def Run(self, args):
"""Run 'operations list'.
Args:
args: argparse.Namespace, The arguments that this command was invoked
with.
Returns:
The list of operations for this project.
"""
both = not args.filter and not args.where
outputs = []
if both or args.filter:
apitools_client = genomics_util.GetGenomicsClient('v2alpha1')
genomics_messages = genomics_util.GetGenomicsMessages('v2alpha1')
request = genomics_messages.GenomicsProjectsOperationsListRequest(
name='projects/%s/operations' %
(genomics_util.GetProjectId(), ),
filter=args.filter)
outputs.append(
list_pager.YieldFromList(
apitools_client.projects_operations,
request,
limit=args.limit,
batch_size_attribute='pageSize',
batch_size=args.
limit, # Use limit if any, else server default.
field='operations'))
if both or args.where:
apitools_client = genomics_util.GetGenomicsClient()
genomics_messages = genomics_util.GetGenomicsMessages()
if args.where:
args.where += ' AND '
args.where += 'projectId=%s' % genomics_util.GetProjectId()
request = genomics_messages.GenomicsOperationsListRequest(
name='operations', filter=args.where)
outputs.append(
list_pager.YieldFromList(
apitools_client.operations,
request,
limit=args.limit,
batch_size_attribute='pageSize',
batch_size=args.
limit, # Use limit if any, else server default.
field='operations'))
return chain.from_iterable(outputs)
def Run(self, args):
"""This is what gets called when the user runs this command.
Args:
args: an argparse namespace, All the arguments that were provided to this
command invocation.
Raises:
HttpException: An http error response was received while executing api
request.
Returns:
None
"""
apitools_client = genomics_util.GetGenomicsClient()
genomics_messages = genomics_util.GetGenomicsMessages()
# Look it up first so that we can display the name
existing_rgs = apitools_client.readgroupsets.Get(
genomics_messages.GenomicsReadgroupsetsGetRequest(readGroupSetId=args.id))
prompt_message = (
'Deleting read group set {0} ({1}) will delete all objects in the read '
'group set.').format(args.id, existing_rgs.name)
if not console_io.PromptContinue(message=prompt_message):
raise GenomicsError('Deletion aborted by user.')
apitools_client.readgroupsets.Delete(
genomics_messages.GenomicsReadgroupsetsDeleteRequest(
readGroupSetId=str(args.id)))
log.DeletedResource('{0} ({1})'.format(args.id,
existing_rgs.name))
def Run(self, args):
"""This is what gets called when the user runs this command.
Args:
args: an argparse namespace, All the arguments that were provided to this
command invocation.
Raises:
HttpException: An http error response was received while executing api
request.
Returns:
None
"""
# Look it up first so that we can display the name
existing_ds = genomics_util.GetDataset(args.id)
prompt_message = (
'Deleting dataset {0} ({1}) will delete all objects in the dataset. '
'Deleted datasets can be recovered with the "restore" command '
'up to one week after the deletion occurs.').format(
existing_ds.id, existing_ds.name)
if not console_io.PromptContinue(message=prompt_message):
raise GenomicsError('Deletion aborted by user.')
apitools_client = genomics_util.GetGenomicsClient()
genomics_messages = genomics_util.GetGenomicsMessages()
dataset = genomics_messages.GenomicsDatasetsDeleteRequest(
datasetId=str(args.id), )
apitools_client.datasets.Delete(dataset)
log.DeletedResource('{0} ({1})'.format(existing_ds.id,
existing_ds.name))
def Run(self, args):
"""This is what gets called when the user runs this command.
Args:
args: an argparse namespace, All the arguments that were provided to this
command invocation.
Returns:
an Operation message which tracks the asynchronous export
"""
apitools_client = genomics_util.GetGenomicsClient()
genomics_messages = genomics_util.GetGenomicsMessages()
try:
return apitools_client.readgroupsets.Export(
genomics_messages.GenomicsReadgroupsetsExportRequest(
readGroupSetId=args.read_group_set_id,
exportReadGroupSetRequest=genomics_messages.
ExportReadGroupSetRequest(
projectId=genomics_util.GetProjectId(),
exportUri=args.export_uri,
referenceNames=args.reference_names)))
except apitools_exceptions.HttpError as error:
# Map our error messages (JSON API camelCased) back into flag names.
msg = (
exceptions.HttpException(error).payload.status_message.replace(
'exportUri',
'--export-uri').replace('referenceNames',
'--reference-names'))
core_exceptions.reraise(exceptions.HttpException(msg))
def Run(self, args):
"""This is what gets called when the user runs this command.
