def __init__(self,c,g):
#Blit.__init__(self,canvas=c,scale_factor=10,test_image=False)
self.parent = c
#c.root.add(self)
SugiyamaLayout.__init__(self,g)
self.route_edge = route_with_lines
self.xspace,self.yspace = median_wh([v.view for v in g.V()])
def test_001_Sugiyama(sample_G02):
gr = graph_core(*sample_G02)
for v in gr.V():
v.view = VertexViewer(10, 10)
sug = SugiyamaLayout(gr)
sug.init_all(roots=[gr.sV[0]], inverted_edges=[])
for _ in sug.draw_step():
for v, x in sug.grx.items():
print(x, v.view.xy)
def __init__(self, vertexes, edges):
#
# Just a reminder about naming conventions:
# +------------X
# |
# |
# |
# |
# Y
#
V = {v: Vertex(" {} ".format(v)) for v in vertexes}
# NOTE: reverting edges to correctly orientate the graph
E = [Edge(V[e], V[s]) for s, e in edges]
V = V.values()
g = Graph(V, E)
class VertexViewer(object):
h = 3 # top and bottom box edges + text
def __init__(self, name):
self.w = len(name) + 2 # right and left bottom edges + text
for v in V:
v.view = VertexViewer(v.data)
# NOTE: determine min box length to create the best layout
minw = min([v.view.w for v in V])
for e in E:
e.view = EdgeViewer()
sug = SugiyamaLayout(g.C[0])
gr = g.C[0]
r = list(filter(lambda x: len(x.e_in()) == 0, gr.sV))
sug.init_all(roots=r, optimize=True)
sug.yspace = VertexViewer.h
sug.xspace = minw
sug.route_edge = route_with_lines
sug.draw()
self.sug = sug
def run(self):
with SDHistoryUtils.UndoGroup("Auto-Format Layout"):
selected_nodes = uiMgr.getCurrentGraphSelection()
hierarchy = NodesHierarchy(ctx, selected_nodes)
vertexes = [Vertex(data) for data in range(len(hierarchy.nodes))]
nodesConnections = hierarchy.getEdges()
edges = [Edge(vertexes[vertex], vertexes[w]) for (vertex, w) in nodesConnections]
graph = SubstanceGraph(vertexes, edges)
for vertex in vertexes:
vertex.view = VertexView(hierarchy.nodes[vertex.data])
# For each separate graph
for subGraph in range(len(graph.C)):
center = graph.getSubgraphCenter(subGraph)
sug = SugiyamaLayout(graph.C[subGraph])
# Vertexes without input edges
roots = list(filter(lambda x: len(x.e_in()) == 0, graph.C[subGraph].sV))
sug.init_all(roots=roots)
sug.draw()
newCenter = graph.getSubgraphCenter(subGraph)
if len(selected_nodes) == 1:
# Offset everything to save the selected node initial position
rootPosition = hierarchy.nodes[roots[0].data].getPosition()
# Have to compensate the final root node offset
offset = float2(rootPosition[1] - roots[0].view.xy[0], -rootPosition[0] - roots[0].view.xy[1])
else:
offset = float2(center[0] - newCenter[0], center[1] - newCenter[1])
for i, vertex in enumerate(graph.C[subGraph].sV):
vertex.view.node.setPosition(float2(-vertex.view.xy[1] - offset[1], vertex.view.xy[0] + offset[0]))
def initView(self):
cfg = self.func.cfg
vertexs = {}
done = set()
for block in cfg.blocks:
if block in done:
continue
done.add(block)
startLockey = block.loc_key
endLockey = block.loc_key
blocks = [block]
while (block.lines[-1].name == 'CALL') and (len(cfg.predecessors(block.get_next())) == 1):
nextLockey = block.get_next()
if block.loc_key in cfg.successors(nextLockey):
break
block = cfg.loc_key_to_block(nextLockey)
blocks.append(block)
endLockey = block.loc_key
done.add(block)
