def test_05_get_genome_raises_warning_if_no_genome(self):
"""
this fails, but I think the warning works.
output of running at cli with 'abcde'
get_genome.py:21: NoMatchingSequenceWarning: No sequence was found for organism: abcd
warnings.warn('No sequence was found for organism: ' + ORG_NAME, NoMatchingSequenceWarning)
"""
self.assertWarns(get_genome.NoMatchingSequenceWarning,get_genome.get_genome_seq('abcd'))
def test_03_get_genome_returns_correct_genome(self):
self.assertEqual(get_genome.get_genome_seq(self.test_name).name,'gi|170079663|ref|NC_010473.1|')
def test_04_get_genome_returns_full_genome(self):
self.assertEqual(len(get_genome.get_genome_seq(self.test_name).seq._data),4686137)
def test_02_get_genome_returns_correct_object(self):
self.assertIsInstance(get_genome.get_genome_seq(self.test_name),SeqIO.SeqRecord)