Args:
args: an argparse namespace, All the arguments that were provided to this
command invocation.
Raises:
HttpException: An http error response was received while executing api
request.
Returns:
None
"""
apitools_client = genomics_util.GetGenomicsClient()
genomics_messages = genomics_util.GetGenomicsMessages()
variantset = genomics_messages.VariantSet(
datasetId=args.dataset_id,
referenceSetId=args.reference_set_id,
name=args.name,
description=args.description)
result = apitools_client.variantsets.Create(variantset)
log.CreatedResource('{0}, id: {1}'.format(result.name, result.id),
kind='variant set',
details='belonging to dataset [id: {0}]'.format(
result.datasetId))
return result
def Run(self, args):
"""This is what gets called when the user runs this command.
Args:
args: an argparse namespace, All the arguments that were provided to this
command invocation.
Raises:
HttpException: An http error response was received while executing api
request.
Returns:
None
"""
apitools_client = genomics_util.GetGenomicsClient()
genomics_messages = genomics_util.GetGenomicsMessages()
request = genomics_messages.GenomicsCallsetsPatchRequest(
callSet=genomics_messages.CallSet(
id=args.id,
name=args.name,
# Can't construct a callset without the variant id set, but
# actually setting the variant id would not do anything, so
# use a dummy value. See b/22818510.
variantSetIds=['123'],
),
callSetId=args.id,
)
result = apitools_client.callsets.Patch(request)
log.UpdatedResource('{0}, id: {1}'.format(result.name, result.id),
kind='call set')
return result
def Run(self, args):
"""This is what gets called when the user runs this command.
Args:
args: an argparse namespace, All the arguments that were provided to this
command invocation.
Raises:
HttpException: An http error response was received while executing api
request.
Returns:
an ExportVariantSetResponse
"""
apitools_client = genomics_util.GetGenomicsClient()
genomics_messages = genomics_util.GetGenomicsMessages()
enum = genomics_messages.ExportVariantSetRequest.FormatValueValuesEnum
call_set_ids = args.call_set_ids if args.call_set_ids else []
project_id = args.bigquery_project
if not project_id:
project_id = genomics_util.GetProjectId()
request = genomics_messages.GenomicsVariantsetsExportRequest(
variantSetId=args.id,
exportVariantSetRequest=genomics_messages.ExportVariantSetRequest(
callSetIds=call_set_ids,
projectId=project_id,
format=enum.FORMAT_BIGQUERY,
bigqueryDataset=args.bigquery_dataset,
bigqueryTable=args.table))
return apitools_client.variantsets.Export(request)
def Run(self, args):
"""This is what gets called when the user runs this command.
Args:
args: an argparse namespace, All the arguments that were provided to this
command invocation.
Raises:
HttpException: An http error response was received while executing api
request.
Returns:
None
"""
prompt_message = ('Restoring dataset {0} will restore all objects in '
'the dataset.').format(args.id)
if not console_io.PromptContinue(message=prompt_message):
raise GenomicsError('Restore aborted by user.')
apitools_client = genomics_util.GetGenomicsClient()
genomics_messages = genomics_util.GetGenomicsMessages()
dataset = genomics_messages.GenomicsDatasetsUndeleteRequest(
datasetId=args.id)
result = apitools_client.datasets.Undelete(dataset)
log.RestoredResource('{0}, id: {1}'.format(result.name, result.id),
kind='dataset')
return result
def Run(self, args):
"""This is what gets called when the user runs this command.
Args:
args: an argparse namespace, All the arguments that were provided to this
command invocation.
Raises:
HttpException: An http error response was received while executing api
request.
Returns:
None
"""
apitools_client = genomics_util.GetGenomicsClient()
genomics_messages = genomics_util.GetGenomicsMessages()
name = args.name
if not name.startswith(_OPERATIONS_PREFIX):
name = _OPERATIONS_PREFIX + name
# Look up the operation so we can display it in the confirmation prompt
op = apitools_client.operations.Get(
genomics_messages.GenomicsOperationsGetRequest(name=name))
operation_string = StringIO()
print_format = display.Displayer(self, args).GetFormat()
resource_printer.Print(op, print_format, out=operation_string)
if not console_io.PromptContinue(
message='%s\n%s' %
(operation_string.getvalue(), 'This operation will be canceled')):
raise GenomicsError('Cancel aborted by user.')
apitools_client.operations.Cancel(
genomics_messages.GenomicsOperationsCancelRequest(name=name))
log.status.write('Canceled [{0}].\n'.format(name))
def Run(self, args):
"""Run 'operations list'.
