edges.add((tria[2], tria[0]))
allx0 = []
ally0 = []
allx1 = []
ally1 = []
colors = []
for a, b in edges:
x0, y0 = dela.points[a]
x1, y1 = dela.points[b]
allx0.append(x0)
ally0.append(y0)
allx1.append(x1)
ally1.append(y1)
if self.line_color:
colors.append(self.line_color)
colors.append(self.line_color)
elif self.cmap:
l = math.sqrt((x0 - x1)**2 + (y0 - y1)**2)
c = self.cmap.to_color(l, self.max_lenght, 'log')
colors.append(c)
colors.append(c)
self.painter.lines(allx0,
ally0,
allx1,
ally1,
colors,
width=self.line_width)
def draw(self, proj, mouse_x, mouse_y, ui_manager):
self.painter.batch_draw()
def bbox(self):
return BoundingBox.from_points(lons=self.data['lon'],
lats=self.data['lat'])
class GraphLayer(BaseLayer):
def __init__(self,
data,
src_lat,
src_lon,
dest_lat,
dest_lon,
linewidth=1,
alpha=220,
color='hot'):
"""Create a graph drawing a line between each pair of (src_lat, src_lon) and (dest_lat, dest_lon)
:param data: data access object
:param src_lat: field name of source latitude
:param src_lon: field name of source longitude
:param dest_lat: field name of destination latitude
:param dest_lon: field name of destination longitude
:param linewidth: line width
:param alpha: color alpha
:param color: color or colormap
"""
self.data = data
self.src_lon = src_lon
self.src_lat = src_lat
self.dest_lon = dest_lon
self.dest_lat = dest_lat
self.linewidth = linewidth
alpha = alpha
self.color = color
if type(self.color) == str:
self.cmap = colors.ColorMap(self.color, alpha)
def invalidate(self, proj):
self.painter = BatchPainter()
x0, y0 = proj.lonlat_to_screen(self.data[self.src_lon],
self.data[self.src_lat])
x1, y1 = proj.lonlat_to_screen(self.data[self.dest_lon],
self.data[self.dest_lat])
if type(self.color) == list:
self.painter.set_color(self.color)
self.painter.lines(x0, y0, x1, y1, width=self.linewidth)
else:
manhattan = np.abs(x0 - x1) + np.abs(y0 - y1)
vmax = manhattan.max()
distances = np.logspace(0, log10(manhattan.max()), 20)
for i in range(len(distances) - 1, 1, -1):
mask = (manhattan > distances[i - 1]) & (manhattan <=
distances[i])
self.painter.set_color(
self.cmap.to_color(distances[i], vmax, 'log'))
self.painter.lines(x0[mask],
y0[mask],
x1[mask],
y1[mask],
width=self.linewidth)
def draw(self, proj, mouse_x, mouse_y, ui_manager):
self.painter.batch_draw()
def bbox(self):
return BoundingBox.from_points(
lons=np.hstack([self.data[self.src_lon],
self.data[self.dest_lon]]),
lats=np.hstack([self.data[self.src_lat],
self.data[self.dest_lat]]))
class LineLayer(layers.BaseLayer):
"""
Draws line connecting points in hurricane path
"""
def __init__(self, data, num, color=None, point_size=2, linewidth=1, f_tooltip=None):
"""
Creates a LineLayer for the python geoplotlib library
:param data: DataAccessObject of latitudes and longitudes
:param num: number of data points in dat
:param color: color of lines, just to red if none
:param point_size: size of points
:param linewidth: width of lines
:param f_tooltip: an attribute of geoplotlib's BaseLayer that is not used
"""
self.data = data
self.indexlst = num
self.color = color
if self.color is None:
self.color = [255, 0, 0]
self.point_size = point_size
self.f_tooltip = f_tooltip
self.linewidth = linewidth
self.hotspots = HotspotManager()
def invalidate(self, proj):
"""
This method is called each time layers need to be redrawn, i.e. on zoom.
