def set_pipeline(self, *args):
print("set_pipeline", *args)
print(self.pfamily)
if self.pipelineframe:
self.notebook.forget(self.pipelineframe)
if self.pfamily.get() == 'exomeseq':
print('exomeseq')
self.pipelineframe = ExomeSeqFrame(
self.notebook,
'ExomeSeq', #self.pfamily.get(),
self.annotation,
global_info=self)
elif self.pfamily.get() == 'genomeseq':
print('genomeseq')
self.pipelineframe = GenomeSeqFrame(
self.notebook,
'GenomeSeq', #self.pfamily.get(),
self.annotation,
global_info=self)
elif self.pfamily.get() == 'mirseq':
print('mirseq')
self.pipelineframe = MiRSeqFrame(
self.notebook,
'miR-Seq', #self.pfamily.get(),
self.annotation,
global_info=self)
elif self.pfamily.get() == 'chipseq':
print('chipseq')
self.pipelineframe = ChIPSeqFrame(
self.notebook,
'ChIPseq', #self.pfamily.get(),
self.annotation,
global_info=self)
elif self.pfamily.get() == 'rnaseq':
print('rnaseq')
self.pipelineframe = RNASeqFrame(
self.notebook,
'RNAseq', #self.pfamily.get(),
self.annotation,
global_info=self)
else:
return
pass
self.notebook.select(self.pipelineframe)
def set_pipeline(self, *args):
print("set_pipeline", *args)
print(self.pfamily.get())
print(self.annotation.get())
annotation = self.annotation.get()
set1 = [
'Select the genome', 'hg19', 'mm10', 'mm9', 'hg38', 'hs37d5',
'hs38d1', 'hg38_30_KSHV', 'hg38_HPV16', 'canFam3', 'Mmul_8.0.1',
'hg38_30', 'mm10_M21'
]
set2 = ['Select the genome', 'hg19', 'mm10', 'mm9', 'hg38']
set3 = ['Select the genome', 'GRCh38', 'mm10']
set4 = ['Select the genome', 'hg19', 'mm10', 'hg38']
if self.pipelineframe:
self.notebook.forget(self.pipelineframe)
if self.pfamily.get() == 'exomeseq':
print('exomeseq')
if not annotation in set4:
outtxt_short = "%s is not supported in this pipeline!" % (
annotation)
showinfo("WARNING", outtxt_short)
self.pipelineframe = ExomeSeqFrame(
self.notebook,
'ExomeSeq', #self.pfamily.get(),
self.annotation,
global_info=self)
elif self.pfamily.get() == 'genomeseq':
print('genomeseq')
if not annotation in set4:
outtxt_short = "%s is not supported in this pipeline!" % (
annotation)
showinfo("WARNING", outtxt_short)
self.pipelineframe = GenomeSeqFrame(
self.notebook,
'GenomeSeq', #self.pfamily.get(),
self.annotation,
global_info=self)
elif self.pfamily.get() == 'mirseq':
print('mirseq')
if not annotation in set2:
outtxt_short = "%s is not supported in this pipeline!" % (
annotation)
showinfo("WARNING", outtxt_short)
self.pipelineframe = MiRSeqFrame(
self.notebook,
'miR-Seq', #self.pfamily.get(),
self.annotation,
global_info=self)
elif self.pfamily.get() == 'ChIPseq':
print('ChIPseq')
if not annotation in set1:
outtxt_short = "%s is not supported in this pipeline!" % (
annotation)
showinfo("WARNING", outtxt_short)
self.pipelineframe = ChIPSeqFrame(
self.notebook,
'ChIPseq', #self.pfamily.get(),
self.annotation,
global_info=self)
elif self.pfamily.get() == 'rnaseq':
print('rnaseq')
if not annotation in set1:
outtxt_short = "%s is not supported in this pipeline!" % (
annotation)
showinfo("WARNING", outtxt_short)
self.pipelineframe = RNASeqFrame(
self.notebook,
'RNAseq', #self.pfamily.get(),
self.annotation,
global_info=self)
elif self.pfamily.get() == 'scrnaseq':
print('scrnaseq')
if not annotation in set3:
outtxt_short = "%s is not supported in this pipeline!" % (
annotation)
showinfo("WARNING", outtxt_short)
self.pipelineframe = scRNASeqFrame(
self.notebook,
'scRNAseq', #self.pfamily.get(),
self.annotation,
global_info=self)
else:
return
pass
self.notebook.select(self.pipelineframe)