Args:
args: argparse.Namespace, The arguments that this command was invoked
with.
Returns:
The list of operations for this project.
"""
apitools_client = genomics_util.GetGenomicsClient('v2alpha1')
genomics_messages = genomics_util.GetGenomicsMessages('v2alpha1')
request_filter = None
if args.filter:
rewriter = filter_rewrite.OperationsBackend()
args.filter, request_filter = rewriter.Rewrite(args.filter)
log.info('client_filter=%r server_filter=%r', args.filter, request_filter)
request = genomics_messages.GenomicsProjectsOperationsListRequest(
name='projects/%s/operations' % (genomics_util.GetProjectId(),),
filter=request_filter)
return list_pager.YieldFromList(
apitools_client.projects_operations,
request,
limit=args.limit,
batch_size_attribute='pageSize',
batch_size=args.limit, # Use limit if any, else server default.
field='operations')
def Run(self, args):
"""This is what gets called when the user runs this command.
Args:
args: an argparse namespace, All the arguments that were provided to this
command invocation.
Returns:
A list of reads that meet the search criteria.
"""
apitools_client = genomics_util.GetGenomicsClient()
messages = genomics_util.GetGenomicsMessages()
fields = genomics_util.GetQueryFields(self.GetReferencedKeyNames(args),
'alignments')
if fields:
global_params = messages.StandardQueryParameters(fields=fields)
else:
global_params = None
return list_pager.YieldFromList(
apitools_client.reads,
messages.SearchReadsRequest(
readGroupSetIds=[args.read_group_set_id],
referenceName=args.reference_name,
start=args.start,
end=args.end),
global_params=global_params,
limit=args.limit,
method='Search',
batch_size_attribute='pageSize',
batch_size=args.page_size,
field='alignments')
def Run(self, args):
"""Run 'datasets list'.
Args:
args: argparse.Namespace, The arguments that this command was invoked
with.
Yields:
The list of datasets for this project.
Raises:
HttpException: An http error response was received while executing api
request.
"""
apitools_client = genomics_util.GetGenomicsClient()
request = genomics_util.GetGenomicsMessages(
).GenomicsDatasetsListRequest(projectId=genomics_util.GetProjectId())
try:
for resource in list_pager.YieldFromList(
apitools_client.datasets,
request,
limit=args.limit,
batch_size_attribute='pageSize',
batch_size=args.
limit, # Use limit if any, else server default.
field='datasets'):
yield resource
except apitools_exceptions.HttpError as error:
raise exceptions.HttpException(
genomics_util.GetErrorMessage(error))
def Run(self, args):
"""Run 'variantsets list'.
Args:
args: argparse.Namespace, The arguments that this command was invoked
with.
Yields:
The list of variant sets for this dataset.
Raises:
HttpException: An http error response was received while executing api
request.
"""
apitools_client = genomics_util.GetGenomicsClient()
req_class = genomics_util.GetGenomicsMessages().SearchVariantSetsRequest
request = req_class(datasetIds=[args.dataset_id])
try:
for resource in list_pager.YieldFromList(
apitools_client.variantsets,
request,
method='Search',
limit=args.limit,
batch_size_attribute='pageSize',
batch_size=args.limit, # Use limit if any, else server default.
field='variantSets'):
yield resource
except apitools_exceptions.HttpError as error:
raise exceptions.HttpException(genomics_util.GetErrorMessage(error))
def Run(self, args):
"""This is what gets called when the user runs this command.
Args:
args: an argparse namespace, All the arguments that were provided to this
command invocation.
Raises:
HttpException: An http error response was received while executing api
request.
Returns:
None
"""
apitools_client = genomics_util.GetGenomicsClient()
genomics_messages = genomics_util.GetGenomicsMessages()
dataset = genomics_messages.Dataset(
name=args.name,
projectId=genomics_util.GetProjectId(),
)
result = apitools_client.datasets.Create(dataset)
log.CreatedResource('{0}, id: {1}'.format(result.name, result.id),
kind='dataset')
return result
def Run(self, args):
"""Run 'operations list'.
