def drive_s2():
slog('drive s2 away to -50 and atrans to 0')
sics.multiDrive({'s2': -50, 'atrans':0})
s2.value = sics.getValue('s2').getFloatData()
atrans.value = sics.getValue('atrans').getFloatData()
sics.execute('s2 fixed 1')
print 'Please check if s2 is fixed!'
def check_nvs_lambda(self, val):
timeout = 600
interval = 2
count = 0
while count < timeout :
try:
cur = sics.get_raw_value('nvs_lambda')
if sics.isInterrupt():
break
# pre = sics.get_raw_value('nvs_lambda precision')
pre = 0.1
if abs(cur - val) < pre:
log('wavelength is ' + str(cur))
return True
else:
try:
time.sleep(interval)
count += interval
except KeyboardInterrupt as ei:
log('Interrupted')
raise Exception, 'interrupted'
break;
except:
try:
time.sleep(interval)
count += interval
except KeyboardInterrupt as ei:
log('Interrupted')
raise Exception, 'interrupted'
break;
if sics.isInterrupt():
sics.clearInterrupt()
raise Exception, 'interrupted'
sics.execute('stopexe nvs_lambda')
log('WARNING: timeout in driving nvs_lambda, but choose to continue.')
def scan10(sample_position, collect_time, sample_name = None):
global __sampleMap__, __sampleNum__
if sample_position < 1 or sample_position > 10:
raise Exception, 'Invalid sample position, scan not run. Choose a position between 1 and 10 inclusive.'
else:
if not sample_name is None:
sics.execute('samplename ' + str(sample_name), 'scan')
cur_samx = __sampleMap__[__sampleNum__][sample_position]
# cur_samx = samx()
time.sleep(1)
log("Collection time set to " + str(collect_time) + " seconds")
# sics.execute('histmem mode time')
# sics.execute('histmem preset ' + str(collect_time))
# time.sleep(1)
log("Data collection for sample " + sample_name + " started")
# sics.execute("histmem start")
# sicsController = sics.getSicsController()
# while not sicsController.getServerStatus().equals(ServerStatus.COUNTING):
# time.sleep(0.3)
# while not sicsController.getServerStatus().equals(ServerStatus.EAGER_TO_EXECUTE):
# time.sleep(0.3)
# time.sleep(1)
# sics.execute('newfile HISTOGRAM_XYT')
# time.sleep(1)
# log("Saving data")
# sics.execute('save')
scan('samx', cur_samx, cur_samx, 1, scanMode.time, dataType.HISTOGRAM_XYT, collect_time)
time.sleep(2)
log(sics.get_base_filename() + ' updated')
log("Scan completed")
if not sample_name is None:
sics.execute('samplename {}', 'scan')
def startHistmem():
# sicsController = sics.getSicsController()
# histmemController = sicsController.findComponentController('/commands/histogram/histmem')
# sics.hset(histmemController, '/mode', 'unlimited')
log('starting histmem...')
sics.execute('histmem mode unlimited')
time.sleep(1.0)
sics.execute('histmem start')
def startHistmem():
slog('Starting histmem ...')
waitUntilSicsIs(ServerStatus.EAGER_TO_EXECUTE)
sics.execute('histmem mode unlimited')
time.sleep(1.0)
sics.execute('histmem start')
def scan_temp_field_FW(fieldList, mode, preset, tempSettleTime = 1, fieldSettleTime = 1):
# for wavelength in wavelengthList:
sics.execute('setvolt ' + str(10))
sleep(15)
for i in xrange(len(fieldList)):
pack = fieldList[i]
# driveAtt(attList[i])
# log('driving tc1_driveable=' + str(pack[0]))
value = str(pack[0])
log(value)
# sics.drive('tc1_driveable', value)
# log('waiting for temperature to settle')
# sleep(tempSettleTime)
fields = pack[1]
for j in xrange(len(fields)):
log('driving magnet1_driveable=' + str(0))
sics.drive('ma1_setpoint', 0)
sics.drive('tc1_driveable', 50)
log('waiting for temperature to settle')
log('driving magnet1_driveable=' + str(225))
sics.drive('ma1_setpoint', 225)
sics.drive('tc1_driveable', value)
log(value)
log('waiting for temperature to settle')
sleep(900)
field = fields[j][0]
log('driving magnet1_driveable=' + str(field))
sics.drive('ma1_setpoint', field)
log('waiting for field to settle')
sleep(fieldSettleTime)
e_fields = fields[j][1]
for k in xrange(len(e_fields)):
e_field = e_fields[k]
log('drive electronic field to ' + str(e_field))
# sics.execute('setvolt ' + str(500))
# sleep(15)
# sics.execute('setvolt ' + str(1000))
# sleep(15)
# sics.execute('setvolt ' + str(1500))
# sleep(10)
# sics.execute('setvolt ' + str(2000))
# sleep(10)
# sics.execute('setvolt ' + str(2500))
# sleep(1)
sics.execute('setvolt ' + str(e_field))
# prep_transmission()
# quokka.scan(scanMode.time, dataType.HISTOGRAM_XY, 120)
#
# prep_scattering()
log('start counting')
quokka.scan(mode, dataType.HISTOGRAM_XY, preset)
def scan_en():
aname = 'en'
try:
if DEBUGGING :
aname = 'dummy_motor'
except:
pass
axis_name.value = aname
sicsext.call_back = __load_experiment_data__
slog('scan ' + aname + ', ' + scan.value)
sics.execute('s2 fixed 1')
exec('sicsext.runbmonscan(\'' + aname + '\', ' + scan.value + ', 0, \'call_back()\')')
time.sleep(2)
fit_curve()
def resetTrip():
#print >> sys.stderr, '!!! detector tripped !!!'
log('!!! detector tripped !!!')
# drive to higher attenuation
if getAttValue() < 330:
log('adjusting attenuation')
driveAtt(getAttValue() + 30)
# reset fast shutter
# raise Exception('detector tripped - reset not supported')
sics.execute('hset ' + reset_trip + ' 1')
time.sleep(20)
def drive_a1a2_0():
if ei_old != Ei.value :
slog('drive Ei ' + str(Ei.value))
sics.execute('tasub update')
time.sleep(1)
try:
sics.drive('ei', Ei.value)
except:
pass
time.sleep(1)
while str(sics.getDeviceController('ei').getStatus()) == 'RUNNING':
time.sleep(0.5)
slog('drive a1 0 a2 0')
sics.multiDrive({'a1' : 0, 'a2' : 0})
def driveTesla(val, speed, wait_sec):
sics.execute("oxfordseths on")
time.sleep(35)
sics.execute("oxfordsetrate " + str(speed))
sics.execute("oxfordsetfield " + str(val))
time.sleep(wait_sec)
sics.execute("oxfordseths off")
time.sleep(35)
def driveTesla(val, speed, wait_sec):
sics.execute('oxfordseths on')
time.sleep(35)
sics.execute('oxfordsetrate ' + str(speed))
sics.execute('oxfordsetfield ' + str(val))
time.sleep(wait_sec)
sics.execute('oxfordseths off')
time.sleep(35)
def home_run():
print 'Run Home routine for all slits ...'
sics.execute('ps_left homerun 0')
sics.execute('ps_left homerun 1')
flag = False
acc_time = 0
while not flag and acc_time < 300:
time.sleep(1)
acc_time += 1
val = float(sicsext.runCommand('pa_left homerun'))
flag = val == 1
if flag:
print 'done'
drive_slits()
else:
raise Exception, 'Time out running the Home routine.'