vertex = Vertex(startLockey)
vertexs[startLockey] = vertex
vertex.view = AsmBlockView(startLockey, endLockey, blocks, self.func)
edges = []
for src in vertexs.values():
successLocKeys = cfg.successors(src.view.endLockey)
for key in successLocKeys:
vSrc = vertexs[src.view.lockey]
vDst = vertexs[key]
edge = Edge(vSrc, vDst)
edge.view = BasicEdge(vDst)
edges.append(edge)
vSrc.view.outBlocks.append(vDst.view)
vDst.view.inBlocks.append(vSrc.view)
self.graph = Graph(vertexs.values(), edges)
sugLayout = SugiyamaLayout(self.graph.C[0])
sugLayout.route_edge = route_with_lines
sugLayout.init_all()
sugLayout.draw()
for v in vertexs.values():
self.addBlock(v.view, v.view.xy[0] - (v.view.w / 2), v.view.xy[1] - (v.view.h / 2))
v.view.gotoAddress.connect(self.selectAddress)
for e in edges:
srcView = e.v[0].view
srcBlock = e.v[0].data
dstBlock = e.v[1].data
if len(srcView.outBlocks) == 1:
color = Qt.darkBlue
elif dstBlock == cfg.successors(srcBlock)[0]:
color = Qt.darkRed
else:
color = Qt.darkGreen
edge_view = e.view
edge_view.color = color
self.scene.addItem(edge_view)
def _build_sugiyama_layout(vertexes: Union[List, Dict, ValuesView],
edges: List) -> SugiyamaLayout:
#
# Just a reminder about naming conventions:
# +------------X
# |
# |
# |
# |
# Y
#
vertexes = {v: Vertex(f" {v} ") for v in vertexes}
# NOTE: reverting edges to correctly orientate the graph
edges = [Edge(vertexes[e], vertexes[s]) for s, e in edges]
vertexes = vertexes.values()
graph = Graph(vertexes, edges)
for vertex in vertexes:
vertex.view = VertexViewer(vertex.data)
# NOTE: determine min box length to create the best layout
minw = min(v.view.w for v in vertexes)
for edge in edges:
edge.view = EdgeViewer()
sug = SugiyamaLayout(graph.C[0])
graph = graph.C[0]
roots = list(filter(lambda x: len(x.e_in()) == 0, graph.sV))
sug.init_all(roots=roots, optimize=True)
sug.yspace = VertexViewer.HEIGHT
sug.xspace = minw
sug.route_edge = route_with_lines
sug.draw()
return sug
def draw_graph(G, simple=False, pause=False):
print("...drawing graph...")
if simple:
poses = simple_sugi.pos(G)
else:
g = grutils.convert_nextworkx_graph_to_grandalf(G)
from grandalf.layouts import SugiyamaLayout
class DefaultView(object):
w, h = 10, 10
for v in g.V():
v.view = DefaultView()
sug = SugiyamaLayout(g.C[0])
sug.init_all() # roots=[V[0]]) #, inverted_edges=[V[4].e_to(V[0])])
sug.draw()
poses = {v.data: (-v.view.xy[0], -v.view.xy[1]) for v in g.C[0].sV}
node_colors = nx.get_node_attributes(G, 'color')
if node_colors:
nx.draw(G,
pos=poses,
with_labels=True,
node_color=node_colors.values())
else:
global colors
try:
node_colors = {node: colors[node.o_id] for node in G.nodes}
nx.draw(G,
pos=poses,
with_labels=True,
node_color=node_colors.values())
except AttributeError:
warnings.warn("Node didn't have color?")
nx.draw(G, pos=poses, with_labels=True)
# x.draw_networkx_edges(G, pos=poses)
if pause:
plt.show()
else:
# plt.pause(0.01) pauses for 0.01s, and runs plt's GUI main loop
plt.pause(0.01)
fixins._is_plot_active = True
def sugiyama_layout(g):
"""
Position nodes using Sugiyama algorithm.
Returns dictionary of positions keyed by node.
:param g: NetworkX graph. A position will be assigned to every node in G.
