def test_delete_project_when_empty(self, gigantum_project_fixture):
gigaleaf = Gigaleaf()
assert Path(gigaleaf.overleaf.overleaf_config_file).is_file() is True
gigaleaf.delete()
assert Path(Gigantum.get_overleaf_root_directory()).is_dir() is False
assert Path(gigaleaf.overleaf.overleaf_config_file).is_file() is False
def test_link_image_and_sync(self, gigantum_project_fixture):
gigaleaf = Gigaleaf()
assert Path(Gigantum.get_overleaf_root_directory(), 'project',
'gigantum', 'metadata', 'fig1_png.json').is_file() is False
gigaleaf.link_image('../output/fig1.png',
caption="My figure",
label='fig111',
alignment='right',
width='0.3\\textwidth')
assert Path(Gigantum.get_overleaf_root_directory(), 'project',
'gigantum', 'metadata', 'fig1_png.json').is_file() is True
gigaleaf.sync()
assert Path(Gigantum.get_overleaf_root_directory(), 'project',
'gigantum', 'data', 'fig1.png').is_file() is True
# Delete everything in untracked, reinit, and should still see the files
shutil.rmtree(gigaleaf.overleaf.overleaf_repo_directory)
gigaleaf = None
assert Path(Gigantum.get_overleaf_root_directory(), 'project',
'gigantum', 'metadata', 'fig1_png.json').is_file() is False
assert Path(Gigantum.get_overleaf_root_directory(), 'project',
'gigantum', 'data', 'fig1.png').is_file() is False
gigaleaf = Gigaleaf()
assert Path(Gigantum.get_overleaf_root_directory(), 'project',
'gigantum', 'metadata', 'fig1_png.json').is_file() is True
assert Path(Gigantum.get_overleaf_root_directory(), 'project',
'gigantum', 'data', 'fig1.png').is_file() is True
def test_link_csv_file_and_sync(self, gigantum_project_fixture):
gigaleaf = Gigaleaf()
assert Path(Gigantum.get_overleaf_root_directory(), 'project',
'gigantum', 'metadata',
'table_pkl.json').is_file() is False
gigaleaf.link_dataframe('../output/table.pkl',
to_latex_kwargs={
"index": False,
"caption": "My table"
})
assert Path(Gigantum.get_overleaf_root_directory(), 'project',
'gigantum', 'metadata', 'table_pkl.json').is_file() is True
gigaleaf.sync()
assert Path(Gigantum.get_overleaf_root_directory(), 'project',
'gigantum', 'subfiles', 'table_pkl.tex').is_file() is True
# Delete everything in untracked, reinit, and should still see the files
shutil.rmtree(gigaleaf.overleaf.overleaf_repo_directory)
gigaleaf = None
assert Path(Gigantum.get_overleaf_root_directory(), 'project',
'gigantum', 'metadata',
'table_pkl.json').is_file() is False
assert Path(Gigantum.get_overleaf_root_directory(), 'project',
'gigantum', 'subfiles', 'table_pkl.tex').is_file() is False
gigaleaf = Gigaleaf()
assert Path(Gigantum.get_overleaf_root_directory(), 'project',
'gigantum', 'metadata', 'table_pkl.json').is_file() is True
assert Path(Gigantum.get_overleaf_root_directory(), 'project',
'gigantum', 'subfiles', 'table_pkl.tex').is_file() is True
def test_link_image_with_defaults(self, gigantum_project_fixture):
gigaleaf = Gigaleaf()
assert Path(Gigantum.get_overleaf_root_directory(), 'project',
'gigantum', 'metadata', 'fig1_png.json').is_file() is False
gigaleaf.link_image('../output/fig1.png')
metadata_file = Path(Gigantum.get_overleaf_root_directory(), 'project',
'gigantum', 'metadata', 'fig1_png.json')
assert metadata_file.is_file() is True
with open(metadata_file, 'rt') as mf:
data = json.load(mf)
assert data['gigantum_relative_path'] == 'output/fig1.png'
assert data['gigantum_version'] != 'init'
assert len(data['gigantum_version']) == 40
assert data['classname'] == 'ImageFile'