Args:
args: argparse.Namespace, The arguments that this command was invoked
with.
Returns:
The list of operations for this project.
"""
apitools_client = genomics_util.GetGenomicsClient()
genomics_messages = genomics_util.GetGenomicsMessages()
if args.where:
args.where += ' AND '
args.where += 'projectId=%s' % genomics_util.GetProjectId()
request = genomics_messages.GenomicsOperationsListRequest(
name='operations', filter=args.where)
return list_pager.YieldFromList(
apitools_client.operations,
request,
limit=args.limit,
batch_size_attribute='pageSize',
batch_size=args.limit, # Use limit if any, else server default.
field='operations')
def Run(self, args):
"""Run 'references list'.
Args:
args: argparse.Namespace, The arguments that this command was invoked
with.
Yields:
The list of matching references.
Raises:
HttpException: An http error response was received while executing api
request.
"""
apitools_client = genomics_util.GetGenomicsClient()
req_class = genomics_util.GetGenomicsMessages().SearchReferencesRequest
request = req_class(md5checksums=args.md5checksums,
accessions=args.accessions,
referenceSetId=args.reference_set_id)
for resource in list_pager.YieldFromList(
apitools_client.references,
request,
method='Search',
limit=args.limit,
batch_size_attribute='pageSize',
batch_size=args.
limit, # Use limit if any, else server default.
field='references'):
yield resource
def Run(self, args):
"""This is what gets called when the user runs this command.
Args:
args: an argparse namespace, All the arguments that were provided to this
command invocation.
Raises:
HttpException: An http error response was received while executing api
request.
Returns:
None
"""
op = None
apitools_client = genomics_util.GetGenomicsClient('v2alpha1')
genomics_messages = genomics_util.GetGenomicsMessages('v2alpha1')
name, v2 = genomics_util.CanonicalizeOperationName(args.name)
if v2:
op = apitools_client.projects_operations.Get(
genomics_messages.GenomicsProjectsOperationsGetRequest(
name=name))
else:
apitools_client = genomics_util.GetGenomicsClient()
genomics_messages = genomics_util.GetGenomicsMessages()
op = apitools_client.operations.Get(
genomics_messages.GenomicsOperationsGetRequest(name=name))
operation_string = io.StringIO()
print_format = display.Displayer(self, args).GetFormat()
resource_printer.Print(op, print_format, out=operation_string)
if not console_io.PromptContinue(
message='%s\n%s' %
(operation_string.getvalue(), 'This operation will be canceled')):
raise GenomicsError('Cancel aborted by user.')
if v2:
apitools_client.projects_operations.Cancel(
genomics_messages.GenomicsProjectsOperationsCancelRequest(
name=name))
else:
apitools_client.operations.Cancel(
genomics_messages.GenomicsOperationsCancelRequest(name=name))
log.status.write('Canceled [{0}].\n'.format(name))
def Run(self, args):
apitools_client = genomics_util.GetGenomicsClient()
messages = genomics_util.GetGenomicsMessages()
dataset_resource = resources.REGISTRY.Parse(
args.id, collection='genomics.datasets')
policy_request = messages.GenomicsDatasetsGetIamPolicyRequest(
resource='datasets/{0}'.format(dataset_resource.Name()),
getIamPolicyRequest=messages.GetIamPolicyRequest(),
)
return apitools_client.datasets.GetIamPolicy(policy_request)
def Run(self, args):
"""This is what gets called when the user runs this command.
Args:
args: an argparse namespace, All the arguments that were provided to this
command invocation.
Returns:
a Operation message
"""
name, v2 = genomics_util.CanonicalizeOperationName(args.name)
if v2:
apitools_client = genomics_util.GetGenomicsClient('v2alpha1')
genomics_messages = genomics_util.GetGenomicsMessages('v2alpha1')
return apitools_client.projects_operations.Get(
genomics_messages.GenomicsProjectsOperationsGetRequest(
name=name))
apitools_client = genomics_util.GetGenomicsClient()
genomics_messages = genomics_util.GetGenomicsMessages()
return apitools_client.operations.Get(
genomics_messages.GenomicsOperationsGetRequest(name=name))
def Run(self, args):
"""This is what gets called when the user runs this command.
Args:
args: an argparse namespace, All the arguments that were provided to this
command invocation.
