def test_transfer_internal_labels(self):
raxml_seq_recon = RAxMLSequenceReconstruction('', '', '', 'output_tree', '', False)
raxml_seq_recon.transfer_internal_names_to_tree('gubbins/tests/data/source_tree.tre', 'gubbins/tests/data/destination_tree.tre', 'renamed_output_tree')
assert os.path.exists('renamed_output_tree')
self.assertTrue(filecmp.cmp('renamed_output_tree','gubbins/tests/data/expected_renamed_output_tree', shallow = False))
