#!/usr/bin/env python3 # -*- coding: utf-8 -*- # # Copyright 2020 Alibaba Group Holding Limited. All Rights Reserved. # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or agreed to in writing, software # distributed under the License is distributed on an "AS IS" BASIS, # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. # See the License for the specific language governing permissions and # limitations under the License. # import networkx.generators.small from graphscope.experimental.nx.utils.compat import import_as_graphscope_nx import_as_graphscope_nx(networkx.generators.small)
#!/usr/bin/env python3 # -*- coding: utf-8 -*- # # Copyright 2020 Alibaba Group Holding Limited. All Rights Reserved. # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or agreed to in writing, software # distributed under the License is distributed on an "AS IS" BASIS, # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. # See the License for the specific language governing permissions and # limitations under the License. # import networkx.utils.decorators from graphscope.experimental.nx.utils.compat import import_as_graphscope_nx import_as_graphscope_nx(networkx.utils.decorators)
import networkx.algorithms.assortativity.tests.test_neighbor_degree
import pytest
from graphscope.experimental.nx.utils.compat import import_as_graphscope_nx
import_as_graphscope_nx(
networkx.algorithms.assortativity.tests.test_neighbor_degree,
decorators=pytest.mark.usefixtures("graphscope_session"))
import networkx.algorithms.link_analysis.tests.test_hits
import pytest
from graphscope.experimental.nx.utils.compat import import_as_graphscope_nx
import_as_graphscope_nx(
networkx.algorithms.link_analysis.tests.test_hits,
decorators=pytest.mark.usefixtures("graphscope_session"))
#!/usr/bin/env python3 # -*- coding: utf-8 -*- # # Copyright 2020 Alibaba Group Holding Limited. All Rights Reserved. # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or agreed to in writing, software # distributed under the License is distributed on an "AS IS" BASIS, # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. # See the License for the specific language governing permissions and # limitations under the License. # import networkx.generators.line from graphscope.experimental.nx.utils.compat import import_as_graphscope_nx import_as_graphscope_nx(networkx.generators.line)
import networkx.algorithms.shortest_paths.tests.test_generic
import pytest
from graphscope.experimental.nx.utils.compat import import_as_graphscope_nx
import_as_graphscope_nx(
networkx.algorithms.shortest_paths.tests.test_generic,
decorators=pytest.mark.usefixtures("graphscope_session"))
#!/usr/bin/env python3 # -*- coding: utf-8 -*- # # Copyright 2020 Alibaba Group Holding Limited. All Rights Reserved. # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or agreed to in writing, software # distributed under the License is distributed on an "AS IS" BASIS, # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. # See the License for the specific language governing permissions and # limitations under the License. # import networkx.generators.degree_seq from graphscope.experimental.nx.utils.compat import import_as_graphscope_nx import_as_graphscope_nx(networkx.generators.degree_seq)
# This file is part of NetworkX.
#
# NetworkX is distributed under a BSD license; see LICENSE.txt for more
# information.
#
import networkx.readwrite.edgelist
from networkx.readwrite.edgelist import parse_edgelist as _parse_edgelist
from networkx.readwrite.edgelist import read_edgelist as _read_edgelist
from networkx.utils.decorators import open_file
from graphscope.experimental import nx
from graphscope.experimental.nx.utils.compat import import_as_graphscope_nx
from graphscope.experimental.nx.utils.compat import patch_docstring
import_as_graphscope_nx(networkx.readwrite.edgelist)
@patch_docstring(_parse_edgelist)
def parse_edgelist(
lines, comments="#", delimiter=None, create_using=None, nodetype=None, data=True
):
from ast import literal_eval
G = nx.empty_graph(0, create_using)
edges = []
for line in lines:
p = line.find(comments)
if p >= 0:
line = line[:p]
if not len(line):
import networkx.algorithms.node_classification.tests.test_harmonic_function
import pytest
from graphscope.experimental.nx.utils.compat import import_as_graphscope_nx
import_as_graphscope_nx(
networkx.algorithms.node_classification.tests.test_harmonic_function,
decorators=pytest.mark.usefixtures("graphscope_session"))
import networkx.algorithms.components.tests.test_semiconnected
import pytest
from graphscope.experimental.nx.utils.compat import import_as_graphscope_nx
from graphscope.experimental.nx.utils.compat import with_graphscope_nx_context
import_as_graphscope_nx(
networkx.algorithms.components.tests.test_semiconnected,
decorators=pytest.mark.usefixtures("graphscope_session"))
from networkx.algorithms.components.tests.test_semiconnected import TestIsSemiconnected
@pytest.mark.usefixtures("graphscope_session")
@with_graphscope_nx_context(TestIsSemiconnected)
class TestIsSemiconnected():
def test_undirected(self):
pytest.raises(nx.NetworkXNotImplemented, nx.is_semiconnected,
nx.Graph())
def test_empty(self):
pytest.raises(nx.NetworkXPointlessConcept, nx.is_semiconnected,
nx.DiGraph())
import networkx.algorithms.node_classification.tests.test_local_and_global_consistency
import pytest
from graphscope.experimental.nx.utils.compat import import_as_graphscope_nx
import_as_graphscope_nx(
networkx.algorithms.node_classification.tests.
