def _extract_pixel(self, mode):
if not self._pressed:
return
x, y = self._event_xdata, self._event_ydata
if x is None or y is None:
return None
xi = int(round(x))
yi = int(round(y))
indices = [None] * self.viewer.state.reference_data.ndim
indices[self.viewer.state.x_att.axis] = xi
indices[self.viewer.state.y_att.axis] = yi
self._line_x.set_data([x, x], [0, 1])
self._line_x.set_visible(True)
self._line_y.set_data([0, 1], [y, y])
self._line_y.set_visible(True)
self.viewer.axes.figure.canvas.draw()
if self._derived is None:
self._derived = IndexedData(self.viewer.state.reference_data,
indices)
self.viewer.session.data_collection.append(self._derived)
else:
try:
self._derived.indices = indices
except TypeError:
self.viewer.session.data_collection.remove(self._derived)
self._derived = IndexedData(self.viewer.state.reference_data,
indices)
self.viewer.session.data_collection.append(self._derived)
def test_numerical_values_changed(self):
# Here we slice two of the dimensions and then compare the results to a
# manually sliced dataset.
derived = IndexedData(self.data, (None, 2, None, 4, None))
data_collection = DataCollection([self.data, derived])
class CustomListener(HubListener):
def __init__(self, hub):
self.received = 0
hub.subscribe(self,
NumericalDataChangedMessage,
handler=self.receive_message)
def receive_message(self, message):
self.received += 1
listener = CustomListener(data_collection.hub)
assert listener.received == 0
derived.indices = (None, 3, None, 5, None)
assert listener.received == 1
derived.indices = (None, 3, None, 5, None)
assert listener.received == 1
def test_numerical_values_changed(self):
# Here we slice two of the dimensions and then compare the results to a
# manually sliced dataset.
derived = IndexedData(self.data, (None, 2, None, 4, None))
data_collection = DataCollection([self.data, derived])
class CustomListener(HubListener):
def __init__(self, hub):
self.received = 0
hub.subscribe(self, NumericalDataChangedMessage,
handler=self.receive_message)
def receive_message(self, message):
self.received += 1
listener = CustomListener(data_collection.hub)
assert listener.received == 0
derived.indices = (None, 3, None, 5, None)
assert listener.received == 1
derived.indices = (None, 3, None, 5, None)
assert listener.received == 1
def test_invalid_indices_changed(self):
derived = IndexedData(self.data, (None, 2, None, 4, None))
with pytest.raises(TypeError) as exc:
derived.indices = (2, None, 4, None, 5)
assert exc.value.args[0] == "Can't change where the ``None`` values are in indices"
with pytest.raises(ValueError) as exc:
derived.indices = (2, None, 4, None)
assert exc.value.args[0] == "The 'indices' tuple should have length 5"
def test_invalid_indices_changed(self):
derived = IndexedData(self.data, (None, 2, None, 4, None))
with pytest.raises(TypeError) as exc:
derived.indices = (2, None, 4, None, 5)
assert exc.value.args[
0] == "Can't change where the ``None`` values are in indices"
with pytest.raises(ValueError) as exc:
derived.indices = (2, None, 4, None)
assert exc.value.args[0] == "The 'indices' tuple should have length 5"
def test_indexed(self):