:type g: networkx.classes.digraph.DiGraph
:return: dict
"""
# verteces (for grandalf lib)
vertices = {node: Vertex(node) for node in g.nodes}
# edges (for grandalf lib)
edges = [
Edge(vertices[v_from], vertices[v_to]) for v_from, v_to in g.edges
]
# build graph
for v_name in vertices:
vertices[v_name].view = _DefaultView()
g = Graph(vertices.values(), edges)
sug = SugiyamaLayout(g.C[0])
sug.init_all(optimize=True)
sug.draw()
pos_names = []
pos_xs = []
pos_ys = []
for v in g.C[0].sV:
pos_names.append(v.data)
pos_xs.append(v.view.xy[0])
pos_ys.append(v.view.xy[1])
scaler = MinMaxScaler()
scaled_x = scaler.fit_transform(np.array(pos_xs).reshape(-1, 1))[:, 0]
scaled_y = scaler.fit_transform(np.array(pos_ys).reshape(-1, 1))[:, 0]
pos = {
pos_names[i]: np.array([scaled_x[i], scaled_y[i]])
for i in range(len(pos_names))
}
return pos
def test_sugiyama_ranking():
gr, data_to_vertex = create_scenario()
sug = SugiyamaLayout(gr)
sug.route_edge = route_with_rounded_corners
sug.init_all()
# rank 0: v4 v0
# \ / |
# rank 1: \ v1 |
# \ / |
# rank 2: v5 /
# \ /
# rank 3: v2
# |
# rank 4: v3
rank_to_data = _compute_rank_to_data(sug)
assert rank_to_data == {
0: ['v4', 'v0'],
1: ['v1'],
2: ['v5'],
3: ['v2'],
4: ['v3'],
}
sug.draw(N=10)
def initView(self):
vertexs = {}
for lockey, block in self.ircfg.blocks.items():
vertexs[lockey] = Vertex(block)
vertexs[lockey].view = IRBlockView(lockey, block, False)
edges = []
for src in vertexs:
successLocKeys = self.ircfg.successors(src)
for key in successLocKeys:
if key in vertexs:
vSrc = vertexs[src]
vDst = vertexs[key]
edge = Edge(vSrc, vDst)
edge.view = BasicEdge(vDst)
edges.append(edge)
vSrc.view.outBlocks.append(vDst.view)
vDst.view.inBlocks.append(vSrc.view)
self.graph = Graph(vertexs.values(), edges)
sugLayout = SugiyamaLayout(self.graph.C[0])
sugLayout.route_edge = route_with_lines
sugLayout.init_all()
sugLayout.draw()
for v in vertexs.values():
self.addBlock(v.view, v.view.xy[0] - (v.view.w / 2), v.view.xy[1] - (v.view.h / 2))
for e in edges:
srcView = e.v[0].view
srcBlock = e.v[0].data
dstBlock = e.v[1].data
if len(srcView.outBlocks) == 1:
color = Qt.darkBlue
elif dstBlock.loc_key == self.ircfg.successors(srcBlock.loc_key)[0]:
color = Qt.darkRed
else:
color = Qt.darkGreen
edge_view = e.view
edge_view.color = color
self.scene.addItem(edge_view)
def _layout_graph_sugiyama(graph):
"""
Arrange the graph automatically using grandalf package
"""
from grandalf.graphs import Graph, Vertex, Edge
from grandalf.layouts import SugiyamaLayout
# Build the viez class for grandalf vertices
class View(object):
def __init__(self, w, h):
self.w = w
self.h = h
self.xy = (0, 0)
# Build the grandalf graph
ggraph = Graph()
# Vertices
vertices_by_id = {}
all_nodes_by_id = {n.id: n for n in graph.all_nodes()}
# Get average width for distance between nodes
avg_width = 0
avg_height = 0
for n in all_nodes_by_id.values():
v = Vertex(n.id)
if NODE_LAYOUT_DIRECTION == NODE_LAYOUT_HORIZONTAL:
view = View(n.view.height, n.view.width)
else:
view = View(n.view.width, n.view.height)
avg_width += n.view.width
avg_height += n.view.height
v.view = view
vertices_by_id[n.id] = v
avg_width /= len(all_nodes_by_id)
avg_height /= len(all_nodes_by_id)
for v in vertices_by_id.values():
ggraph.add_vertex(v)
# Edges
inverted_edges = []
looked_up_nodes = set([])
for n in all_nodes_by_id.values():
for cns in n.connected_output_nodes().values():
for cn in cns:
e = Edge(vertices_by_id[n.id], vertices_by_id[cn.id])
if cn.id in looked_up_nodes:
inverted_edges.append(e)
else:
looked_up_nodes.add(cn.id)
ggraph.add_edge(e)
# Build the layout
sug = SugiyamaLayout(ggraph.C[0])
sug.yspace = avg_width if NODE_LAYOUT_DIRECTION == NODE_LAYOUT_HORIZONTAL else avg_height
sug.xspace = avg_height if NODE_LAYOUT_DIRECTION == NODE_LAYOUT_HORIZONTAL else avg_width
print(inverted_edges)
# sug.init_all(inverted_edges=inverted_edges or None)
sug.init_all()
sug.draw(10)
for v in ggraph.C[0].sV:
node = all_nodes_by_id[v.data]
if NODE_LAYOUT_DIRECTION == NODE_LAYOUT_HORIZONTAL:
node.set_pos(*reversed(v.view.xy))
else:
node.set_pos(*v.view.xy)
(52.153148511892184,200), (54.27650767350815,200), (38.001702916324795,200), (61.59543225340435,200), (57.520984909950286,200), (64.49612302995996,200), (71.38960484928593,200), (67.53662520941695,200), (49.73541984499222,200), ] for i,v in enumerate(V): v.view = defaultview() v.view.w, v.view.h = sizeList[i] packSpace = 4 sug = SugiyamaLayout(g.C[0]) #sug.init_all(roots=[V[0]],inverted_edges=[V[4].e_to(V[0])]) sug.xspace = packSpace sug.yspace = packSpace #sug.order_iter = 32 sug.dirvh = 3 sug.init_all() sug.draw() # pos:0 (0.0,100.0) # pos:1 (-62.14111896447103,304.0) # pos:2 (2.867435005484097,304.0) # pos:3 (-79.36272225037119,304.0) # pos:4 (-378.7738580569366,508.0) # pos:5 (-309.1942538205011,508.0) # pos:6 (-247.25828385704486,508.0)
def get_json(self, params, id):
persons = PersonSet()
persons.add_folks(int(id), Relationship.ANCESTORS)
persons.add_folks(int(id), Relationship.DESCENDANTS)
persons.fetch_p2e(
event_types=(models.Event_Type.PK_birth,
models.Event_Type.PK_marriage))
decujus = persons.get_from_id(int(id))