def resetTrip(increase_att=True):
slog('Reset trip')
result = False
if increase_att:
# drive to higher attenuation
att = getAtt()
if att < max(ATT_VALUES):
driveAtt(att + 30)
result = True
else:
raise Exception('unable to increase attenuation in order to reset trip')
# reset fast shutter
sics.execute('hset /instrument/detector/reset_trip 1')
sleep(20) # interruptable
return result # only true if attenuation has been increased
def driveTesla(value, speed, wait_sec):
slog('Driving Tesla (value: %s, speed: %s) ...' % (value, speed))
waitUntilSicsIs(ServerStatus.EAGER_TO_EXECUTE)
sics.execute('oxfordseths on')
sleep(35) # interruptable sleep
sics.execute('oxfordsetrate %s' + speed)
sics.execute('oxfordsetfield %s' + value)
sleep(float(wait_sec))
sics.execute('oxfordseths off')
sleep(35)
def test_dhv1(self, key):
# Test drive
startingValue = getDhv1Value()
precision = 20
log("Test drive dhv1 to " + key + " ...")
sics.getSicsController().clearInterrupt()
sics.execute("dhv1 " + key)
# Wait for 6 sec
time.sleep(6)
hasInterrupted = sics.getSicsController().isInterrupted() == 1
# Stop test drive
log("Stopping test drive")
sics.execute("INT1712 3")
time.sleep(1)
currentValue = getDhv1Value()
# Don't go any further if someone has interrrupted the test drive
if hasInterrupted:
# log('Test drive was interrupted')
raise Exception, "dhv1 " + key + " interrupted"
# print ('currentValue: ' + str(currentValue) + ', startingValue: ' + str(startingValue));
# Test if the current value is within the precision (more than half of voltage step size, which is about half of 30V)
if (startingValue + precision >= currentValue) and (startingValue - precision <= currentValue):
log("Dhv1 needs to be reset")
sics.execute("dhv1 reset")
time.sleep(1)
# Actual drive
sics.getSicsController().clearInterrupt()
def test_dhv1(self, key):
# Test drive
startingValue = getDhv1Value()
precision = 20
log('Test drive dhv1 to ' + key + ' ...')
sics.getSicsController().clearInterrupt()
sics.execute('dhv1 ' + key)
# Wait for 6 sec
time.sleep(6)
hasInterrupted = sics.getSicsController().isInterrupted() == 1
# Stop test drive
log('Stopping test drive')
sics.execute('INT1712 3')
time.sleep(1)
currentValue = getDhv1Value()
# Don't go any further if someone has interrrupted the test drive
if hasInterrupted:
# log('Test drive was interrupted')
raise Exception, 'dhv1 ' + key + ' interrupted'
# print ('currentValue: ' + str(currentValue) + ', startingValue: ' + str(startingValue));
# Test if the current value is within the precision (more than half of voltage step size, which is about half of 30V)
if (startingValue + precision >=
currentValue) and (startingValue - precision <= currentValue):
log('Dhv1 needs to be reset')
sics.execute('dhv1 reset')
time.sleep(1)
# Actual drive
sics.getSicsController().clearInterrupt()
def driveHistmem(hmMode, preset):
controllerPath = '/commands/histogram/histmem'
sicsController = sics.getSicsController()
histmemController = sicsController.findComponentController(controllerPath)
sics.execute('hset ' + controllerPath + '/mode ' + hmMode.key, 'scan')
sics.execute('hset ' + controllerPath + '/preset ' + str(preset), 'scan')
sics.execute('hset ' + controllerPath + '/cmd start', 'scan')
log('Start histmem ...')
time.sleep(0.5)
histmemController.syncExecute()
time.sleep(0.8)
log('Histmem stopped')
def driveHistmem(hmMode, preset):
controllerPath = '/commands/histogram/histmem'
sicsController = sics.getSicsController()
histmemController = sicsController.findComponentController(controllerPath)
sics.execute('hset ' + controllerPath + '/mode ' + hmMode.key, 'scan')
sics.execute('hset ' + controllerPath + '/preset ' + str(preset), 'scan')
sics.execute('hset ' + controllerPath + '/cmd start', 'scan')
log('Start histmem ...')
time.sleep(0.5)
histmemController.syncExecute()
time.sleep(0.8)
log('Histmem stopped')
def driveHistmem(hmMode, preset):
controllerPath = "/commands/histogram/histmem"
sicsController = sics.getSicsController()
histmemController = sicsController.findComponentController(controllerPath)
sics.execute("hset " + controllerPath + "/mode " + hmMode.key, "scan")
sics.execute("hset " + controllerPath + "/preset " + str(preset), "scan")
sics.execute("hset " + controllerPath + "/cmd start", "scan")
log("Start histmem ...")
time.sleep(0.5)
histmemController.syncExecute()
time.sleep(0.8)
log("Histmem stopped")
def driveDhv1(action):
# Don't drive if it is already in position
startingValue = getDhv1Value()
if (action.key == 'up'
and startingValue >= 2350.0) or (action.key == 'down'
and startingValue == 0.0):
log('dhv1 is now at ' + str(startingValue) + ', no action is required')
return
# Test drive
log('Test drive dhv1 to ' + action.key + ' ...')
sics.getSicsController().clearInterrupt()
sics.execute('dhv1 ' + action.key)
# Wait for 6 sec
time.sleep(6)
hasInterrupted = sics.getSicsController().isInterrupted() == 1
# Stop test drive
log('Stopping test drive')
sics.execute('INT1712 3')
time.sleep(1)
currentValue = getDhv1Value()
# Don't go any further if someone has interrrupted the test drive
if hasInterrupted:
# log('Test drive was interrupted')
raise Exception
# print ('currentValue: ' + str(currentValue) + ', startingValue: ' + str(startingValue));
# Test if the current value is within the precision (more than half of voltage step size, which is about half of 30V)
precision = 20
if (startingValue + precision >=
currentValue) and (startingValue - precision <= currentValue):
log('Dhv1 needs to be reset')
sics.execute('dhv1 reset')
time.sleep(1)
# Actual drive
sics.getSicsController().clearInterrupt()
log('Driving dhv1 to ' + action.key + ' ...')
if action.key == 'up':
dhv1.up()
elif action.key == 'down':
dhv1.down()
elif action.key == 'reset':
dhv1.reset()
log('dhv1 is now at ' + str(getDhv1Value()))
def run_scan():
dnv = device.value
if dnv == None or dnv.strip() == '' :
raise Exception('device name can\'t be empty')
axis_name.value = dnv.strip()
stv = start.value
if stv == None or stv.strip() == '' :
raise Exception('start position can\'t be empty')
try:
float(stv)
except:
raise Exception('start position must be a value')
ssv = step_size.value
if ssv == None or ssv.strip() == '' :
raise Exception('step size can\'t be empty')
try:
float(ssv)
except:
raise Exception('step size must be a value')
nsv = no_steps.value
if nsv == None or nsv.strip() == '' :
raise Exception('number of steps can\'t be empty')
try:
float(nsv)
except:
raise Exception('number of steps must be a value')
mdv = mode.value
if mdv == None or mdv.strip() == '' :
raise Exception('count mode can\'t be empty')
psv = preset.value
if psv == None or psv.strip() == '' :
raise Exception('preset can\'t be empty')
cmd = 'bmonscan clear'
print cmd
sics.execute(cmd)
time.sleep(0.1)
cmd = 'bmonscan add ' + dnv + ' ' + stv + ' ' + ssv
print cmd
sics.execute(cmd)
time.sleep(0.1)
cmd = 'bmonscan run ' + nsv + ' ' + mdv + ' ' + psv
print cmd
sics.execute(cmd)
time.sleep(0.1)
def driveDhv1(action):
# Don't drive if it is already in position
startingValue = getDhv1Value()
if (action.key == 'up' and startingValue >= 2350.0) or (action.key == 'down' and startingValue == 0.0):
log('dhv1 is now at ' + str(startingValue) + ', no action is required')
return
# Test drive
log('Test drive dhv1 to ' + action.key + ' ...')
