def testListCLI(self):
"""
Test that we can list clis, get help for each, and get the xml spec for
each.
"""
from girder.plugins.slicer_cli_web import rest_slicer_cli
from girder.api.rest import Resource
restResource = Resource()
cli_args = ('--list_cli', )
cli_list = self._runTest(cli_args, contains=['"NucleiDetection"'])
cli_list = json.loads(cli_list)
self.assertIn('NucleiDetection', cli_list)
for cli in cli_list:
cli_args = (cli, '--help')
# Each cli's help must mention usage, its own name, and that you
# can output xml
self._runTest(cli_args, contains=['usage:', cli, '--xml'])
cli_args = (cli, '--xml')
# The xml output needs to have a tile and an executable tag
xml = self._runTest(cli_args,
contains=[
'<executable>', '<title>', '</executable>',
'</title>'
])
if '<' in xml:
xml = xml[xml.index('<'):]
try:
rest_slicer_cli.genHandlerToRunDockerCLI(
'dockerimage', os.environ.get('CLI_CWD'), xml,
restResource)
except Exception:
sys.stderr.write('Failed in generating endpoints for %s' % cli)
raise
def load(self, info):
info['apiRoot'].configuration = Configuration()
# Twitter and orcid stuff
info['apiRoot'].user.route('GET', (':id', 'orcid'), get_orcid)
info['apiRoot'].user.route('POST', (':id', 'orcid'), set_orcid)
info['apiRoot'].user.route('GET', (':id', 'twitter'), get_twitter)
info['apiRoot'].user.route('POST', (':id', 'twitter'), set_twitter)
# Launch a taskflow with a single endpoint
info['apiRoot'].launch_taskflow = Resource()
info['apiRoot'].launch_taskflow.route('POST', ('launch', ),
launch_taskflow_endpoint)
def testRouteSystem(self):
# Test an empty route handler
emptyResource = Resource()
self.assertRaises(GirderException, emptyResource.handleRoute, 'GET',
(), {})
dummy = DummyResource()
# Bad route should give a useful exception.
exc = None
try:
dummy.handleRoute('GET', (), {})
except RestException as e:
exc = e.message
self.assertEqual(exc, 'No matching route for "GET "')
# Make sure route ordering is correct; literals before wildcard tokens
r = dummy.handleRoute('GET', ('literal1', 'foo'), {})
self.assertEqual(r, {'wc1': 'literal1', 'wc2': 'foo', 'params': {}})
r = dummy.handleRoute('GET', ('literal1', 'literal2'), {})
self.assertEqual(r, {'params': {}})
r = dummy.handleRoute('PATCH', ('guid', 'patchy'), {})
self.assertEqual(r, {'id': 'guid', 'params': {}})
# Add a new route with a new method
dummy.route('DUMMY', (':id', 'dummy'), dummy.handler)
r = dummy.handleRoute('DUMMY', ('guid', 'dummy'), {})
self.assertEqual(r, {'id': 'guid', 'params': {}})
# Test getting the route handler
self.assertRaises(Exception, dummy.getRouteHandler, 'FOO',
(':id', 'dummy'))
self.assertRaises(Exception, dummy.getRouteHandler, 'DUMMY',
(':id', 'foo'))
registeredHandler = dummy.getRouteHandler('DUMMY', (':id', 'dummy'))
# The handler method cannot be compared directly with `is`, but its name and behavior can be
# examined
self.assertEqual(registeredHandler.__name__, dummy.handler.__name__)
self.assertEqual(registeredHandler(foo=42), {'foo': 42})
# Now remove the route
dummy.removeRoute('DUMMY', (':id', 'dummy'))
self.assertRaises(RestException, dummy.handleRoute, 'DUMMY',
('guid', 'dummy'), {})