# Recreate the birth events, we need child, father and mother to build
# the links. Likewise for marriage events.
births = collections.defaultdict(BirthEvent)
marriages = collections.defaultdict(MarriageEvent)
for a in persons.asserts:
if isinstance(a, models.P2E) and not a.disproved:
if a.event.type_id == models.Event_Type.PK_birth:
if a.role_id == models.Event_Type_Role.PK_principal:
births[a.event.id].set_child(a.person_id)
elif a.role_id == models.Event_Type_Role.PK_birth__father:
births[a.event.id].add_father(a.person_id)
elif a.role_id == models.Event_Type_Role.PK_birth__mother:
births[a.event.id].add_mother(a.person_id)
elif a.event.type_id == models.Event_Type.PK_marriage:
if a.role_id == models.Event_Type_Role.PK_principal:
marriages[a.event.id].add_spouse(a.person_id)
# Organize persons into layers, based on child->parent relationships
nodes = {main_id: Vertex(person)
for main_id, person in persons.persons.items()}
edges = [Edge(nodes[b.child], nodes[p])
for b in births.values()
for p in itertools.chain(b.fathers, b.mothers)
if b.child]
g = Graph(list(nodes.values()), edges)
for n in nodes.values():
n.view = NodeLayout()
perlayer = collections.defaultdict(list) # main_id for each layer
person_to_layer = {} # main_id => layer
for core in g.C:
sug = SugiyamaLayout(core)
sug.init_all(optimize=True)
sug.draw()
for layerIndex, layer in enumerate(sug.layers):
for node in layer:
# ignore dummy vertices
if hasattr(node, "data"):
perlayer[layerIndex].append(node.data.main_id)
person_to_layer[node.data.main_id] = layerIndex
# Build the list of families. Each family is described as a list
# [parent1, parent2, child1, child2,...]
children = collections.defaultdict(list)
for b in births.values():
if b.child:
for f in (b.fathers or [None]):
for m in (b.mothers or [None]):
if f is not None or m is not None:
children[(f, m)].append(b.child)
couples = set(children.keys())
for event in marriages.values():
for idx, p1 in enumerate(event.spouses):
for p2 in event.spouses[idx + 1:]:
couples.add((p1, p2))
families_by_layer = collections.defaultdict(list)
for c in couples:
family = list(a for a in c) + children[c]
layer = min(person_to_layer[p] for p in family if p is not None)
# If there are no children:
if len(family) <= 2:
layer -= 1
families_by_layer[layer].append(family)
flatten_families = [
families_by_layer[layerIndex]
for layerIndex, layer in enumerate(sug.layers)]
return {
"persons": persons.persons,
"perlayer": [perlayer[a]for a in sorted(perlayer)],
"families": flatten_families,
"decujus_name": decujus.display_name,
"decujus": decujus.main_id}
def updateLayeredLayoutWithComp(self):
class Vtx(object):
def __init__(self, name, idx, radius = 1, height = 1):
self.inNodes = set()
self.outNodes = set()
self.name = name
self.idx = idx
self.comp = None
self.compIdx = None
self.pos = None
self.radius = radius
self.fontHeight = height
self.height = max(radius, height)
self.firstKey = 0.0
self.secondKey = 0.0
self.thirdKey = 0.0
def getLayoutHeight(self):
return self.height + self.radius
def setLayoutPos(self,x,y):
self.pos = (x, y-0.5*(self.height - self.radius))
def getMinX(self):
return self.pos[0] - self.radius
def getMaxX(self):
return self.pos[0] + self.radius
def getMinY(self):
return self.pos[1] - self.radius
def getMaxY(self):
return self.pos[1] + self.height
def getPos(self):
return self.pos
if len(self.scene.itemDict) == 0:
return
vtxName2Id = {}
vtxList = []
edgeList = []
for name, item in self.scene.itemDict.items():
ithVtx = len(vtxList)
v = Vtx(name, ithVtx, item.getRadius(), item.getHeight())
v.dispName = item.name
vtxList.append(v)
vtxName2Id[name] = ithVtx
for edgeKey, edge in self.scene.edgeDict.items():
v1 = vtxName2Id[edgeKey[0]]
v2 = vtxName2Id[edgeKey[1]]
vtxList[v1].outNodes.add(v2)
vtxList[v2].inNodes.add(v1)
edgeList.append((v1,v2))
# 构造连通分量
remainSet = set([i for i in range(len(vtxList))])
compList = [] # [[idx1,idx2,...],[...]]