sics.getSicsController().clearInterrupt()
sics.execute('dhv1 ' + action.key)
# Wait for 6 sec
time.sleep(6)
hasInterrupted = sics.getSicsController().isInterrupted() == 1
# Stop test drive
log('Stopping test drive')
sics.execute('INT1712 3')
time.sleep(1)
currentValue = getDhv1Value()
# Don't go any further if someone has interrrupted the test drive
if hasInterrupted:
# log('Test drive was interrupted')
raise Exception
# print ('currentValue: ' + str(currentValue) + ', startingValue: ' + str(startingValue));
# Test if the current value is within the precision (more than half of voltage step size, which is about half of 30V)
precision = 20
if (startingValue + precision >= currentValue) and (startingValue - precision <= currentValue):
log('Dhv1 needs to be reset')
sics.execute('dhv1 reset')
time.sleep(1)
# Actual drive
sics.getSicsController().clearInterrupt()
log('Driving dhv1 to ' + action.key + ' ...')
if action.key == 'up':
dhv1.up()
elif action.key == 'down':
dhv1.down()
elif action.key == 'reset':
dhv1.reset()
log('dhv1 is now at ' + str(getDhv1Value()))
def initiate(info):
# parameters
title = strOrDefault(info.experimentTitle, "Unknown")
pnumber = strOrDefault(info.proposalNumber, "0")
users = strOrDefault(info.users, "Unknown")
emails = strOrDefault(info.emails, "Unknown")
phones = strOrDefault(info.phones, "Unknown")
sample_stage = str(info.sampleStage)
# update sics
sics.set('title', title)
sics.execute('hset /experiment/experiment_identifier ' + pnumber)
sics.set('user', users)
sics.execute('hset /user/email "%s"' % emails)
sics.execute('hset /user/phone "%s"' % phones)
# clear environment drive scripts
state.env_drive = dict()
setSampleStage(sample_stage)
def findSafeAttenuation(startingAttenuation):
# Sample at 90 (was 150) and 60 (was 120)
attenuation1 = 120
attenuation2 = 90
# Safety margin (ratio)
safety_margin = 1.02 # 2%
# First sampling
while not sics.getSicsController().getServerStatus().equals(ServerStatus.EAGER_TO_EXECUTE):
time.sleep(0.1)
driveAtt(attenuation1)
local_rate1, global_rate1 = determineAveragedRates()
thickness1 = thicknessTable[attenuation1]
log('local rate1 = ' + str(local_rate1))
log('global rate1 = ' + str(global_rate1))
# Second sampling
while not sics.getSicsController().getServerStatus().equals(ServerStatus.EAGER_TO_EXECUTE):
time.sleep(0.1)
driveAtt(attenuation2)
local_rate2, global_rate2 = determineAveragedRates()
thickness2 = thicknessTable[attenuation2]
log('local rate2 = ' + str(local_rate2))
log('global rate2 = ' + str(global_rate2))
# check that at least local or global rate is sufficient
if (local_rate2 <= local_rate1 * safety_margin) and (global_rate2 <= global_rate1 * safety_margin):
log('insufficient statistics - safe attenuation routine is used')
sics.execute('histmem mode time')
if (local_rate2 <= local_rateSafe) and (global_rate2 <= global_rateSafe):
setSafeAttenuation(attenuation2)
return None # to tell caller that attenuation value is set
elif (local_rate1 <= local_rateSafe) and (global_rate1 <= global_rateSafe):
setSafeAttenuation(attenuation1)
return None # to tell caller that attenuation value is set
else:
setSafeAttenuation(startingAttenuation)
return None # to tell caller that attenuation value is set
# find safe thickness
if local_rate2 > local_rate1 * safety_margin:
local_ratio = math.log(local_rate2 / local_rate1) / (thickness1 - thickness2)
local_offset = math.log(local_rate1 / local_rateSafe) / local_ratio
if local_offset < 0:
local_thicknessSafe = thickness1 + local_offset
else:
local_thicknessSafe = thickness1
log('local ratio = ' + str(local_ratio))
else:
local_thicknessSafe = 0
if global_rate2 > global_rate1 * safety_margin:
global_ratio = math.log(global_rate2 / global_rate1) / (thickness1 - thickness2)
global_offset = math.log(global_rate1 / global_rateSafe) / global_ratio
if global_offset < 0:
global_thicknessSafe = thickness1 + global_offset
else:
global_thicknessSafe = thickness1
log('global ratio = ' + str(global_ratio))
else:
global_thicknessSafe = 0
# final safe thickness
thicknessSafe = max([0, local_thicknessSafe, global_thicknessSafe])
log('safe thickness = ' + str(thicknessSafe))
# find corresponding attenuation angle
suggestedAttAngle = 330
for item in thicknessTable.items():
attAngle = item[0]
thickness = item[1]
if (thicknessSafe <= thickness) and (suggestedAttAngle > attAngle):
suggestedAttAngle = attAngle
log('suggested attenutaion angle = ' + str(suggestedAttAngle))
return suggestedAttAngle
def stopHistmem():
sicsController = sics.getSicsController()
histmemController = sicsController.findComponentController('/commands/histogram/histmem')
log('stopping histmem ...')
sics.execute('histmem stop')
def publishFinishTime(time):
sics.execute('hset /experiment/gumtree_time_estimate %i' % time, 'status')
def stopHistmem():
sicsController = sics.getSicsController()
histmemController = sicsController.findComponentController("/commands/histogram/histmem")
log("stopping histmem ...")
sics.execute("histmem stop")
time.sleep(0.5)
def findSafeAttenuation(startingAttenuation):
# Sample at 90 (was 150) and 60 (was 120)
attenuation1 = 180
attenuation2 = 150
# Safety margin (ratio)
safety_margin = 1.02 # 2%
# First sampling
while not sics.getSicsController().getServerStatus().equals(
ServerStatus.EAGER_TO_EXECUTE):
time.sleep(0.1)
driveAtt(attenuation1)
local_rate1, total_rate1 = determineAveragedRates()
thickness1 = thicknessTable[attenuation1]
log('local rate1 = ' + str(local_rate1))
log('total rate1 = ' + str(total_rate1))
# Second sampling
while not sics.getSicsController().getServerStatus().equals(
ServerStatus.EAGER_TO_EXECUTE):
time.sleep(0.1)
driveAtt(attenuation2)
local_rate2, total_rate2 = determineAveragedRates()
thickness2 = thicknessTable[attenuation2]
log('local rate2 = ' + str(local_rate2))
log('total rate2 = ' + str(total_rate2))
# check that at least local or total rate is sufficient
if (local_rate2 <= local_rate1 * safety_margin) and (
total_rate2 <= total_rate1 * safety_margin):
log('insufficient statistics - safe attenuation routine is used')
sics.execute('histmem mode time')
if (local_rate2 <= local_rateSafe) and (total_rate2 <= total_rateSafe):
setSafeAttenuation(attenuation2)
return None, attenuation1 # to tell caller that attenuation value is set
elif (local_rate1 <= local_rateSafe) and (total_rate1 <=
total_rateSafe):
setSafeAttenuation(attenuation1)
return None, attenuation1 # to tell caller that attenuation value is set
else:
setSafeAttenuation(startingAttenuation)
return None, startingAttenuation # to tell caller that attenuation value is set
# find safe thickness
if local_rate2 > local_rate1 * safety_margin:
local_ratio = math.log(
local_rate2 / local_rate1) / (thickness1 - thickness2)
local_offset = math.log(local_rate1 / local_rateSafe) / local_ratio
if local_offset < 0:
local_thicknessSafe = thickness1 + local_offset
else:
local_thicknessSafe = thickness1
log('local ratio = ' + str(local_ratio))
else:
local_thicknessSafe = 0
if total_rate2 > total_rate1 * safety_margin:
total_ratio = math.log(
total_rate2 / total_rate1) / (thickness1 - thickness2)
total_offset = math.log(total_rate1 / total_rateSafe) / total_ratio
if total_offset < 0:
total_thicknessSafe = thickness1 + total_offset
else:
total_thicknessSafe = thickness1
log('total ratio = ' + str(total_ratio))
else:
total_thicknessSafe = 0
# final safe thickness
thicknessSafe = max([0, local_thicknessSafe, total_thicknessSafe])
log('safe thickness = ' + str(thicknessSafe))
# find corresponding attenuation angle
suggestedAttAngle = 330
for item in thicknessTable.items():
attAngle = item[0]
thickness = item[1]
if (thicknessSafe <= thickness) and (suggestedAttAngle > attAngle):
suggestedAttAngle = attAngle
log('suggested attenutaion angle = ' + str(suggestedAttAngle))
return suggestedAttAngle, attenuation1
def count(mode, dataType, preset, force='true', saveType=saveType.save):
controllerPath = '/commands/scan/runscan'
sicsController = sics.getSicsController()
scanController = sicsController.findComponentController(controllerPath)
sics.execute('hset ' + controllerPath + '/scan_variable ' + deviceName, 'scan')
sics.execute('hset ' + controllerPath + '/scan_start 0', 'scan')
sics.execute('hset ' + controllerPath + '/scan_stop 0', 'scan')
sics.execute('hset ' + controllerPath + '/numpoints 1', 'scan')
if (scanMode.key == 'monitor'):
sics.execute('hset ' + controllerPath + '/mode MONITOR_1', 'scan')
else:
sics.execute('hset ' + controllerPath + '/mode ' + scanMode.key, 'scan')
sics.execute('hset ' + controllerPath + '/preset ' + str(preset), 'scan')
sics.execute('hset ' + controllerPath + '/datatype ' + dataType.key, 'scan')
sics.execute('hset ' + controllerPath + '/savetype ' + saveType.key, 'scan')
sics.execute('hset ' + controllerPath + '/force ' + force, 'scan')
# repeat until successful
while True:
time.sleep(1)
while not sics.getSicsController().getServerStatus().equals(ServerStatus.EAGER_TO_EXECUTE):
time.sleep(0.1)
scanController.syncExecute()
break
# Get output filename
filenameController = sicsController.findDeviceController('datafilename')
savedFilename = filenameController.getValue().getStringData()
log('Saved to ' + savedFilename)
return savedFilename
# The type can be string, int, float, bool, file.
cact = Act('', 'The alignment is finished.')
G1 = Group('Devices Status')
m1 = Par('float', sics.getValue('m1').getFloatData())
m2 = Par('float', sics.getValue('m2').getFloatData())
s1 = Par('float', sics.getValue('s1').getFloatData())
s2 = Par('float', sics.getValue('s2').getFloatData())
a1 = Par('float', sics.getValue('a1').getFloatData())
a2 = Par('float', sics.getValue('a2').getFloatData())
Ei = Par('float', sics.getValue('ei').getFloatData())
Ef = Par('float', sics.getValue('ef').getFloatData())
En = Par('float', sics.getValue('en').getFloatData())
G1.add(m1, m2, s1, s2, a1, a2, Ei, Ef, En)
sics.execute('s2 fixed -1')
pact = Act('previous_step()', '<- Previous Step')
def previous_step():
load_script(previous_file)
# load_script()
def fit_curve():
global Plot1
ds = Plot1.ds
if ds is None or len(ds) == 0:
slog('Error: no curve to fit in Plot1.')
return
for d in ds:
if d.title == 'fitting':
def scan(scanMode, dataType, preset, force='true', saveType=saveType.save):
controllerPath = '/commands/scan/runscan'
sicsController = sics.getSicsController()
scanController = sicsController.findComponentController(controllerPath)
# Configuring scan properties
# sics.hset(scanController, '/scan_variable', DEVICE_SAMX)
# sics.hset(scanController, '/scan_start', getSampleHolderPosition())
# sics.hset(scanController, '/scan_stop', getSampleHolderPosition())
# sics.hset(scanController, '/numpoints', 1)
# # Hack to fix monitor selection in scan
# if (scanMode.key == 'monitor'):
# sics.hset(scanController, '/mode', 'MONITOR_1')
# else:
# sics.hset(scanController, '/mode', scanMode.key)
# sics.hset(scanController, '/preset', preset)
# sics.hset(scanController, '/datatype', dataType.key)
# sics.hset(scanController, '/savetype', saveType.key)
# sics.hset(scanController, '/force', force)
sics.execute('hset ' + controllerPath + '/scan_variable dummy_motor', 'scan')
sics.execute('hset ' + controllerPath + '/scan_start 0', 'scan')
sics.execute('hset ' + controllerPath + '/scan_stop 0', 'scan')
sics.execute('hset ' + controllerPath + '/numpoints 1', 'scan')
if (scanMode.key == 'monitor'):
sics.execute('hset ' + controllerPath + '/mode MONITOR_1', 'scan')
else:
sics.execute('hset ' + controllerPath + '/mode ' + scanMode.key, 'scan')
sics.execute('hset ' + controllerPath + '/preset ' + str(preset), 'scan')
sics.execute('hset ' + controllerPath + '/datatype ' + dataType.key, 'scan')
sics.execute('hset ' + controllerPath + '/savetype ' + saveType.key, 'scan')
sics.execute('hset ' + controllerPath + '/force ' + force, 'scan')
# repeat until successful
while True:
# Wait 1 sec to make the setting settle
time.sleep(1)
while not sics.getSicsController().getServerStatus().equals(ServerStatus.EAGER_TO_EXECUTE):
time.sleep(0.1)
# Synchronously run scan
if not hasTripped():
log("starting scan")
scanController.syncExecute()
if not hasTripped():
break; # successful acquisition
resetTrip()
# Get output filename
filenameController = sicsController.findDeviceController('datafilename')
savedFilename = filenameController.getValue().getStringData()
log('Saved to ' + savedFilename)
return savedFilename
def scan(scanMode, dataType, preset, force='true', saveType=saveType.save):
controllerPath = '/commands/scan/runscan'
sicsController = sics.getSicsController()
scanController = sicsController.findComponentController(controllerPath)
# Configuring scan properties
# sics.hset(scanController, '/scan_variable', DEVICE_SAMX)
# sics.hset(scanController, '/scan_start', getSampleHolderPosition())
# sics.hset(scanController, '/scan_stop', getSampleHolderPosition())
# sics.hset(scanController, '/numpoints', 1)
# # Hack to fix monitor selection in scan
# if (scanMode.key == 'monitor'):
# sics.hset(scanController, '/mode', 'MONITOR_1')
# else:
# sics.hset(scanController, '/mode', scanMode.key)
# sics.hset(scanController, '/preset', preset)
# sics.hset(scanController, '/datatype', dataType.key)
# sics.hset(scanController, '/savetype', saveType.key)
# sics.hset(scanController, '/force', force)
sics.execute('hset /instrument/dummy_motor 0', 'general')
sics.execute('hset /instrument/dummy_motor 1', 'scan')
sics.execute('hset ' + controllerPath + '/datatype ' + dataType.key,
'general')
sics.execute('hset ' + controllerPath + '/savetype ' + saveType.key,
'general')
sics.execute('hset ' + controllerPath + '/force ' + force, 'general')
sics.execute('hset ' + controllerPath + '/scan_variable dummy_motor',
'scan')
sics.execute('hset ' + controllerPath + '/scan_start 0', 'scan')