Returns:
an Operation message which tracks the asynchronous import
"""
apitools_client = genomics_util.GetGenomicsClient()
genomics_messages = genomics_util.GetGenomicsMessages()
if not args.source_uris:
raise GenomicsError(
'at least one value is required for --source-uris')
partition_enum = (genomics_messages.ImportReadGroupSetsRequest.
PartitionStrategyValueValuesEnum)
partition_strat = None
if args.partition_strategy:
if args.partition_strategy not in partition_enum.to_dict():
raise GenomicsError(
'--partition-strategy must be one of {0}; received: {1}'.
format(sorted(partition_enum.names()),
args.partition_strategy))
partition_strat = partition_enum.lookup_by_name(
args.partition_strategy)
try:
return apitools_client.readgroupsets.Import(
genomics_messages.ImportReadGroupSetsRequest(
datasetId=args.dataset_id,
sourceUris=args.source_uris,
referenceSetId=args.reference_set_id,
partitionStrategy=partition_strat,
))
except apitools_exceptions.HttpError as error:
# Map our error messages (JSON API camelCased) back into flag names.
msg = (
exceptions.HttpException(error).payload.status_message.replace(
'datasetId', '--dataset-id').replace(
'partitionStrategy', '--partition-strategy').replace(
'sourceUris',
'--source-uris').replace('referenceSetId',
'--reference-set-id'))
unused_type, unused_value, traceback = sys.exc_info()
raise exceptions.HttpException, msg, traceback
def Run(self, args):
"""This is what gets called when the user runs this command.
Args:
args: an argparse namespace, All the arguments that were provided to this
command invocation.
Returns:
a Reference message
"""
apitools_client = genomics_util.GetGenomicsClient()
genomics_messages = genomics_util.GetGenomicsMessages()
request = genomics_messages.GenomicsReferencesGetRequest(
referenceId=args.id, )
return apitools_client.references.Get(request)
def Run(self, args):
apitools_client = genomics_util.GetGenomicsClient()
messages = genomics_util.GetGenomicsMessages()
dataset_resource = resources.REGISTRY.Parse(
args.id, collection='genomics.datasets')
policy = iam_util.ParsePolicyFile(args.policy_file, messages.Policy)
policy_request = messages.GenomicsDatasetsSetIamPolicyRequest(
resource='datasets/{0}'.format(dataset_resource.Name()),
setIamPolicyRequest=messages.SetIamPolicyRequest(policy=policy),
)
result = apitools_client.datasets.SetIamPolicy(policy_request)
iam_util.LogSetIamPolicy(dataset_resource.Name(), 'dataset')
return result
def Run(self, args):
"""This is what gets called when the user runs this command.
Args:
args: an argparse namespace, All the arguments that were provided to this
command invocation.
Yields:
A list of variants that meet the search criteria.
"""
apitools_client = genomics_util.GetGenomicsClient()
genomics_messages = genomics_util.GetGenomicsMessages()
fields = genomics_util.GetQueryFields(self.GetReferencedKeyNames(args),
'variants')
if fields:
global_params = genomics_messages.StandardQueryParameters(
fields=fields)
else:
global_params = None
variant_set_id = [args.variant_set_id] if args.variant_set_id else []
try:
for resource in list_pager.YieldFromList(
apitools_client.variants,
genomics_messages.SearchVariantsRequest(
variantSetIds=variant_set_id,
callSetIds=args.call_set_ids,
referenceName=args.reference_name,
start=args.start,
end=args.end,
maxCalls=args.limit_calls),
global_params=global_params,
limit=args.limit,
method='Search',
batch_size_attribute='pageSize',
batch_size=args.page_size,
field='variants'):
yield resource
except apitools_exceptions.HttpError as error:
msg = (
exceptions.HttpException(error).payload.status_message.replace(
'variantSetIds', '--variant-set-id').replace(
'callSetIds', '--call-set-ids').replace(
'referenceName', '--reference-name').replace(
'start', '--start').replace('end', '--end'))
raise exceptions.HttpException(msg)
def Run(self, args):
"""This is what gets called when the user runs this command.
Args:
args: an argparse namespace, All the arguments that were provided to this
command invocation.
Returns:
a Variant message
"""
apitools_client = genomics_util.GetGenomicsClient()
genomics_messages = genomics_util.GetGenomicsMessages()
variant = genomics_messages.Variant(names=args.names, )
request = genomics_messages.GenomicsVariantsPatchRequest(
updateMask='names', variant=variant, variantId=args.id)
return apitools_client.variants.Patch(request)
def Run(self, args):
"""This is what gets called when the user runs this command.