while len(remainSet) > 0:
# 找出剩余一个顶点并加入队列
ids = [list(remainSet)[0]]
ithComp = len(compList)
vtxList[ids[0]].comp = ithComp
compMap = []
# 遍历一个连通分量
while len(ids) > 0:
newIds = []
for id in ids:
# 把一个顶点加入连通分量
vtx = vtxList[id]
vtx.compIdx = len(compMap)
compMap.append(id)
# 把周围未遍历顶点加入队列
for inId in vtx.inNodes:
inVtx = vtxList[inId]
if inVtx.comp is None:
inVtx.comp = ithComp
newIds.append(inId)
for outId in vtx.outNodes:
outVtx = vtxList[outId]
if outVtx.comp is None:
outVtx.comp = ithComp
newIds.append(outId)
remainSet.discard(id)
ids = newIds
# 增加一个连通分量
compList.append(compMap)
from grandalf.graphs import Vertex, Edge, Graph
class VtxView(object):
def __init__(self, w, h):
self.w = w
self.h = h
# 构造每个连通分量的图结构
offset = (0,0)
bboxMin = [1e6,1e6]
bboxMax = [-1e6,-1e6]
self.scene.boxTest = []
for ithComp, compMap in enumerate(compList):
minPnt = [1e6,1e6]
maxPnt = [-1e6,-1e6]
# 构造图数据并布局
V = []
for oldId in compMap:
w = vtxList[oldId].getLayoutHeight()
vtx = Vertex(oldId)
height = 200
vtx.view = VtxView(w, height)
V.append(vtx)
E = []
for edgeKey in edgeList:
if vtxList[edgeKey[0]].comp == ithComp:
E.append(Edge(V[vtxList[edgeKey[0]].compIdx], V[vtxList[edgeKey[1]].compIdx]))
g = Graph(V,E)
from grandalf.layouts import SugiyamaLayout
packSpace = 4
sug = SugiyamaLayout(g.C[0])
sug.xspace = packSpace
sug.yspace = packSpace
#sug.order_iter = 32
sug.dirvh = 3
sug.init_all()
sug.draw(10)
# 统计包围盒
for v in g.C[0].sV:
oldV = vtxList[v.data]
x= v.view.xy[1]
y= v.view.xy[0]
oldV.setLayoutPos(x,y)
minPnt[0] = min(minPnt[0],oldV.getMinX())
minPnt[1] = min(minPnt[1],oldV.getMinY())
maxPnt[0] = max(maxPnt[0],oldV.getMaxX())
maxPnt[1] = max(maxPnt[1],oldV.getMaxY())
for v in g.C[0].sV:
oldV = vtxList[v.data]
posInComp = oldV.getPos()
newPos = (posInComp[0], posInComp[1]-minPnt[1]+offset[1])
self.scene.itemDict[oldV.name].setTargetPos(QtCore.QPointF(newPos[0], newPos[1]))
bboxMin[0] = min(bboxMin[0], newPos[0])
bboxMin[1] = min(bboxMin[1], newPos[1])
bboxMax[0] = max(bboxMax[0], newPos[0])
bboxMax[1] = max(bboxMax[1], newPos[1])
offset = (offset[0], offset[1]+maxPnt[1]-minPnt[1]+packSpace)
# 设置四个角的item
cornerList = self.scene.cornerItem
mar = 2000
cornerList[0].setPos(bboxMin[0]-mar, bboxMin[1]-mar)
cornerList[1].setPos(bboxMin[0]-mar, bboxMax[1]+mar)
cornerList[2].setPos(bboxMax[0]+mar, bboxMin[1]-mar)
cornerList[3].setPos(bboxMax[0]+mar, bboxMax[1]+mar)
# 更新标志数据
self.itemSet = set(self.scene.itemDict.keys())
self.edgeNum = len(self.scene.edgeDict)
def __init__(self, func):
super(funcView, self).__init__(of=func)
self.layout = SugiyamaLayout(func.cfg)
def _layout_nodes_and_edges(self, start):
"""
Compute coordinates for all CFG nodes and edges in the view
:param int start: The starting address
:return: a mapping between nodes' names and their coordinates (dict), and a list of edge coordinates (list)
:rtype: tuple
"""
coordinates = {}
node_map = {}
# Create the map
for child in self.children():
if not isinstance(child, QtContainer):
continue
node_map[child.declaration.addr] = child
if start not in node_map:
return { }
vertices = {}
edges = [ ]
# Create all edges
for s, d in self.declaration.edges:
src, dst = int(s), int(d)
if src in vertices:
src_v = vertices[src]
else:
src_v = Vertex(src)
vertices[src] = src_v
if dst in vertices:
dst_v = vertices[dst]
else:
dst_v = Vertex(dst)
vertices[dst] = dst_v
edge = Edge(src_v, dst_v)
edge.view = EdgeViewer()
edges.append(edge)
# Create all vertices
for child in self.children():
addr = child.declaration.addr
if addr not in vertices:
vertices[addr] = Vertex(addr)
g = Graph(vertices.values(), edges)
# create a view for each node
for addr, vertex in vertices.iteritems():
node = node_map[addr]
width, height = node._layout_manager.best_size()
vertex.view = VertexViewer(width, height)
sug = SugiyamaLayout(g.C[0])
sug.route_edge = self._route_edges
sug.init_all(roots=[vertices[start]])
sug.draw()
# extract coordinates for nodes
for addr, vertex in vertices.iteritems():
x, y = vertex.view.xy
# Convert the center coordinate to left corner coordinate
coordinates[addr] = (x - vertex.view.w / 2, y - vertex.view.h / 2)
# extract coordinates for edges
edge_coordinates = [ ]
for edge in edges:
if hasattr(edge.view, '_pts'):
edge_coordinates.append(edge.view._pts)
return coordinates, edge_coordinates
for row in reader:
G.add_edge(row[0], row[1])
g = grandalf.utils.convert_nextworkx_graph_to_grandalf(
G) # undocumented function
class defaultview(object):
w, h = 10, 10
for v in g.C[0].sV:
v.view = defaultview()
sug = SugiyamaLayout(g.C[0])
sug.init_all() # roots=[V[0]])
sug.draw(
) # This is a bit of a misnomer, as grandalf doesn't actually come with any visualization methods. This method instead calculates positions
poses = {v.data: (v.view.xy[0], v.view.xy[1])
for v in g.C[0].sV} # Extracts the positions
nodesWithPosition = list(poses.values())
nodesWithPosition.sort(key=lambda x: x[1], reverse=True)
counter = -1
distance = 30
previousY = nodesWithPosition[0][1]
offsetedNodes = []
for node in nodesWithPosition:
(52.153148511892184, 200),
(54.27650767350815, 200),
(38.001702916324795, 200),
(61.59543225340435, 200),
(57.520984909950286, 200),
(64.49612302995996, 200),
(71.38960484928593, 200),
(67.53662520941695, 200),
(49.73541984499222, 200),
]
for i, v in enumerate(V):
v.view = defaultview()
v.view.w, v.view.h = sizeList[i]
packSpace = 4
sug = SugiyamaLayout(g.C[0])
#sug.init_all(roots=[V[0]],inverted_edges=[V[4].e_to(V[0])])
sug.xspace = packSpace
sug.yspace = packSpace
#sug.order_iter = 32
sug.dirvh = 3
sug.init_all()
sug.draw()
# pos:0 (0.0,100.0)
# pos:1 (-62.14111896447103,304.0)
# pos:2 (2.867435005484097,304.0)
# pos:3 (-79.36272225037119,304.0)
# pos:4 (-378.7738580569366,508.0)
# pos:5 (-309.1942538205011,508.0)
# pos:6 (-247.25828385704486,508.0)
def create_sug_layout(self, graph):
sug = SugiyamaLayout(graph.C[0])
sug.route_edge = route_with_splines
sug.init_all(optimize=True)
sug.draw(10)
return sug
def json(self, subset=None):
"""
Return a json structure that can be sent to the GUI.
:param set[PersonaNode] subset: which persons to take into account
"""
def __build_families():
"""
Return a list of families found in the subset of self.
:rtype list[list[id]]: [parent1,parent2,child1.child2,...]
