def _trackNameExists(genome, trackName):
from gtrackcore_memmap.track.hierarchy.ProcTrackOptions import ProcTrackOptions
if not ProcTrackOptions.isValidTrack(genome, trackName):
print 'Track "%s" of genome "%s" is not valid.' % (":".join(trackName), genome)
return False
return True
def yielder(self, curTn):
#if self._avoidLiterature and curTn == GenomeInfo.getPropertyTrackName(self._genome, 'literature'):
# return
for subtype in ProcTrackOptions.getSubtypes(self._genome, curTn, self._fullAccess):
#if self._avoidLiterature and subtype == 'Literature':
if subtype[0] in ['.','_']:
continue
newTn = curTn + [subtype]
doBreak = False
for subTn in self.yielder(newTn):
yield subTn
if ProcTrackOptions.isValidTrack(self._genome, curTn, self._fullAccess):
yield curTn
def _calcAndStoreSubTrackCount(self, trackName):
ti = TrackInfo(self._genome, trackName)
trackCount = 0
for subTrackName in ProcTrackOptions.getSubtypes(self._genome, trackName, True):
subTrackCount = TrackInfo(self._genome, trackName + [subTrackName]).subTrackCount
if subTrackCount:
trackCount += subTrackCount
if ti.isValid():
trackCount += 1
ti.subTrackCount = trackCount
ti.store()