# Here we slice two of the dimensions and then compare the results to a
# manually sliced dataset.
derived = IndexedData(self.data, (None, 2, None, 4, None))
manual = Data()
manual.add_component(self.data[self.x_id][:, 2, :, 4, :], label=self.x_id)
manual.add_component(self.data[self.y_id][:, 2, :, 4, :], label=self.y_id)
assert derived.label == 'Test data[:,2,:,4,:]'
assert derived.shape == manual.shape
assert [str(c) for c in derived.main_components] == [str(c) for c in manual.main_components]
assert derived.get_kind(self.x_id) == manual.get_kind(self.x_id)
for view in [None, (1, slice(None), slice(1, 4))]:
assert_equal(derived.get_data(self.x_id, view=view),
manual.get_data(self.x_id, view=view))
assert_equal(derived.get_mask(self.subset_state, view=view),
manual.get_mask(self.subset_state, view=view))
bounds = [2, (-5, 5, 10), (-3, 3, 10)]
assert_equal(derived.compute_fixed_resolution_buffer(bounds=bounds, target_cid=self.x_id),
manual.compute_fixed_resolution_buffer(bounds=bounds, target_cid=self.x_id))
assert_equal(derived.compute_statistic('mean', self.x_id),
manual.compute_statistic('mean', self.x_id))
assert_equal(derived.compute_statistic('mean', self.x_id, axis=2),
manual.compute_statistic('mean', self.x_id, axis=2))
assert_equal(derived.compute_statistic('mean', self.x_id, subset_state=self.subset_state),
manual.compute_statistic('mean', self.x_id, subset_state=self.subset_state))
assert_equal(derived.compute_histogram([self.x_id], range=[(0, 1000)], bins=[30]),
manual.compute_histogram([self.x_id], range=[(0, 1000)], bins=[30]))
assert_equal(derived.compute_histogram([self.x_id], range=[(0, 1000)], bins=[30], subset_state=self.subset_state),
manual.compute_histogram([self.x_id], range=[(0, 1000)], bins=[30], subset_state=self.subset_state))
def test_identity(self):
# In this test, we don't actually slice any dimensions
derived = IndexedData(self.data, (None,) * 5)
assert derived.label == 'Test data[:,:,:,:,:]'
assert derived.shape == self.data.shape
assert [str(c) for c in derived.main_components] == [str(c) for c in self.data.main_components]
assert derived.get_kind(self.x_id) == self.data.get_kind(self.x_id)
for view in [None, (1, slice(None), slice(None), slice(1, 4), slice(0, 7, 2))]:
assert_equal(derived.get_data(self.x_id, view=view),
self.data.get_data(self.x_id, view=view))
assert_equal(derived.get_mask(self.subset_state, view=view),
self.data.get_mask(self.subset_state, view=view))
bounds = [2, (-5, 5, 10), 3, 4, (-3, 3, 10)]
assert_equal(derived.compute_fixed_resolution_buffer(bounds=bounds, target_cid=self.x_id),
self.data.compute_fixed_resolution_buffer(bounds=bounds, target_cid=self.x_id))
assert_equal(derived.compute_statistic('mean', self.x_id),
self.data.compute_statistic('mean', self.x_id))
assert_equal(derived.compute_statistic('mean', self.x_id, axis=2),
self.data.compute_statistic('mean', self.x_id, axis=2))
assert_equal(derived.compute_statistic('mean', self.x_id, subset_state=self.subset_state),
self.data.compute_statistic('mean', self.x_id, subset_state=self.subset_state))
assert_equal(derived.compute_histogram([self.x_id], range=[(0, 1000)], bins=[30]),
self.data.compute_histogram([self.x_id], range=[(0, 1000)], bins=[30]))
assert_equal(derived.compute_histogram([self.x_id], range=[(0, 1000)], bins=[30], subset_state=self.subset_state),
self.data.compute_histogram([self.x_id], range=[(0, 1000)], bins=[30], subset_state=self.subset_state))
def test_indexed_data(capsys):
# Make sure that the image viewer works properly with IndexedData objects
data_4d = Data(label='hypercube_wcs',
x=np.random.random((3, 5, 4, 3)),
coords=WCS(naxis=4))
data_2d = IndexedData(data_4d, (2, None, 3, None))
application = GlueApplication()
session = application.session
hub = session.hub
data_collection = session.data_collection
data_collection.append(data_4d)
data_collection.append(data_2d)
viewer = application.new_data_viewer(ImageViewer)
viewer.add_data(data_2d)
assert viewer.state.x_att is data_2d.pixel_component_ids[1]
assert viewer.state.y_att is data_2d.pixel_component_ids[0]
assert viewer.state.x_att_world is data_2d.world_component_ids[1]
assert viewer.state.y_att_world is data_2d.world_component_ids[0]
process_events()
application.close()
# Some exceptions used to happen during callbacks, and these show up
# in stderr but don't interrupt the code, so we make sure here that
# nothing was printed to stdout nor stderr.
out, err = capsys.readouterr()
assert out.strip() == ""
assert err.strip() == ""
def test_world_component_ids(self):
derived = IndexedData(self.data, (None, 2, None, 4, None))
assert derived.world_component_ids == []
derived_with_coords = IndexedData(self.data_with_coords,
(None, 2, None, 4, None))
assert_equal(
derived_with_coords.get_data(
derived_with_coords.world_component_ids[0]),
self.data_with_coords.get_data(
self.data_with_coords.world_component_ids[0])[:, 2, :, 4, :])
assert_equal(
derived_with_coords.get_data(
derived_with_coords.world_component_ids[1]),
self.data_with_coords.get_data(
self.data_with_coords.world_component_ids[2])[:, 2, :, 4, :])
assert_equal(
derived_with_coords.get_data(
derived_with_coords.world_component_ids[2]),
self.data_with_coords.get_data(
self.data_with_coords.world_component_ids[4])[:, 2, :, 4, :])
def test_indexed(self):
