Python get 예제들

예제 #1

파일: uniprot.py 프로젝트: mobiusklein/glycan_profiling

 def task_handler(self, accession_number):
     accession = get_uniprot_accession(accession_number)
     if accession is None:
         accession = accession_number
     protein_data = uniprot.get(accession)
     self.output_queue.put((accession_number, protein_data))
     return protein_data

예제 #2

파일: uniprot.py 프로젝트: mstim/glycresoft

 def task_handler(self, accession_number):
     accession = get_uniprot_accession(accession_number)
     if accession is None:
         accession = accession_number
     protein_data = uniprot.get(accession)
     self.output_queue.put((accession_number, protein_data))
     return protein_data

예제 #3

파일: tools.py 프로젝트: mobiusklein/glycan_profiling

def has_known_glycosylation(accession):
    try:
        prot = uniprot.get(accession)
        if "Glycoprotein" in prot.keywords:
            return True
        else:
            # for feature in prot.features:
            #     if isinstance(feature, uniprot.GlycosylationSite):
            #         return True
            pass
        return False
    except Exception:
        return False

예제 #4

def has_known_glycosylation(accession):
    try:
        prot = uniprot.get(accession)
        if "Glycoprotein" in prot.keywords:
            return True
        else:
            # for feature in prot.features:
            #     if isinstance(feature, uniprot.GlycosylationSite):
            #         return True
            pass
        return False
    except Exception:
        return False

예제 #5

파일: test_uniprot.py 프로젝트: BostonUniversityCBMS/glycopeptidepy

 def test_get(self):
     prot = uniprot.get("P13611")
     self.assertIn("P13611", prot.accessions)