"""
tmp = {} # indexed on (father, mother)
for n in self:
if not subset or n in subset:
father = mother = None
for e in self.in_edges(n):
if e.kind == P2P_Link.KIND_FATHER:
father = e[0]
elif e.kind == P2P_Link.KIND_MOTHER:
mother = e[0]
elif e.kind == P2P_Link.KIND_SPOUSE:
n2 = e[0].main_id
if not subset or n2 in subset:
tmp.setdefault((n2, n.main_id), [n2, n.main_id])
else:
raise Exception("Unknown edge in graph: %s" % e.kind)
# Filter events irrelevant to our subset of the graph
if subset:
if father and father not in subset:
logger.debug('Cancel father')
father = None
if mother and mother not in subset:
logger.debug('Cancel mother')
mother = None
if father:
father = father.main_id
if mother:
mother = mother.main_id
if father or mother:
t = tmp.setdefault((father, mother), [father, mother])
if n:
t.append(n.main_id)
return list(tmp.values())
# Prepare a temporary graph: it is used to subset the list of nodes
# to those specified in argument, and the list of edges to the
# parent/child relationships
tmp = Digraph()
for e in self.edges():
if e.kind in (P2P_Link.KIND_MOTHER, P2P_Link.KIND_FATHER) and \
(subset is None or (
(e[0] in subset) and \
(e[1] in subset))):
tmp.add_edge(e)
families = __build_families()
logger.debug('%s families' % (len(families), ))
# Using an external library for layout
subset2 = [n.main_id for n in subset] if subset else None
Vmap = {v.main_id: Vertex(v)
for v in self
if subset2 is None or not v.ids.isdisjoint(subset2)}
V = [v for v in Vmap.values()]
E = [Edge(Vmap[e[0].main_id], Vmap[e[1].main_id])
for e in self.edges()
if e.kind in (P2P_Link.KIND_MOTHER, P2P_Link.KIND_FATHER) and \
(e[0].main_id in Vmap) and
(e[1].main_id in Vmap)
]
g = Graph(V, E)
# for v in V:
# logger.info('%s [label="%s"];' % (v.data.main_id, v.data.name))
# for e in E:
# logger.info('%s -> %s;' % (e.v[0].data.main_id, e.v[1].data.main_id))
class defaultview(object):
w = 10
h = 10
for v in V:
v.view = defaultview()
persons = {}
perlayer = []
persons_to_layer = {}
logger.debug('%s components in graph' % (len(g.C), ))
for core in g.C:
sug = SugiyamaLayout(core)
sug.init_all(optimize=True, cons=False)
sug.draw()
sug.layers.reverse()
for layerIndex, layer in enumerate(sug.layers):
if layerIndex not in perlayer:
perlayer.extend([[]] * (layerIndex + 1 - len(perlayer)))
for node in layer:
# ignore dummy vertices
if hasattr(node, "data"):
persons[node.data.main_id] = {
"id": node.data.main_id,
"name": node.data.name,
"sex": node.data.sex,
}
perlayer[layerIndex].append(node.data.main_id)
for node in layer:
if hasattr(node, "data"):
persons_to_layer[node.data.main_id] = layerIndex
families_by_layer = {}
for f in families:
l = min(persons_to_layer[id] for id in f if id is not None)
# If there are no children
if len(f) <= 2:
l -= 1
families_by_layer.setdefault(l, []).append(f)
flatten_families = [
families_by_layer.get(layerIndex, [])
for layerIndex, layer in enumerate(sug.layers)
]
return {
"perlayer": perlayer,
"persons": persons,
"families": flatten_families
}
def __init__(self, func):
from grandalf.layouts import SugiyamaLayout
super(funcView, self).__init__(of=func)
self.layout = SugiyamaLayout(func.cfg)
def updateLayeredLayoutWithComp(self):
class Vtx(object):
def __init__(self, name, idx, radius = 1, height = 1):
self.inNodes = set()
self.outNodes = set()
self.name = name
self.idx = idx
self.comp = None
self.compIdx = None
self.pos = None
self.radius = radius
self.fontHeight = height
self.height = max(radius, height)
self.firstKey = 0.0
self.secondKey = 0.0
self.thirdKey = 0.0
def getLayoutHeight(self):
return self.height + self.radius
def setLayoutPos(self,x,y):
self.pos = (x, y-0.5*(self.height - self.radius))
def getMinX(self):
return self.pos[0] - self.radius
def getMaxX(self):
return self.pos[0] + self.radius
def getMinY(self):
return self.pos[1] - self.radius
def getMaxY(self):
return self.pos[1] + self.height
def getPos(self):
return self.pos
if len(self.scene.itemDict) == 0:
return
vtxName2Id = {}
vtxList = []
edgeList = []
for name, item in self.scene.itemDict.items():
ithVtx = len(vtxList)
v = Vtx(name, ithVtx, item.getRadius(), item.getHeight())
v.dispName = item.name
vtxList.append(v)
vtxName2Id[name] = ithVtx
for edgeKey, edge in self.scene.edgeDict.items():
v1 = vtxName2Id[edgeKey[0]]
v2 = vtxName2Id[edgeKey[1]]
vtxList[v1].outNodes.add(v2)
vtxList[v2].inNodes.add(v1)
edgeList.append((v1,v2))
# 构造连通分量
remainSet = set([i for i in range(len(vtxList))])
compList = [] # [[idx1,idx2,...],[...]]