test_local_and_global_consistency,
decorators=pytest.mark.usefixtures("graphscope_session"))
#!/usr/bin/env python3 # -*- coding: utf-8 -*- # # Copyright 2020 Alibaba Group Holding Limited. All Rights Reserved. # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or agreed to in writing, software # distributed under the License is distributed on an "AS IS" BASIS, # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. # See the License for the specific language governing permissions and # limitations under the License. # """ GraphScope's compatible layer for :mod:`networkx.relabel`. """ import networkx.relabel from graphscope.experimental import nx from graphscope.experimental.nx.utils.compat import import_as_graphscope_nx import_as_graphscope_nx(networkx.relabel)
#!/usr/bin/env python3 # -*- coding: utf-8 -*- # # Copyright 2020 Alibaba Group Holding Limited. All Rights Reserved. # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or agreed to in writing, software # distributed under the License is distributed on an "AS IS" BASIS, # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. # See the License for the specific language governing permissions and # limitations under the License. # import networkx.generators.community from graphscope.experimental.nx.utils.compat import import_as_graphscope_nx import_as_graphscope_nx(networkx.generators.community)
import networkx.algorithms.centrality.tests.test_dispersion
import pytest
from graphscope.experimental.nx.utils.compat import import_as_graphscope_nx
import_as_graphscope_nx(
networkx.algorithms.centrality.tests.test_dispersion,
decorators=pytest.mark.usefixtures("graphscope_session"))
#!/usr/bin/env python3 # -*- coding: utf-8 -*- # # Copyright 2020 Alibaba Group Holding Limited. All Rights Reserved. # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or agreed to in writing, software # distributed under the License is distributed on an "AS IS" BASIS, # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. # See the License for the specific language governing permissions and # limitations under the License. # import networkx.utils.misc from graphscope.experimental.nx.utils.compat import import_as_graphscope_nx import_as_graphscope_nx(networkx.utils.misc)
import networkx.algorithms.tests.test_distance_regular
import pytest
from graphscope.experimental.nx.utils.compat import import_as_graphscope_nx
import_as_graphscope_nx(
networkx.algorithms.tests.test_distance_regular,
decorators=pytest.mark.usefixtures("graphscope_session"))
import networkx.algorithms.centrality.tests.test_current_flow_betweenness_centrality_subset
import pytest
from graphscope.experimental.nx.utils.compat import import_as_graphscope_nx
import_as_graphscope_nx(
networkx.algorithms.centrality.tests.
test_current_flow_betweenness_centrality_subset,
decorators=pytest.mark.usefixtures("graphscope_session"))
import networkx.algorithms.approximation.tests.test_treewidth
import pytest
from graphscope.experimental.nx.utils.compat import import_as_graphscope_nx
import_as_graphscope_nx(networkx.algorithms.approximation.tests.test_treewidth,
decorators=pytest.mark.usefixtures("graphscope_session"))
#!/usr/bin/env python3 # -*- coding: utf-8 -*- # # Copyright 2020 Alibaba Group Holding Limited. All Rights Reserved. # # Licensed under the Apache License, Version 2.0 (the "License"); # you may not use this file except in compliance with the License. # You may obtain a copy of the License at # # http://www.apache.org/licenses/LICENSE-2.0 # # Unless required by applicable law or agreed to in writing, software # distributed under the License is distributed on an "AS IS" BASIS, # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. # See the License for the specific language governing permissions and # limitations under the License. # import networkx.generators.trees from graphscope.experimental.nx.utils.compat import import_as_graphscope_nx import_as_graphscope_nx(networkx.generators.trees)
import networkx.algorithms.community.tests.test_quality
import pytest
from graphscope.experimental.nx.utils.compat import import_as_graphscope_nx
import_as_graphscope_nx(
networkx.algorithms.community.tests.test_quality,
decorators=pytest.mark.usefixtures("graphscope_session"))
import networkx.algorithms.isomorphism.tests.test_temporalisomorphvf2
import pytest
from graphscope.experimental.nx.utils.compat import import_as_graphscope_nx
import_as_graphscope_nx(
networkx.algorithms.isomorphism.tests.test_temporalisomorphvf2,
decorators=pytest.mark.usefixtures("graphscope_session"))
@pytest.mark.skip(reason="not supoort time object as attribute")
class TestTimeRespectingGraphMatcher(object):
pass
@pytest.mark.skip(reason="not supoort time object as attribute")
class TestDiTimeRespectingGraphMatcher(object):