sics.execute('hset ' + controllerPath + '/scan_stop 0', 'scan')
sics.execute('hset ' + controllerPath + '/numpoints 1', 'scan')
if (scanMode.key == 'monitor'):
sics.execute('hset ' + controllerPath + '/mode MONITOR_1', 'scan')
else:
sics.execute('hset ' + controllerPath + '/mode ' + scanMode.key,
'scan')
sics.execute('hset ' + controllerPath + '/preset ' + str(preset), 'scan')
sics.execute('hset ' + controllerPath + '/datatype ' + dataType.key,
'scan')
sics.execute('hset ' + controllerPath + '/savetype ' + saveType.key,
'scan')
sics.execute('hset ' + controllerPath + '/force ' + force, 'scan')
sics.execute('hset /instrument/dummy_motor 2', 'general')
sics.execute('hset /instrument/dummy_motor 3', 'scan')
# Wait 1 sec to make the setting settle
time.sleep(2)
# Synchronously run scan
scanController.syncExecute()
sics.execute('hset /instrument/dummy_motor 4', 'general')
sics.execute('hset /instrument/dummy_motor 5', 'scan')
# Get output filename
filenameController = sicsController.findDeviceController('datafilename')
savedFilename = filenameController.getValue().getStringData()
log('Saved to ' + savedFilename)
return savedFilename
def scan(scanMode, dataType, preset, force='true', saveType=saveType.save):
controllerPath = '/commands/scan/runscan'
sicsController = sics.getSicsController()
scanController = sicsController.findComponentController(controllerPath)
# Configuring scan properties
# sics.hset(scanController, '/scan_variable', DEVICE_SAMX)
# sics.hset(scanController, '/scan_start', getSampleHolderPosition())
# sics.hset(scanController, '/scan_stop', getSampleHolderPosition())
# sics.hset(scanController, '/numpoints', 1)
# # Hack to fix monitor selection in scan
# if (scanMode.key == 'monitor'):
# sics.hset(scanController, '/mode', 'MONITOR_1')
# else:
# sics.hset(scanController, '/mode', scanMode.key)
# sics.hset(scanController, '/preset', preset)
# sics.hset(scanController, '/datatype', dataType.key)
# sics.hset(scanController, '/savetype', saveType.key)
# sics.hset(scanController, '/force', force)
sics.execute('hset ' + controllerPath + '/scan_variable dummy_motor', 'scan')
sics.execute('hset ' + controllerPath + '/scan_start 0', 'scan')
sics.execute('hset ' + controllerPath + '/scan_stop 0', 'scan')
sics.execute('hset ' + controllerPath + '/numpoints 1', 'scan')
if (scanMode.key == 'monitor'):
sics.execute('hset ' + controllerPath + '/mode MONITOR_1', 'scan')
else:
sics.execute('hset ' + controllerPath + '/mode ' + scanMode.key, 'scan')
sics.execute('hset ' + controllerPath + '/preset ' + str(preset), 'scan')
sics.execute('hset ' + controllerPath + '/datatype ' + dataType.key, 'scan')
sics.execute('hset ' + controllerPath + '/savetype ' + saveType.key, 'scan')
sics.execute('hset ' + controllerPath + '/force ' + force, 'scan')
# repeat until successful
while True:
# Wait 1 sec to make the setting settle
time.sleep(1)
while not sics.getSicsController().getServerStatus().equals(ServerStatus.EAGER_TO_EXECUTE):
time.sleep(0.1)
# Synchronously run scan
if not hasTripped():
log("starting scan")
scanController.syncExecute()
if not hasTripped():
break; # successful acquisition
resetTrip()
# Get output filename
filenameController = sicsController.findDeviceController('datafilename')
savedFilename = filenameController.getValue().getStringData()
log('Saved to ' + savedFilename)
return savedFilename
def count(mode, dataType, preset, force='true', saveType=saveType.save):
controllerPath = '/commands/scan/runscan'
sicsController = sics.getSicsController()
scanController = sicsController.findComponentController(controllerPath)
sics.execute('hset ' + controllerPath + '/scan_variable ' + deviceName,
'scan')
sics.execute('hset ' + controllerPath + '/scan_start 0', 'scan')
sics.execute('hset ' + controllerPath + '/scan_stop 0', 'scan')
sics.execute('hset ' + controllerPath + '/numpoints 1', 'scan')
if (scanMode.key == 'monitor'):
sics.execute('hset ' + controllerPath + '/mode MONITOR_1', 'scan')
else:
sics.execute('hset ' + controllerPath + '/mode ' + scanMode.key,
'scan')
sics.execute('hset ' + controllerPath + '/preset ' + str(preset), 'scan')
sics.execute('hset ' + controllerPath + '/datatype ' + dataType.key,
'scan')
sics.execute('hset ' + controllerPath + '/savetype ' + saveType.key,
'scan')
sics.execute('hset ' + controllerPath + '/force ' + force, 'scan')
# repeat until successful
while True:
time.sleep(1)
while not sics.getSicsController().getServerStatus().equals(
ServerStatus.EAGER_TO_EXECUTE):
time.sleep(0.1)
scanController.syncExecute()
break
# Get output filename
filenameController = sicsController.findDeviceController('datafilename')
savedFilename = filenameController.getValue().getStringData()
log('Saved to ' + savedFilename)
return savedFilename
def scan(mode, preset):
controllerPath = '/commands/scan/runscan'
if mode == ACQUISITION_MODE.unlimited:
sics.execute('hset ' + controllerPath + '/mode unlimited', 'scan')
elif mode == ACQUISITION_MODE.time:
sics.execute('hset ' + controllerPath + '/mode time', 'scan')
elif mode == ACQUISITION_MODE.counts:
sics.execute('hset ' + controllerPath + '/mode counts', 'scan')
elif mode == ACQUISITION_MODE.bm_counts:
sics.execute('hset ' + controllerPath + '/mode MONITOR_1', 'scan')
else:
raise Exception('unsupported scan mode: ' + mode)
# set preset
if preset is not None:
sics.execute('hset ' + controllerPath + '/preset %s' % preset, 'scan')
elif mode != ACQUISITION_MODE.unlimited:
raise Exception('preset is required for mode: ' + mode)
# ensure that ba is disabled
sics.execute('histmem ba disable', 'scan')
syncScan(controllerPath)
def syncScan(controllerPath):
# configuring scan properties
sics.execute('hset ' + controllerPath + '/datatype ' + 'HISTOGRAM_XY',
'scan')
sics.execute('hset ' + controllerPath + '/savetype ' + 'save', 'scan')
sics.execute('hset ' + controllerPath + '/force ' + 'true', 'scan')
# dummy scan
sics.execute('hset ' + controllerPath + '/scan_variable dummy_motor',
'scan')
sics.execute('hset ' + controllerPath + '/scan_start ' + '0', 'scan')
sics.execute('hset ' + controllerPath + '/scan_stop ' + '0', 'scan')
sics.execute('hset ' + controllerPath + '/numpoints ' + '1', 'scan')
# wait to make the settings settle
time.sleep(1)
waitUntilSicsIs(ServerStatus.EAGER_TO_EXECUTE)
# synchronously run scan
sicsController = sics.getSicsController()
scanController = sicsController.findComponentController(controllerPath)
scanController.syncExecute()
def drive(self):
if self.__is_dirty__:
driveAtt(330)
else:
return
try:
sics.clearInterrupt()
log('starting configuration')
if self.need_drive_det():
########### below code drop dhv1 and select beam stop together ###########
precision = 20
safe_voltage = 800
working_voltage = 2100
startingValue = getDhv1()
if startingValue > safe_voltage:
self.test_dhv1('down')
startingValue = getDhv1()
log('Driving dhv1 to down ...')