Typically in this method a BatchPainter is instantiated and all the rendering is performed
:param proj: the current Projector object
"""
self.painter = BatchPainter()
self.painter.set_color(self.color)
x1, y1 = proj.lonlat_to_screen(self.data['lon'], self.data['lat'])
self.painter.points(x1, y1, 2 * self.point_size, False)
for i in self.indexlst:
if i < len(self.data['lon']) - 1:
x1 = self.data['lon'][i]
y1 = self.data['lat'][i]
x2 = self.data['lon'][i+1]
y2 = self.data['lat'][i+1]
x1, y1 = proj.lonlat_to_screen(x1, y1)
x2, y2 = proj.lonlat_to_screen(x2, y2)
self.painter.lines(x1, y1, x2, y2, width=self.linewidth)
if self.f_tooltip:
for i in range(0, len(x1)):
record = {k: self.data[k][i] for k in self.data.keys()}
self.hotspots.add_rect(x1[i] - self.point_size, y1[i] - self.point_size,
2 * self.point_size, 2 * self.point_size,
self.f_tooltip(record))
def draw(self, proj, mouse_x, mouse_y, ui_manager):
"""
This method is called at every frame, and typically executes BatchPainter.batch_draw()
:param proj: the current Projector object
:param mouse_x: mouse x
:param mouse_y: mouse y
:param ui_manager: the current UiManager
"""
self.painter.batch_draw()
picked = self.hotspots.pick(mouse_x, mouse_y)
if picked:
ui_manager.tooltip(picked)
def bbox(self):
"""
Return the bounding box for this layer
"""
return BoundingBox.from_points(lons=self.data['lon'], lats=self.data['lat'])
def on_key_release(self, key, modifiers):
"""
Override this method for custom handling of keystrokes
:param key: the key that has been released
:param modifiers: the key modifiers
:return: True if the layer needs to call invalidate
"""
return False
class GraphLayer(BaseLayer):
def __init__(self,
data,
src_lat,
src_lon,
dest_lat,
dest_lon,
linewidth=1,
alpha=220,
color='hot',
levels=10,
color_by=None,
seg_scale='log'):
"""Create a graph drawing a line between each pair of (src_lat, src_lon) and (dest_lat, dest_lon)
:param data: data access object
:param src_lat: field name of source latitude
:param src_lon: field name of source longitude
:param dest_lat: field name of destination latitude
:param dest_lon: field name of destination longitude
:param linewidth: line width
:param alpha: color alpha
:param color: color or colormap
:param levels: coloring levels
:param color_by: attribute name for color, default using node distance
:param seg_scale: coloring data segamentation sacle, 'log' or 'lin',
'lin' only used if not by distance
"""
self.data = data
self.src_lon = src_lon
self.src_lat = src_lat
self.dest_lon = dest_lon
self.dest_lat = dest_lat
self.linewidth = linewidth
alpha = alpha
self.color = color
if type(self.color) == str:
self.cmap = colors.ColorMap(self.color, alpha, levels=levels)
if color_by is None:
self.color_by = 'distance'
self.seg_scale = seg_scale
def invalidate(self, proj):
self.painter = BatchPainter()
x0, y0 = proj.lonlat_to_screen(self.data[self.src_lon],
self.data[self.src_lat])
x1, y1 = proj.lonlat_to_screen(self.data[self.dest_lon],
self.data[self.dest_lat])
if type(self.color) == list:
self.painter.set_color(self.color)
self.painter.lines(x0, y0, x1, y1, width=self.linewidth)
else:
if self.color_by == 'distance':
manhattan = np.abs(x0 - x1) + np.abs(y0 - y1)
vmax = manhattan.max()
segmentations = np.logspace(0, log10(vmax), 20)
self.seg_scale = 'log'
else:
manhattan = self.data[self.color_by]
vmax = manhattan.max()
if self.seg_scale == 'log':
# value 20 maybe should be optional
segmentations = np.logspace(0, log10(vmax), 20)
else:
# linear
segmentations = np.linspace(0, vmax, 20)
for i in range(len(segmentations) - 1, 1, -1):
mask = (manhattan > segmentations[i - 1]) & (manhattan <=
segmentations[i])
self.painter.set_color(
self.cmap.to_color(segmentations[i], vmax, self.seg_scale))
self.painter.lines(x0[mask],
y0[mask],
x1[mask],
y1[mask],
width=self.linewidth)
def draw(self, proj, mouse_x, mouse_y, ui_manager):
self.painter.batch_draw()
def bbox(self):
return BoundingBox.from_points(
lons=np.hstack([self.data[self.src_lon],
self.data[self.dest_lon]]),
lats=np.hstack([self.data[self.src_lat],
self.data[self.dest_lat]]))
class AnimatedProcess(BaseLayer):
def __init__(self, network, edgelists, show_addresses=False, save_frames=False, line_width=1.3):
# Set network and edge lists.
self.network = network
self.edgelists = edgelists
self.num_frames = len(self.edgelists)
