from Ipt_module import *
from Params import *
Params()
from getSettings import getSettings
from processingJobScript import *
from calMapLocal import calMapLocal
from checkStatus import checkStatus
from combineMaps import combineMaps
if __name__ == '__main__':
# ---- input settings ---- #
celltype,runnum,\
jobname,usrname,ptn,\
chrom_lst=getSettings(sys.argv[1:])
# ---- cluster computing or locally ---- #
clus_opt = raw_input(" > Computing clusters available?[y/n] ")
# ---- cluster available ---- #
if clus_opt == 'y':
# ---- prepare the job script for calculating cmaps ---- #
processingJobScript(celltype, runnum, jobname, ptn, chrom_lst)
# ---- check the job status ---- #
checkStatus(usrname, jobname)
# ---- compute locally ---- #
else:
calMapLocal(celltype, runnum, chrom_lst)
# generate VMD scripts
import sys
sys.path.append('./VMDScript/')
from getSettings import getSettings
from genVMDScript import *
if __name__ == '__main__':
# ---- input settings ---- #
celltype, chrom_lst = getSettings(sys.argv[1:])
# ---- generate individual VMD scripts ---- #
for chrId in chrom_lst:
genVMDScript(celltype, chrId)
print