sics.execute('dhv1 down')
time.sleep(1)
if not self.bs is None:
selBs(self.bs)
if startingValue > safe_voltage:
time_count = 0
time_out = 30
while getDhv1() == startingValue and time_count < time_out:
time.sleep(0.5)
time_count += 0.5
if getDhv1() == startingValue:
raise Exception, 'failed to start dropping dhv1'
time_count = 0
time_out = 600
while getDhv1() > safe_voltage and time_count < time_out:
time.sleep(0.5)
time_count += 0.5
if getDhv1() > safe_voltage:
raise Exception, 'time out dropping dhv1'
log('dhv1 is now down')
########### below drive det and other motors ###########
self.multi_drive()
########### below code raise dhv1 and drive guide together ###########
self.test_dhv1('up')
startingValue = getDhv1()
log('Driving dhv1 to up ...')
sics.execute('dhv1 up')
time.sleep(1)
if self.need_drive_guide():
driveGuide(self.guide)
time_count = 0
time_out = 30
while getDhv1() == startingValue and time_count < time_out:
time.sleep(0.5)
time_count += 0.5
if getDhv1() == startingValue:
raise Exception, 'failed to start raising dhv1'
time_count = 0
time_out = 600
while getDhv1() < working_voltage and time_count < time_out:
time.sleep(0.5)
time_count += 0.5
if getDhv1() < working_voltage:
raise Exception, 'time out raising dhv1'
log('dhv1 is now up')
self.multi_set()
else:
if not self.bs is None:
selBs(self.bs)
if self.need_drive_guide():
driveGuide(self.guide)
self.multi_drive()
self.multi_set()
finally:
self.clear()
while sics.getStatus() != 'EAGER TO EXECUTE':
time.sleep(0.3)
sics.handleInterrupt()
log('configuration is finished')
def stopHistmem():
sicsController = sics.getSicsController()
histmemController = sicsController.findComponentController('/commands/histogram/histmem')
log('stopping histmem ...')
sics.execute('histmem stop')
time.sleep(0.5)
def startScan(configModel):
''' setup '''
scanVariable = configModel.scanVariable
crystal = configModel.crystal
mode = configModel.mode
MainDeadTime = 1.08E-6
TransDeadTime = 1.08E-6
if 'Si111' in crystal:
empLevel = 0.3
bkgLevel = 0.277
dOmega = 2.3E-6
gDQv = 0.0586
gDQh = 0
wavelength = 4.74
TransmissionTube = 10
TransBackground = 0 # counts per second
elif 'Si311' in crystal:
empLevel = 0.34
bkgLevel = 0.333
dOmega = 4.6E-7
gDQv = 0.117
gDQh = 0
wavelength = 2.37
TransmissionTube = 9
TransBackground = 0 # counts per second
else:
print 'selected crystal is invalid'
return
''' angles '''
scan = configModel.scan
scan_angleMin = builtin_min(scan['angles'])
scan_angleMax = builtin_max(scan['angles'])
if ('m1om' in scanVariable) or ('m2om' in scanVariable):
tolerance = 2
approved = False
if 'Si111' in crystal:
if (180 - tolerance <= scan_angleMin) and (scan_angleMax <=
180 + tolerance):
approved = True
elif 'Si311' in crystal:
if (0 - tolerance <= scan_angleMin) and (scan_angleMax <=
0 + tolerance):
approved = True
if not approved:
print 'angle out of range'
return
''' execution '''
sics.execute('hset user/name ' + configModel.user_name)
sics.execute('hset user/email ' + configModel.user_email)
sics.execute('hset sample/name ' + configModel.sample_name)
sics.execute('hset sample/description ' + configModel.sample_description)
sics.execute('hset sample/thickness %g' % configModel.sample_thickness)
sics.execute('hset experiment/bkgLevel %g' % bkgLevel)
sics.execute('hset experiment/empLevel %g' % empLevel)
sics.execute('hset instrument/detector/MainDeadTime %g' % MainDeadTime)
sics.execute('hset instrument/detector/TransDeadTime %g' % TransDeadTime)
sics.execute('hset instrument/detector/TransBackground %g' %
TransBackground)
sics.execute('hset instrument/detector/TransmissionTube %i' %
TransmissionTube)
sics.execute('hset instrument/crystal/dOmega %g' % dOmega)
sics.execute('hset instrument/crystal/gDQv %g' % gDQv)
sics.execute('hset instrument/crystal/gDQh %g' % gDQh)
sics.execute('hset instrument/crystal/wavelength %g' % wavelength)
sics.execute('hset instrument/crystal/scan_variable ' + scanVariable)
sicsController = sics.getSicsController()
# slits
def getSlitValues(gap, offset, a0, b0, aOpen, bOpen):
if gap == 'fully opened':
return (aOpen, bOpen)
if gap == 'fully closed':
gap = -5.0
offset = 0.0
a = a0 + 0.5 * float(gap) + float(offset)
b = b0 - 0.5 * float(gap) + float(offset)
return (a, b)
ss1vg = configModel.ss1vg
ss1vo = configModel.ss1vo
ss1hg = configModel.ss1hg
ss1ho = configModel.ss1ho
ss2vg = configModel.ss2vg
ss2vo = configModel.ss2vo
ss2hg = configModel.ss2hg
ss2ho = configModel.ss2ho
(ss1u, ss1d) = getSlitValues(ss1vg, ss1vo, ss1u0, ss1d0, 35.8, -38.8)
(ss1r, ss1l) = getSlitValues(ss1hg, ss1ho, ss1r0, ss1l0, 57.0, -58.0)
(ss2u, ss2d) = getSlitValues(ss2vg, ss2vo, ss2u0, ss2d0, 37.0, -39.5)
(ss2r, ss2l) = getSlitValues(ss2hg, ss2ho, ss2r0, ss2l0, 35.0, -35.0)
# apply slits
run = {}
run['ss1u'] = ss1u
run['ss1d'] = ss1d
run['ss1r'] = ss1r
run['ss1l'] = ss1l
run['ss2u'] = ss2u
run['ss2d'] = ss2d
run['ss2r'] = ss2r
run['ss2l'] = ss2l
sics.multiDrive(run)
time.sleep(2)
while not sicsController.getServerStatus().equals(
ServerStatus.EAGER_TO_EXECUTE):
time.sleep(0.1)
'''
sics.execute('run ss1u %.2f' % ss1u)
sics.execute('run ss1d %.2f' % ss1d)
sics.execute('run ss1r %.2f' % ss1r)
sics.execute('run ss1l %.2f' % ss1l)
sics.execute('run ss2u %.2f' % ss2u)
sics.execute('run ss2d %.2f' % ss2d)
sics.execute('run ss2r %.2f' % ss2r)
sics.execute('run ss2l %.2f' % ss2l)
'''
# load sample positions
sam_positions = str(configModel.sam_position)
if (len(sam_positions) == 0) or (sam_positions == 'fixed'):
samz_list = [None]
else:
samz_list = []
pos2samz = {}
pos2samz['1'] = 33.5
pos2samz['2'] = 178.5
pos2samz['3'] = 323.5
pos2samz['4'] = 468.5
pos2samz['5'] = 613.5
pos2samz['1 top'] = 17.4
pos2samz['1 bottom'] = 77.7
pos2samz['2 top'] = 163.5
pos2samz['2 bottom'] = 223.1
pos2samz['3 top'] = 308.0
pos2samz['3 bottom'] = 368.1
pos2samz['4 top'] = 454.1
pos2samz['4 bottom'] = 513.6
pos2samz['5 top'] = 598.2
pos2samz['5 bottom'] = 658.0
samz_list.append(pos2samz[sam_positions])
'''
for range in filter(None, sam_positions.split(',')):
rangeItems = range.split('-')
if ('' in rangeItems) or (len(rangeItems) < 1) or (len(rangeItems) > 2):
raise Exception('format in "Sample Position" is incorrect')
if len(rangeItems) == 1:
samz_list.append(pos2samz[int(rangeItems[0])])
else:
for i in xrange(int(rangeItems[0]), int(rangeItems[1])+1):
samz_list.append(pos2samz[i])
if len(samz_list) == 0:
samz_list = [0.0]
'''
for samz in samz_list:
sics.execute('histmem stop')
time.sleep(3)
sics.execute('histmem mode time')
if samz is not None:
print 'run samz %.2f' % samz
sics.execute('run samz %.2f' % samz)