while len(remainSet) > 0:
# 找出剩余一个顶点并加入队列
ids = [list(remainSet)[0]]
ithComp = len(compList)
vtxList[ids[0]].comp = ithComp
compMap = []
# 遍历一个连通分量
while len(ids) > 0:
newIds = []
for id in ids:
# 把一个顶点加入连通分量
vtx = vtxList[id]
vtx.compIdx = len(compMap)
compMap.append(id)
# 把周围未遍历顶点加入队列
for inId in vtx.inNodes:
inVtx = vtxList[inId]
if inVtx.comp is None:
inVtx.comp = ithComp
newIds.append(inId)
for outId in vtx.outNodes:
outVtx = vtxList[outId]
if outVtx.comp is None:
outVtx.comp = ithComp
newIds.append(outId)
remainSet.discard(id)
ids = newIds
# 增加一个连通分量
compList.append(compMap)
from grandalf.graphs import Vertex, Edge, Graph
class VtxView(object):
def __init__(self, w, h):
self.w = w
self.h = h
# 构造每个连通分量的图结构
offset = (0,0)
bboxMin = [1e6,1e6]
bboxMax = [-1e6,-1e6]
self.scene.boxTest = []
for ithComp, compMap in enumerate(compList):
minPnt = [1e6,1e6]
maxPnt = [-1e6,-1e6]
# 构造图数据并布局
V = []
for oldId in compMap:
w = vtxList[oldId].getLayoutHeight()
vtx = Vertex(oldId)
height = 200
vtx.view = VtxView(w, height)
V.append(vtx)
E = []
for edgeKey in edgeList:
if vtxList[edgeKey[0]].comp == ithComp:
E.append(Edge(V[vtxList[edgeKey[0]].compIdx], V[vtxList[edgeKey[1]].compIdx]))
g = Graph(V,E)
from grandalf.layouts import SugiyamaLayout
packSpace = 4
sug = SugiyamaLayout(g.C[0])
sug.xspace = packSpace
sug.yspace = packSpace
#sug.order_iter = 32
sug.dirvh = 3
sug.init_all()
sug.draw(10)
# 统计包围盒
for v in g.C[0].sV:
oldV = vtxList[v.data]
x= v.view.xy[1]
y= v.view.xy[0]
oldV.setLayoutPos(x,y)
minPnt[0] = min(minPnt[0],oldV.getMinX())
minPnt[1] = min(minPnt[1],oldV.getMinY())
maxPnt[0] = max(maxPnt[0],oldV.getMaxX())
maxPnt[1] = max(maxPnt[1],oldV.getMaxY())
for v in g.C[0].sV:
oldV = vtxList[v.data]
posInComp = oldV.getPos()
newPos = (posInComp[0], posInComp[1]-minPnt[1]+offset[1])
self.scene.itemDict[oldV.name].setTargetPos(QtCore.QPointF(newPos[0], newPos[1]))
bboxMin[0] = min(bboxMin[0], newPos[0])
bboxMin[1] = min(bboxMin[1], newPos[1])
bboxMax[0] = max(bboxMax[0], newPos[0])
bboxMax[1] = max(bboxMax[1], newPos[1])
offset = (offset[0], offset[1]+maxPnt[1]-minPnt[1]+packSpace)
# 设置四个角的item
cornerList = self.scene.cornerItem
mar = 2000
cornerList[0].setPos(bboxMin[0]-mar, bboxMin[1]-mar)
cornerList[1].setPos(bboxMin[0]-mar, bboxMax[1]+mar)
cornerList[2].setPos(bboxMax[0]+mar, bboxMin[1]-mar)
cornerList[3].setPos(bboxMax[0]+mar, bboxMax[1]+mar)
# 更新标志数据
self.itemSet = set(self.scene.itemDict.keys())
self.edgeNum = len(self.scene.edgeDict)