pass
# NetworkX is distributed under a BSD license; see LICENSE.txt for more
# information.
#
import warnings
import networkx.convert
from networkx.convert import from_dict_of_dicts
from networkx.convert import from_dict_of_lists
from networkx.convert import from_edgelist
from graphscope.experimental import nx
from graphscope.experimental.nx.utils.compat import import_as_graphscope_nx
from graphscope.framework.dag_utils import arrow_to_dynamic
import_as_graphscope_nx(networkx.convert)
def to_nx_graph(data, create_using=None, multigraph_input=False): # noqa: C901
"""Make a graph from a known data structure.
The preferred way to call this is automatically
from the class constructor
>>> d = {0: {1: {'weight':1}}} # dict-of-dicts single edge (0,1)
>>> G = nx.Graph(d)
instead of the equivalent
>>> G = nx.from_dict_of_dicts(d)
import networkx.algorithms.flow.tests.test_maxflow_large_graph
import pytest
from graphscope.experimental.nx.utils.compat import import_as_graphscope_nx
from graphscope.experimental.nx.utils.compat import with_graphscope_nx_context
import_as_graphscope_nx(
networkx.algorithms.flow.tests.test_maxflow_large_graph,
decorators=pytest.mark.usefixtures("graphscope_session"))
from networkx.algorithms.flow.tests.test_maxflow_large_graph import \
TestMaxflowLargeGraph
@pytest.mark.usefixtures("graphscope_session")
@with_graphscope_nx_context(TestMaxflowLargeGraph)
class TestMaxflowLargeGraph():
@pytest.mark.skip(reason="not support tuple as node")
def test_pyramid(self):
pass
@pytest.mark.skip(reason="not support read_gpickle")
def test_gl1(self):
pass
@pytest.mark.skip(reason="not support read_gpickle")
def test_gw1(self):
pass
@pytest.mark.skip(reason="not support read_gpickle")
def test_wlm3(self):
import networkx.algorithms.tests.test_minors
import pytest
from graphscope.experimental.nx.utils.compat import import_as_graphscope_nx
import_as_graphscope_nx(networkx.algorithms.tests.test_minors,
decorators=pytest.mark.usefixtures("graphscope_session"))
@pytest.mark.skip(reason="not support Graph object as node.")
class TestQuotient(object):
pass
@pytest.mark.skip(reason="not support Graph object as node.")
class TestContraction(object):
pass
import networkx.algorithms.bipartite.tests.test_centrality
import pytest
from graphscope.experimental.nx.utils.compat import import_as_graphscope_nx
import_as_graphscope_nx(
networkx.algorithms.bipartite.tests.test_centrality,
decorators=pytest.mark.usefixtures("graphscope_session"))
import networkx.algorithms.traversal.tests.test_beamsearch
import pytest
from graphscope.experimental.nx.utils.compat import import_as_graphscope_nx
import_as_graphscope_nx(
networkx.algorithms.traversal.tests.test_beamsearch,
decorators=pytest.mark.usefixtures("graphscope_session"))
# All rights reserved.
#
# This file is part of NetworkX.
#
# NetworkX is distributed under a BSD license; see LICENSE.txt for more
# information.
#
import networkx.convert_matrix
from networkx.convert_matrix import from_pandas_edgelist as _from_pandas_edgelist
from graphscope.experimental import nx
from graphscope.experimental.nx.utils.compat import import_as_graphscope_nx
from graphscope.experimental.nx.utils.compat import patch_docstring
import_as_graphscope_nx(networkx.convert_matrix)
@patch_docstring(_from_pandas_edgelist)
def from_pandas_edgelist(df,
source="source",
target="target",
edge_attr=None,
create_using=None):
g = nx.empty_graph(0, create_using)
if edge_attr is None:
g.add_edges_from(zip(df[source], df[target]))
return g
# Additional columns requested