# sics.execute('prun samz 2' % samz) !!!
time.sleep(1)
while not sicsController.getServerStatus().equals(
ServerStatus.EAGER_TO_EXECUTE):
time.sleep(0.1)
sics.execute('newfile HISTOGRAM_XYT')
#sics.execute('autosave 60') # 60 seconds
time.sleep(1)
# start/stop hmm
if mode == 'count_roi':
sics.execute('histmem preset %i' % 1)
time.sleep(1)
sics.execute('histmem start')
time.sleep(5)
while not sicsController.getServerStatus().equals(
ServerStatus.EAGER_TO_EXECUTE):
time.sleep(0.1)
sics.execute('histmem stop')
print 'frames:', len(scan['angles'])
for frame_index in xrange(len(scan['angles'])):
angle = scan['angles'][frame_index]
preset = scan['presets'][frame_index]
maxTime = scan['maxTimes'][frame_index]
print 'run %s %.6f' % (scanVariable, angle)
sics.execute('run %s %.6f' % (scanVariable, angle))
time.sleep(10)
while not sicsController.getServerStatus().equals(
ServerStatus.EAGER_TO_EXECUTE):
time.sleep(0.1)
print 'run done'
time.sleep(1)
print 'histmem start'
while True:
if mode == 'count_roi':
sics.execute('histmem preset %i' % maxTime)
else:
sics.execute('histmem preset %i' % preset)
time.sleep(5)
sics.execute('histmem start')
time.sleep(5)
if mode == 'count_roi':
print 'count_roi'
time.sleep(configModel.min_time)
count_roi = 0
while not sicsController.getServerStatus().equals(
ServerStatus.EAGER_TO_EXECUTE):
try:
count_roi = int(
sicsext.runCommand(
'hmm configure num_events_filled_to_count_roi'
))
print count_roi
if count_roi > preset:
print count_roi
print 'reached desired count_roi'
sics.execute('histmem pause')
time.sleep(1)
break
except:
pass
time.sleep(0.5)
break
else:
while not sicsController.getServerStatus().equals(
ServerStatus.EAGER_TO_EXECUTE):
time.sleep(0.1)
valid = False
for i in xrange(10):
time.sleep(1)
detector_time = sics.getValue(
'/instrument/detector/time').getFloatData()
valid = (detector_time >= preset - 1) or (
detector_time >= preset * 0.90)
if valid:
break
print 'detector_time:', detector_time
if valid:
break
else:
print 'scan was invalid and needs to be repeated'
#sics.execute('histmem stop')
sics.execute('save %i' % frame_index)
frame_index += 1
print 'histmem done'
sics.execute('newfile clear')
#sics.execute('autosave 0') # disable autosave
# Get output filename
filenameController = sicsController.findDeviceController(
'datafilename')
savedFilename = filenameController.getValue().getStringData()
print 'saved:', savedFilename
print 'done'
print
def findSafeAttenuation(startingAttenuation):
# Sample at 90 (was 150) and 60 (was 120)
attenuation1 = 120
attenuation2 = 90
# Safety margin (ratio)
safety_margin = 1.02 # 2%
# First sampling
while not sics.getSicsController().getServerStatus().equals(ServerStatus.EAGER_TO_EXECUTE):
time.sleep(0.1)
driveAtt(attenuation1)
local_rate1, global_rate1 = determineAveragedRates()
thickness1 = thicknessTable[attenuation1]
if hasTripped():
while hasTripped():
resetTrip()
local_rate, global_rate = determineAveragedRates(max_samples=3, log_success=False)
log('local rate = ' + str(local_rate))
log('global rate = ' + str(global_rate))
return None # to tell caller that attenuation value is set
log('local rate1 = ' + str(local_rate1))
log('global rate1 = ' + str(global_rate1))
# Second sampling
while not sics.getSicsController().getServerStatus().equals(ServerStatus.EAGER_TO_EXECUTE):
time.sleep(0.1)
driveAtt(attenuation2)
local_rate2, global_rate2 = determineAveragedRates()
thickness2 = thicknessTable[attenuation2]
if hasTripped():
while hasTripped():
resetTrip()
local_rate, global_rate = determineAveragedRates(max_samples=3, log_success=False)
log('local rate = ' + str(local_rate))
log('global rate = ' + str(global_rate))
return None # to tell caller that attenuation value is set
log('local rate2 = ' + str(local_rate2))
log('global rate2 = ' + str(global_rate2))
# check that at least local or global rate is sufficient
if (local_rate2 <= local_rate1 * safety_margin) and (global_rate2 <= global_rate1 * safety_margin):
log('insufficient statistics - safe attenuation routine is used')
sics.execute('histmem mode time')
if (local_rate2 <= local_rateSafe) and (global_rate2 <= global_rateSafe):
setSafeAttenuation(attenuation2)
return None # to tell caller that attenuation value is set
elif (local_rate1 <= local_rateSafe) and (global_rate1 <= global_rateSafe):
setSafeAttenuation(attenuation1)
return None # to tell caller that attenuation value is set
else:
setSafeAttenuation(startingAttenuation)
return None # to tell caller that attenuation value is set
# find safe thickness
if local_rate2 > local_rate1 * safety_margin:
local_ratio = math.log(local_rate2 / local_rate1) / (thickness1 - thickness2)
local_offset = math.log(local_rate1 / local_rateSafe) / local_ratio
if local_offset < 0:
local_thicknessSafe = thickness1 + local_offset * 0.90 # 90% for safety
else:
local_thicknessSafe = thickness1
log('local ratio = ' + str(local_ratio))
else:
local_thicknessSafe = 0
if global_rate2 > global_rate1 * safety_margin:
global_ratio = math.log(global_rate2 / global_rate1) / (thickness1 - thickness2)
global_offset = math.log(global_rate1 / global_rateSafe) / global_ratio
if global_offset < 0:
global_thicknessSafe = thickness1 + global_offset * 0.90 # 90% for safety
else:
global_thicknessSafe = thickness1
log('global ratio = ' + str(global_ratio))
else:
global_thicknessSafe = 0
# final safe thickness
thicknessSafe = max([0, local_thicknessSafe, global_thicknessSafe])
log('safe thickness = ' + str(thicknessSafe))
# find corresponding attenuation angle
suggestedAttAngle = 330
for item in thicknessTable.items():
attAngle = item[0]
thickness = item[1]
if (thicknessSafe <= thickness) and (suggestedAttAngle > attAngle):
suggestedAttAngle = attAngle
# try to improve attenuation if possible
if suggestedAttAngle > 0:
setSafeAttenuation(suggestedAttAngle)
return None # to tell caller that attenuation value is set
log('suggested attenutaion angle = ' + str(suggestedAttAngle))
return suggestedAttAngle
def scanBA(min_time, max_time, counts, bm_counts):
def getIntOrDefault(value, default):
if value is not None:
return int(value)
else:
return default
controllerPath = '/commands/scan/runscan'
sics.execute('hset ' + controllerPath + '/mode unlimited', 'scan')
# always reset the ba properties before setting up new values
sics.execute('histmem ba reset', 'scan')
sics.execute('histmem ba roi total', 'scan')
sics.execute('histmem ba monitor 1', 'scan')
sics.execute('histmem ba mintime %i' % getIntOrDefault(min_time, 0),
'scan')
sics.execute('histmem ba maxtime %i' % getIntOrDefault(max_time, -1),
'scan')
sics.execute('histmem ba maxdetcount %i' % getIntOrDefault(counts, -1),
'scan')
