def publishImageData(self, imagedata, save):
acquisitionimagedata = leginondata.AcquisitionImageData(initializer=imagedata)
if save:
griddata = leginondata.GridData()
if self.grid is not None:
gridinfo = self.gridmapping[self.grid]
griddata["grid ID"] = gridinfo["gridId"]
emgriddata = leginondata.EMGridData(name=gridinfo["label"], project=gridinfo["projectId"])
griddata["emgrid"] = emgriddata
griddata["insertion"] = self.insertion
acquisitionimagedata["grid"] = griddata
self.gridlabel = gridlabeler.getGridLabel(griddata)
elif self.emgrid is not None:
# New style that uses emgridata only for grid entry
griddata["emgrid"] = self.emgrid
griddata["insertion"] = self.insertion
acquisitionimagedata["grid"] = griddata
else:
self.gridlabel = ""
acquisitionimagedata["label"] = self.settings["image label"]
self.setImageFilename(acquisitionimagedata)
acquisitionimagedata.attachPixelSize()
try:
self.publish(imagedata["scope"], database=True)
self.publish(imagedata["camera"], database=True)
self.publish(acquisitionimagedata, database=True)
except RuntimeError:
raise node.PublishError
## publish event even if no save
self.publish(acquisitionimagedata, pubevent=True)
def publishImageData(self, imagedata, save): acquisitionimagedata = leginondata.AcquisitionImageData(initializer=imagedata) if save: if self.grid is not None: gridinfo = self.gridmapping[self.grid] griddata = leginondata.GridData() griddata['grid ID'] = gridinfo['gridId'] emgriddata = leginondata.EMGridData(name=gridinfo['label'],project=gridinfo['projectId']) griddata['emgrid'] = emgriddata acquisitionimagedata['grid'] = griddata self.gridlabel = gridlabeler.getGridLabel(griddata) else: self.gridlabel = '' acquisitionimagedata['label'] = self.settings['image label'] self.setImageFilename(acquisitionimagedata) acquisitionimagedata.attachPixelSize() try: self.publish(imagedata['scope'], database=True) self.publish(imagedata['camera'], database=True) self.publish(acquisitionimagedata, database=True) except RuntimeError: raise node.PublishError ## publish event even if no save self.publish(acquisitionimagedata, pubevent=True)
def publishImageData(self, imagedata, save):
acquisitionimagedata = leginondata.AcquisitionImageData(
initializer=imagedata)
if save:
griddata = leginondata.GridData()
if self.grid is not None:
gridinfo = self.gridmapping[self.grid]
griddata['grid ID'] = gridinfo['gridId']
emgriddata = leginondata.EMGridData(
name=gridinfo['label'], project=gridinfo['projectId'])
griddata['emgrid'] = emgriddata
griddata['insertion'] = self.insertion
acquisitionimagedata['grid'] = griddata
self.gridlabel = gridlabeler.getGridLabel(griddata)
elif self.emgrid is not None:
# New style that uses emgridata only for grid entry
griddata['emgrid'] = self.emgrid
griddata['insertion'] = self.insertion
acquisitionimagedata['grid'] = griddata
else:
self.gridlabel = ''
acquisitionimagedata['label'] = self.settings['image label']
self.setImageFilename(acquisitionimagedata)
acquisitionimagedata.attachPixelSize()
try:
self.publish(imagedata['scope'], database=True)
self.publish(imagedata['camera'], database=True)
self.publish(acquisitionimagedata, database=True)
except RuntimeError:
raise node.PublishError
## publish event even if no save
self.publish(acquisitionimagedata, pubevent=True)
def setGrid(self,evt):
if evt['grid'] is None:
self.grid = None
self.logger.info('Remove filename grid prefix')
return
grid = evt['grid']
self.grid = grid
label = gridlabeler.getGridLabel(grid)
self.logger.info('Add grid prefix as '+label)
def setGrid(self,evt):
if evt['grid'] is None:
self.grid = None
self.logger.info('Remove filename grid prefix')
return
grid = evt['grid']
self.grid = grid
label = gridlabeler.getGridLabel(grid)
self.logger.info('Add grid prefix as '+label)
def newRootName(imagedata, usegridlabel): parts = [] sessionstr = imagedata['session']['name'] parts.append(sessionstr) if usegridlabel: if 'grid' in imagedata and imagedata['grid'] is not None: gridlabel = gridlabeler.getGridLabel(imagedata['grid']) parts.append(gridlabel) sep = '_' name = sep.join(parts) return name
def newRootName(imagedata, usegridlabel): parts = [] sessionstr = imagedata['session']['name'] parts.append(sessionstr) if usegridlabel: if 'grid' in imagedata and imagedata['grid'] is not None: gridlabel = gridlabeler.getGridLabel(imagedata['grid']) parts.append(gridlabel) sep = '_' name = sep.join(parts) return name
def getTargetList(self, evt):
self.logger.debug('Creating target list...')
if evt is None:
# generated from user invoked method
targetlist = self.newTargetList(mosaic=True, label=self.settings['label'])
grid = None
else:
# generated from external event
grid = evt['grid']
label = gridlabeler.getGridLabel(grid)
targetlist = self.newTargetList(mosaic=True, label=label)
self.logger.debug('Target list created')
return targetlist, grid
def getTargetList(self, evt):
self.logger.debug('Creating target list...')
if evt is None:
# generated from user invoked method
targetlist = self.newTargetList(mosaic=True, label=self.settings['label'])
grid = None
else:
# generated from external event
grid = evt['grid']
label = gridlabeler.getGridLabel(grid)
targetlist = self.newTargetList(mosaic=True, label=label)
self.logger.debug('Target list created')
return targetlist, grid
def setGrid(self,evt):
if evt['grid'] is None:
self.gridmapping = {}
self.grid = None
self.gridlabel = None
self.logger.info('Remove filename grid prefix')
self.panel.onUnsetRobotGrid()
return
griddata = evt['grid']
self.getGrids(evt['tray label'])
self.grid = '%d - %s' % (evt['grid location'], griddata['emgrid']['name'])
self.gridlabel = gridlabeler.getGridLabel(griddata)
self.logger.info('Add grid prefix as '+self.gridlabel)
self.panel.onSetRobotGrid()
def setGrid(self, evt):
if evt["grid"] is None:
self.gridmapping = {}
self.grid = None
self.gridlabel = None
self.logger.info("Remove filename grid prefix")
self.panel.onUnsetRobotGrid()
return
griddata = evt["grid"]
self.insertion = griddata["insertion"]
self.gridlabel = gridlabeler.getGridLabel(griddata)
if griddata["grid ID"] is not None:
self.getGrids(evt["tray label"])
self.grid = "%d - %s" % (evt["grid location"], griddata["emgrid"]["name"])
else:
self.emgrid = griddata["emgrid"]
self.logger.info("Add grid prefix as " + self.gridlabel)
self.panel.onSetRobotGrid()
def setGrid(self, evt):
if evt['grid'] is None:
self.gridmapping = {}
self.grid = None
self.gridlabel = None
self.logger.info('Remove filename grid prefix')
self.panel.onUnsetRobotGrid()
return
griddata = evt['grid']
self.insertion = griddata['insertion']
self.gridlabel = gridlabeler.getGridLabel(griddata)
if griddata['grid ID'] is not None:
self.getGrids(evt['tray label'])
self.grid = '%d - %s' % (evt['grid location'],
griddata['emgrid']['name'])
else:
self.emgrid = griddata['emgrid']
self.logger.info('Add grid prefix as ' + self.gridlabel)
self.panel.onSetRobotGrid()