# Here we slice two of the dimensions and then compare the results to a
# manually sliced dataset.
derived = IndexedData(self.data, (None, 2, None, 4, None))
manual = Data()
manual.add_component(self.data[self.x_id][:, 2, :, 4, :],
label=self.x_id)
manual.add_component(self.data[self.y_id][:, 2, :, 4, :],
label=self.y_id)
assert derived.label == 'Test data[:,2,:,4,:]'
assert derived.shape == manual.shape
assert [str(c) for c in derived.main_components
] == [str(c) for c in manual.main_components]
assert derived.get_kind(self.x_id) == manual.get_kind(self.x_id)
for view in [None, (1, slice(None), slice(1, 4))]:
assert_equal(derived.get_data(self.x_id, view=view),
manual.get_data(self.x_id, view=view))
assert_equal(derived.get_mask(self.subset_state, view=view),
manual.get_mask(self.subset_state, view=view))
bounds = [2, (-5, 5, 10), (-3, 3, 10)]
assert_equal(
derived.compute_fixed_resolution_buffer(bounds=bounds,
target_cid=self.x_id),
manual.compute_fixed_resolution_buffer(bounds=bounds,
target_cid=self.x_id))
assert_equal(derived.compute_statistic('mean', self.x_id),
manual.compute_statistic('mean', self.x_id))
assert_equal(derived.compute_statistic('mean', self.x_id, axis=2),
manual.compute_statistic('mean', self.x_id, axis=2))
assert_equal(
derived.compute_statistic('mean',
self.x_id,
subset_state=self.subset_state),
manual.compute_statistic('mean',
self.x_id,
subset_state=self.subset_state))
assert_equal(
derived.compute_histogram([self.x_id],
range=[(0, 1000)],
bins=[30]),
manual.compute_histogram([self.x_id], range=[(0, 1000)],
bins=[30]))
assert_equal(
derived.compute_histogram([self.x_id],
range=[(0, 1000)],
bins=[30],
subset_state=self.subset_state),
manual.compute_histogram([self.x_id],
range=[(0, 1000)],
bins=[30],
subset_state=self.subset_state))
def test_identity(self):
# In this test, we don't actually slice any dimensions
derived = IndexedData(self.data, (None, ) * 5)
assert derived.label == 'Test data[:,:,:,:,:]'
assert derived.shape == self.data.shape
assert [str(c) for c in derived.main_components
] == [str(c) for c in self.data.main_components]
assert derived.get_kind(self.x_id) == self.data.get_kind(self.x_id)
for view in [
None, (1, slice(None), slice(None), slice(1,
4), slice(0, 7, 2))
]:
assert_equal(derived.get_data(self.x_id, view=view),
self.data.get_data(self.x_id, view=view))
assert_equal(derived.get_mask(self.subset_state, view=view),
self.data.get_mask(self.subset_state, view=view))
bounds = [2, (-5, 5, 10), 3, 4, (-3, 3, 10)]
assert_equal(
derived.compute_fixed_resolution_buffer(bounds=bounds,
target_cid=self.x_id),
self.data.compute_fixed_resolution_buffer(bounds=bounds,
target_cid=self.x_id))
assert_equal(derived.compute_statistic('mean', self.x_id),
self.data.compute_statistic('mean', self.x_id))
assert_equal(derived.compute_statistic('mean', self.x_id, axis=2),
self.data.compute_statistic('mean', self.x_id, axis=2))
assert_equal(
derived.compute_statistic('mean',
self.x_id,
subset_state=self.subset_state),
self.data.compute_statistic('mean',
self.x_id,
subset_state=self.subset_state))
assert_equal(
derived.compute_histogram([self.x_id],
range=[(0, 1000)],
bins=[30]),
self.data.compute_histogram([self.x_id],
range=[(0, 1000)],
bins=[30]))
assert_equal(
derived.compute_histogram([self.x_id],
range=[(0, 1000)],
bins=[30],
subset_state=self.subset_state),
self.data.compute_histogram([self.x_id],
range=[(0, 1000)],
bins=[30],
subset_state=self.subset_state))
def test_pixel_component_ids(self):
derived = IndexedData(self.data, (None, 2, None, 4, None))
assert_equal(
derived.get_data(derived.pixel_component_ids[1]),
self.data.get_data(self.data.pixel_component_ids[2])[:, 2, :,
4, :])
def test_invalid_indices_init(self):
with pytest.raises(ValueError) as exc:
derived = IndexedData(self.data, (2, None, 4, None))
assert exc.value.args[0] == "The 'indices' tuple should have length 5"
def test_pixel_component_ids(self):
derived = IndexedData(self.data, (None, 2, None, 4, None))
assert_equal(derived.get_data(derived.pixel_component_ids[1]),
self.data.get_data(self.data.pixel_component_ids[2])[:, 2, :, 4, :])