sics.execute('histmem ba maxbmcount %i' % getIntOrDefault(bm_counts, -1),
'scan')
try:
sics.execute('histmem ba enable', 'scan')
syncScan(controllerPath)
finally:
# ensure that ba is disabled afterwards
sics.execute('histmem ba disable', 'scan')
def scan(scanMode, dataType, preset, force='true', saveType=saveType.save):
controllerPath = '/commands/scan/runscan'
sicsController = sics.getSicsController()
scanController = sicsController.findComponentController(controllerPath)
# Configuring scan properties
# sics.hset(scanController, '/scan_variable', DEVICE_SAMX)
# sics.hset(scanController, '/scan_start', getSampleHolderPosition())
# sics.hset(scanController, '/scan_stop', getSampleHolderPosition())
sics.hset(scanController, '/numpoints', 1)
# # Hack to fix monitor selection in scan
# if (scanMode.key == 'monitor'):
# sics.hset(scanController, '/mode', 'MONITOR_1')
# else:
# sics.hset(scanController, '/mode', scanMode.key)
sics.hset(scanController, '/preset', preset)
# sics.hset(scanController, '/datatype', dataType.key)
# sics.hset(scanController, '/savetype', saveType.key)
sics.hset(scanController, '/force', force)
sics.execute('hset /instrument/dummy_motor 0', 'general')
sics.execute('hset /instrument/dummy_motor 1', 'scan')
sics.execute('hset ' + controllerPath + '/scan_variable dummy_motor', 'scan')
sics.execute('hset ' + controllerPath + '/scan_start 0', 'scan')
sics.execute('hset ' + controllerPath + '/scan_stop 0', 'scan')
sics.execute('hset ' + controllerPath + '/numpoints 1', 'scan')
if (scanMode.key == 'monitor'):
sics.execute('hset ' + controllerPath + '/mode MONITOR_1', 'scan')
else:
sics.execute('hset ' + controllerPath + '/mode ' + scanMode.key, 'scan')
sics.execute('hset ' + controllerPath + '/preset ' + str(preset), 'scan')
sics.execute('hset ' + controllerPath + '/datatype ' + dataType.key, 'scan')
sics.execute('hset ' + controllerPath + '/savetype ' + saveType.key, 'scan')
sics.execute('hset ' + controllerPath + '/force ' + force, 'scan')
sics.execute('hset /instrument/dummy_motor 2', 'general')
sics.execute('hset /instrument/dummy_motor 3', 'scan')
# Wait 1 sec to make the setting settle
time.sleep(2)
# Synchronously run scan
scanController.syncExecute()
sics.execute('hset /instrument/dummy_motor 4', 'general')
sics.execute('hset /instrument/dummy_motor 5', 'scan')
# Get output filename
filenameController = sicsController.findDeviceController('datafilename')
savedFilename = filenameController.getValue().getStringData()
log('Saved to ' + savedFilename)
return savedFilename
def drive_Ei():
sics.execute('tasub outofplane 0')
slog('fix s1, s2, a1 and a2')
sics.execute('s1 fixed 1')
sics.execute('s2 fixed 1')
sics.execute('a1 fixed 1')
sics.execute('a2 fixed 1')
sics.drive('sgl', 0)
sics.drive('sgu', 0)
sics.execute('sgl fixed 1')
sics.execute('sgu fixed 1')
slog('drive Ei ' + str(Ei.value))
sics.execute('tasub update')
time.sleep(1)
try:
sics.drive('ei', Ei.value)
except:
pass
time.sleep(1)
while str(sics.getDeviceController('ei').getStatus()) == 'RUNNING':
time.sleep(0.5)
m2.value = sicsext.getStableValue('m2').getFloatData()
m1.value = m2.value / 2
scan.value = str(math.ceil((m1.value - 2) * 1000) / 1000) + ', 0.1, 41, \'timer\', 1'
sics.execute('tasub update')
slog('unfix sgu, sgl, s1, s2, a1 and a2')
sics.execute('s2 fixed -1')
sics.execute('s1 fixed -1')
sics.execute('a1 fixed -1')
sics.execute('a2 fixed -1')
sics.execute('sgl fixed -1')
sics.execute('sgu fixed -1')
def drive(self):
if self.__is_dirty__:
driveAtt(330)
else:
return
try:
sics.clearInterrupt()
log("starting configuration")
if self.need_drive_det():
########### below code drop dhv1 and select beam stop together ###########
precision = 20
startingValue = getDhv1Value()
if startingValue > precision:
self.test_dhv1("down")
startingValue = getDhv1Value()
log("Driving dhv1 to down ...")
sics.execute("dhv1 down")
time.sleep(1)
if not self.bs is None:
selBs(self.bs)
if startingValue > precision:
time_count = 0
time_out = 6
while getDhv1Value() == startingValue and time_count < time_out:
time.sleep(0.5)
time_count += 0.5
if getDhv1Value() == startingValue:
raise Exception, "failed to start dropping dhv1"
time_count = 0
time_out = 300
while getDhv1Value() > precision and time_count < time_out:
time.sleep(0.5)
time_count += 0.5
if getDhv1Value() > precision:
raise Exception, "time out dropping dhv1"
log("dhv1 is now down")
########### below drive det and other motors ###########
self.multi_drive()
########### below code raise dhv1 and drive guide together ###########
self.test_dhv1("up")
startingValue = getDhv1Value()
log("Driving dhv1 to up ...")
sics.execute("dhv1 up")
time.sleep(1)
if self.need_drive_guide():
driveGuide(self.guide)
time_count = 0
time_out = 6
while getDhv1Value() == startingValue and time_count < time_out:
time.sleep(0.5)
time_count += 0.5
if getDhv1Value() == startingValue:
raise Exception, "failed to start raising dhv1"
time_count = 0
time_out = 300
while getDhv1Value() < 2350.0 - precision and time_count < time_out:
time.sleep(0.5)
time_count += 0.5
if getDhv1Value() < 2350.0 - precision:
raise Exception, "time out raising dhv1"
log("dhv1 is now up")
self.multi_set()
else:
if not self.bs is None:
selBs(self.bs)
if self.need_drive_guide():
driveGuide(self.guide)
self.multi_drive()
self.multi_set()
finally:
self.clear()
while sics.getStatus() != "EAGER TO EXECUTE":
time.sleep(0.3)
sics.handleInterrupt()
log("configuration is finished")
import time
from gumpy.nexus.fitting import Fitting, GAUSSIAN_FITTING
from gumpy.commons import sics
# Script control setup area
# script info
__script__.title = 'Alignment Finished'
__script__.version = ''
previous_file = 'auto_8_scan_en.py'
# Use below example to create parameters.
# The type can be string, int, float, bool, file.
cact = Act('', 'The alignment is finished.')
G1 = Group('Devices Status')
sics.execute('tasub update')
sics.getDeviceController('ei').getValue(True)
sics.getDeviceController('ef').getValue(True)
sics.getDeviceController('en').getValue(True)
m1 = Par('float', sics.getValue('m1').getFloatData())
m2 = Par('float', sics.getValue('m2').getFloatData())
s1 = Par('float', sics.getValue('s1').getFloatData())
s2 = Par('float', sics.getValue('s2').getFloatData())
a1 = Par('float', sics.getValue('a1').getFloatData())
a2 = Par('float', sics.getValue('a2').getFloatData())
Ei = Par('float', sics.getValue('ei').getFloatData())
Ef = Par('float', sics.getValue('ef').getFloatData())
En = Par('float', sics.getValue('en').getFloatData())
G1.add(m1, m2, s1, s2, a1, a2, Ei, Ef, En)
sics.execute('s2 fixed -1')
def stopHistmem():
slog('Stopping histmem ...')
sics.execute('histmem stop')
time.sleep(0.5)