Args:
args: an argparse namespace, All the arguments that were provided to this
command invocation.
Returns:
a Operation message
"""
apitools_client = genomics_util.GetGenomicsClient()
genomics_messages = genomics_util.GetGenomicsMessages()
name = args.name
if not name.startswith(_OPERATIONS_PREFIX):
name = _OPERATIONS_PREFIX + name
return apitools_client.operations.Get(
genomics_messages.GenomicsOperationsGetRequest(name=name))
def Run(self, args):
"""This is what gets called when the user runs this command.
Args:
args: an argparse namespace, All the arguments that were provided to this
command invocation.
Returns:
The ID of the variant that was deleted.
"""
vid = args.id
apitools_client = genomics_util.GetGenomicsClient()
genomics_messages = genomics_util.GetGenomicsMessages()
request = genomics_messages.GenomicsVariantsDeleteRequest(
variantId=vid, )
apitools_client.variants.Delete(request)
log.DeletedResource('variant {0}'.format(vid))
return vid
def Run(self, args):
"""This is what gets called when the user runs this command.
Args:
args: an argparse namespace, All the arguments that were provided to this
command invocation.
Raises:
HttpException: An http error response was received while executing api
request.
Returns:
None
"""
apitools_client = genomics_util.GetGenomicsClient()
genomics_messages = genomics_util.GetGenomicsMessages()
if not (args.name or args.reference_set_id):
raise GenomicsError(
'Must specify --name and/or --reference-set-id')
updated = genomics_messages.ReadGroupSet()
mask = []
# TODO(b/26871577): Consider using resource parser here
if args.name:
updated.name = args.name
mask.append('name')
if args.reference_set_id:
updated.referenceSetId = args.reference_set_id
mask.append('referenceSetId')
request = genomics_messages.GenomicsReadgroupsetsPatchRequest(
readGroupSet=updated,
readGroupSetId=str(args.id),
updateMask=','.join(mask))
result = apitools_client.readgroupsets.Patch(request)
name = str(result.id)
if result.name:
name += ', name: {0}'.format(result.name)
if result.referenceSetId:
name += ', referenceSetId: {0}'.format(result.referenceSetId)
log.UpdatedResource(name, kind='readgroupset')
return result
def Run(self, args):
"""Run 'datasets list'.
Args:
args: argparse.Namespace, The arguments that this command was invoked
with.
Returns:
The list of datasets for this project.
"""
apitools_client = genomics_util.GetGenomicsClient()
request = genomics_util.GetGenomicsMessages(
).GenomicsDatasetsListRequest(projectId=genomics_util.GetProjectId())
return list_pager.YieldFromList(
apitools_client.datasets,
request,
limit=args.limit,
batch_size_attribute='pageSize',
batch_size=args.limit, # Use limit if any, else server default.
field='datasets')
def Run(self, args):
"""This is what gets called when the user runs this command.
Args:
args: an argparse namespace, All the arguments that were provided to this
command invocation.
Raises:
HttpException: An http error response was received while executing api
request.
Returns:
a VariantSet whose id matches args.id.
"""
apitools_client = genomics_util.GetGenomicsClient()
genomics_messages = genomics_util.GetGenomicsMessages()
get_request = genomics_messages.GenomicsVariantsetsGetRequest(
variantSetId=args.id, )
return apitools_client.variantsets.Get(get_request)
def Run(self, args):
apitools_client = genomics_util.GetGenomicsClient()
messages = genomics_util.GetGenomicsMessages()
dataset_resource = resources.REGISTRY.Parse(
args.id, collection='genomics.datasets')
policy_request = messages.GenomicsDatasetsGetIamPolicyRequest(
resource='datasets/{0}'.format(dataset_resource.Name()),
getIamPolicyRequest=messages.GetIamPolicyRequest(),
)
policy = apitools_client.datasets.GetIamPolicy(policy_request)
iam_util.RemoveBindingFromIamPolicy(policy, args.member, args.role)
policy_request = messages.GenomicsDatasetsSetIamPolicyRequest(
resource='datasets/{0}'.format(dataset_resource.Name()),
setIamPolicyRequest=messages.SetIamPolicyRequest(policy=policy),
)
return apitools_client.datasets.SetIamPolicy(policy_request)