# Set flag specifying whether to show addresses.
self.show_addresses = show_addresses
# Set flag specifying whether to save frames.
self.save_frames = save_frames
# Set line width.
self.line_width = line_width
# Initialize state counter.
self.count = 0
# Initialize geolocator for retrieving addresses.
geolocator = Nominatim(user_agent='test')
# Set coordinates of nodes and get addresses.
self.node_coordinates = np.empty((2, network.number_of_nodes()), dtype=float)
self.node_addresses = []
for idx, node in enumerate(network.nodes()):
self.node_coordinates[:, idx] = np.array(self.network.nodes[node]['latlon'])
if self.show_addresses:
address = geolocator.reverse(self.node_coordinates[:, idx]).address
self.node_addresses.append(address[:address.index(',', address.index(',') + 1)])
def invalidate(self, proj):
self.x, self.y = proj.lonlat_to_screen(self.node_coordinates[1, :], self.node_coordinates[0, :])
def draw(self, proj, mouse_x, mouse_y, ui_manager):
# Prepare edges for next frame.
self.edge_src = np.empty((2, len(self.edgelists[self.count])), dtype=float)
self.edge_dst = np.empty((2, len(self.edgelists[self.count])), dtype=float)
for idx, edge in enumerate(self.edgelists[self.count]):
self.edge_src[:, idx] = self.network.nodes[edge[0]]['latlon']
self.edge_dst[:, idx] = self.network.nodes[edge[1]]['latlon']
self.edge_src_trans_x, self.edge_src_trans_y = proj.lonlat_to_screen(self.edge_src[1, :], self.edge_src[0, :])
self.edge_dst_trans_x, self.edge_dst_trans_y = proj.lonlat_to_screen(self.edge_dst[1, :], self.edge_dst[0, :])
# Initialize painter, plot nodes and addresses.
self.painter = BatchPainter()
self.painter.points(self.x, self.y, point_size=10, rounded=True)
if self.show_addresses:
self.painter.labels(self.x, self.y, self.node_addresses, font_size=10, anchor_x='left')
# Plot edges.
self.painter.set_color([255, 0, 0])
self.painter.lines(self.edge_src_trans_x, self.edge_src_trans_y, self.edge_dst_trans_x, self.edge_dst_trans_y, width=self.line_width)
# Draw and increment counter.
self.painter.batch_draw()
if self.count < len(self.edgelists) - 1:
self.count += 1
self.count = self.count % self.num_frames
print("count: {0}/{1}".format(self.count, self.num_frames))
# If saving frames.
if self.save_frames:
GeoplotlibApp.screenshot(f'./results/animation_frames/{self.count}.png')
class DelaunayLayer(BaseLayer):
def __init__(self, data, line_color=None, line_width=2, cmap=None, max_lenght=100):
"""
Draw a delaunay triangulation of the points
:param data: data access object
:param line_color: line color
:param line_width: line width
:param cmap: color map
:param max_lenght: scaling constant for coloring the edges
"""
self.data = data
if cmap is None and line_color is None:
raise Exception('need either cmap or line_color')
if cmap is not None:
cmap = colors.ColorMap(cmap, alpha=196)
self.cmap = cmap
self.line_color = line_color
self.line_width = line_width
self.max_lenght = max_lenght
@staticmethod
def _get_area(p):
x1, y1, x2, y2, x3, y3 = p
return 0.5*(x1*(y2-y3)+x2*(y3-y1)+x3*(y1-y2))
def invalidate(self, proj):
try:
from scipy.spatial.qhull import Delaunay
except ImportError:
print('DelaunayLayer needs scipy >= 0.12')
raise
self.painter = BatchPainter()
x, y = proj.lonlat_to_screen(self.data['lon'], self.data['lat'])
points = list(set(zip(x,y)))
dela = Delaunay(points)
edges = set()
for tria in dela.vertices:
edges.add((tria[0], tria[1]))
edges.add((tria[1], tria[2]))
edges.add((tria[2], tria[0]))
allx0 = []
ally0 = []
allx1 = []
ally1 = []
colors = []
for a, b in edges:
x0, y0 = dela.points[a]
x1, y1 = dela.points[b]
allx0.append(x0)
ally0.append(y0)
allx1.append(x1)
ally1.append(y1)
if self.line_color:
colors.append(self.line_color)
colors.append(self.line_color)
elif self.cmap:
l = math.sqrt((x0 - x1)**2+(y0 - y1)**2)
c = self.cmap.to_color(l, self.max_lenght, 'log')
colors.append(c)
colors.append(c)
self.painter.lines(allx0, ally0, allx1, ally1, colors, width=self.line_width)
def draw(self, proj, mouse_x, mouse_y, ui_manager):
self.painter.batch_draw()
def bbox(self):
return BoundingBox.from_points(lons=self.data['lon'], lats=self.data['lat'])