assert data['content_hash'] == 'init'
assert data['caption'] is None
assert data['label'] == 'fig:fig1'
assert data['width'] == '0.5\\textwidth'
assert data['alignment'] == 'center'
def test_delete_project_link(self, gigantum_project_fixture):
gigaleaf = Gigaleaf()
assert Path(Gigantum.get_overleaf_root_directory(), 'project',
'gigantum', 'metadata', 'fig1_png.json').is_file() is False
gigaleaf.link_image('../output/fig1.png')
assert Path(Gigantum.get_overleaf_root_directory(), 'project',
'gigantum', 'metadata', 'fig1_png.json').is_file() is True
gigaleaf.sync()
assert Path(Gigantum.get_overleaf_root_directory(), 'project',
'gigantum', 'data', 'fig1.png').is_file() is True
gigaleaf.delete()
assert Path(Gigantum.get_overleaf_root_directory()).is_dir() is False
assert Path(gigaleaf.overleaf.overleaf_config_file).is_file() is False
def test_update_image(self, gigantum_project_fixture):
gigaleaf = Gigaleaf()
assert Path(Gigantum.get_overleaf_root_directory(), 'project',
'gigantum', 'metadata', 'fig1_png.json').is_file() is False
gigaleaf.link_image('../output/fig1.png', width='0.8\\textwidth')
assert Path(Gigantum.get_overleaf_root_directory(), 'project',
'gigantum', 'metadata', 'fig1_png.json').is_file() is True
gigaleaf.sync()
assert Path(Gigantum.get_overleaf_root_directory(), 'project',
'gigantum', 'data', 'fig1.png').is_file() is True
metadata_file = Path(Gigantum.get_overleaf_root_directory(), 'project',
'gigantum', 'metadata', 'fig1_png.json')
with open(metadata_file, 'rt') as mf:
data = json.load(mf)
first_hash = data['content_hash']
test_dir = Path(__file__).parent.absolute()
shutil.copyfile(
Path(test_dir, 'resources', 'fig1.png').as_posix(),
Path(Gigantum.get_project_root(), 'output', 'fig1.png'))
gigaleaf.sync()
metadata_file = Path(Gigantum.get_overleaf_root_directory(), 'project',
'gigantum', 'metadata', 'fig1_png.json')
with open(metadata_file, 'rt') as mf:
data = json.load(mf)
assert first_hash != data['content_hash']
def test_link_image_does_not_exist(self, gigantum_project_fixture):
gigaleaf = Gigaleaf()
with pytest.raises(ValueError):
gigaleaf.link_image('output/FILEDOESNOTEXIST.png')
def test_unlink_image(self, gigantum_project_fixture):
gigaleaf = Gigaleaf()
assert Path(Gigantum.get_overleaf_root_directory(), 'project',
'gigantum', 'metadata', 'fig1_png.json').is_file() is False
gigaleaf.link_image('../output/fig1.png')
assert Path(Gigantum.get_overleaf_root_directory(), 'project',
'gigantum', 'metadata', 'fig1_png.json').is_file() is True
gigaleaf.sync()
assert Path(Gigantum.get_overleaf_root_directory(), 'project',
'gigantum', 'data', 'fig1.png').is_file() is True
gigaleaf.unlink_image('../output/fig1.png')
assert Path(Gigantum.get_overleaf_root_directory(), 'project',
'gigantum', 'metadata', 'fig1_png.json').is_file() is False
assert Path(Gigantum.get_overleaf_root_directory(), 'project',
'gigantum', 'data', 'fig1.png').is_file() is False
gigaleaf.sync()
# Delete everything in untracked, reinit, and should still not see the files
shutil.rmtree(gigaleaf.overleaf.overleaf_repo_directory)
gigaleaf = None
gigaleaf = Gigaleaf()
assert Path(Gigantum.get_overleaf_root_directory(), 'project',
'gigantum', 'metadata', 'fig1_png.json').is_file() is False
assert Path(Gigantum.get_overleaf_root_directory(), 'project',
'gigantum', 'data', 'fig1.png').is_file() is False
def test_empty_sync(self, gigantum_project_fixture):
gigaleaf = Gigaleaf()
# should be a no-op and not error
gigaleaf.sync()