def copyTrueRelProbDistMapsForAllSpp (self, guppy):
clusterTest = False
if (clusterTest):
filespec = "spp.*.asc"
else:
filespec = "*.asc"
# 2013 10 23 - BTL
# Guppy was crashing when there were 8 species and 3 env layers.
# It would crash when trying to read in the 8 generated species
# because there were only 3 species in the directory the
# generated species were copied into.
# For some reason, it was copying the env files as the
# generated species files. Seems to work now that I've changed
# the srcFile directory.
###2013.10.23### srcFiles = gsf.buildNamesOfSrcFiles (guppy.curFullMaxentEnvLayersDirName, filespec)
#2013.11.08 - fooling around with hacking clustering species
#NEED TO MAKE NUMBER AND SOURCE OF ENV LAYERS MATCH THE ONES USED FOR
#THE CLUSTER TESTS IN THE GUPPY DIRECTORY, I.E., ALL OF MATT'S ENV LAYERS
#Then, need to copy the cluster output images instead of the maxent
#generated species for this quick and dirty tests.
print "\n\nvvvvvvvvvvvvvvvvvvvvvvvvvv\n\n***** In copyTrueRelProbDistMapsForAllSpp():\n"
if (clusterTest):
# srcDir = "/Users/Bill/D/rdv-framework/projects/guppy"
srcDir = "/Users/Bill/D/rdv-framework/projects/guppy/Clustered_kmeans_MattEnvLayers_All/ClusteredWith500pointsAnd15clusters"
else:
srcDir = guppy.sppGenOutputDir
print "\nAbout to get srcFiles with first call to gsf.buildNamesOfSrcFiles()."
srcFiles = gsf.buildNamesOfSrcFiles (srcDir, filespec)
print "srcDir = '" + srcDir + "'\n"
#pprint (srcFiles)
print "\nAbout to get fileRootNames with second call to gsf.buildNamesOfSrcFiles()."
fileRootNames = gsf.buildDestFileRootNames (guppy.sppGenOutputDir, filespec)
print "fileRootNames = "
pprint (fileRootNames)
print "***** srcFiles_1 = \n"
pprint (srcFiles)
prefix = self.variables ["PAR.trueProbDistFilePrefix"] + "."
print "\n\nprefix = " + prefix
destFilesPrefix = guppy.probDistLayersDirWithSlash + prefix
print "destFilesPrefix = " + destFilesPrefix
destFiles = [destFilesPrefix + fileRootNames[i] for i in range (len(fileRootNames))]
pprint (destFiles)
print "\n\n"
print "^^^^^^^^^^^^^^^^^^^^^^^^^^^^\n\n"
gsf.copyFiles (srcFiles, destFiles)
def genEnvLayers (self):
# imgSrcDir = "/Users/Bill/D/Projects_RMIT/AAA_PapersInProgress/G01 - simulated_ecology/MaxentTests/MattsVicTestLandscape/MtBuffaloEnvVarsSubset/"
srcDir = self.envLayersDir
filespec = "*.asc"
targetDirWithSlash = self.curFullMaxentEnvLayersDirName + CONST.dirSlash
# NOTE: THIS DOESN'T WORK FOR REMOTE (URL) FILES YET...
# copyFiles_Matt (imgSrcDir, "*.asc", targetDirWithSlash)
print "\n>>> About to build srcFiles with call to gsf.buildNamesOfSrcFiles() in GuppyEnvLayers::genEnvLayers()\n"
srcFiles = gsf.buildNamesOfSrcFiles (srcDir, filespec)
print "\n>>> About to build destFiles with call to gsf.buildNamesOfSrcFiles() in GuppyEnvLayers::genEnvLayers()\n"
destFiles = gsf.buildNamesOfDestFiles (srcDir, filespec, targetDirWithSlash)
print "\n>>> About to copy srcFiles to destFiles with call to gsf.copyFiles() in GuppyEnvLayers::genEnvLayers()\n"
print "\n>>>>>> In GuppyMattEnvLayers.genEnvLayers():"
print "\n len (srcFiles) = "
print len (srcFiles)
print "\n len (destFiles) = "
print len (destFiles)
print "\n self.numEnvLayers BEFORE setting = "
print self.numEnvLayers
self.numEnvLayers = len (srcFiles)
print "\n self.numEnvLayers AFTER setting = "
print self.numEnvLayers
gsf.copyFiles (srcFiles, destFiles)