def test_add_registries():
registries1 = new_registry_list()
registries2 = new_registry_list()
summed_registries = registries1 + registries2
assert len([r for r in summed_registries.registries]) == (
len([r for r in registries1.registries]) +
len([r for r in registries2.registries])
)
def obj_registry_with_none_with_defaults(request):
return {
"registries":
new_registry_list(get_fixture_val(request.param[0], request)),
"dumpable_object":
get_fixture_val(request.param[1], request)
}
def test_require_group_exist(self, h5py_file_with_group):
group = h5py_file_with_group["example"]
h5preserve_group = H5PreserveGroup(
h5py_file_with_group, new_registry_list()
)
h5preserve_subgroup = h5preserve_group.require_group("example")
assert h5preserve_subgroup.h5py_group == group
def test_h5py_external_link(self, h5py_file_with_group):
external = ExternalLink("external.hdf5", "example")
registries = new_registry_list()
registries.to_file(h5py_file_with_group, "alias", external)
assert h5py_file_with_group.get("alias",
getlink=True).path == "example"
assert h5py_file_with_group.get(
"alias", getlink=True).filename == "external.hdf5"
def test_roundtrip(self, h5py_file):
assert h5py_file == H5PreserveFile(h5py_file,
new_registry_list()).h5py_file
def test_create_group(self, h5py_file_with_group):
group = h5py_file_with_group["example"]
h5preserve_group = H5PreserveGroup(group, new_registry_list())
h5preserve_subgroup = h5preserve_group.create_group("subexample")
assert h5preserve_subgroup.h5py_group == group["subexample"]
def test_roundtrip(self, h5py_file_with_group):
group = h5py_file_with_group["example"]
assert group == H5PreserveGroup(
group, new_registry_list()
).h5py_group
def test_h5py_external_link(self, h5py_file_with_group):
external = ExternalLink("external.hdf5", "example")
registries = new_registry_list()
registries.to_file(h5py_file_with_group, "alias", external)
assert h5py_file_with_group.get("alias", getlink=True).path == "example"
assert h5py_file_with_group.get("alias", getlink=True).filename == "external.hdf5"
def test_h5py_soft_link(self, h5py_file_with_group):
soft_link = SoftLink("example")
registries = new_registry_list()
registries.to_file(h5py_file_with_group, "alias", soft_link)
assert h5py_file_with_group.get("alias", getlink=True).path == "example"
def obj_registry_with_none_with_defaults(request):
return {
"registries": new_registry_list(request.param[0]),
"dumpable_object": request.param[1]
}
def obj_registry_with_none_with_defaults(request):
return {
"registries": new_registry_list(request.param[0]),
"dumpable_object": request.param[1]
}
def test_roundtrip(self, h5py_file):
assert h5py_file == H5PreserveFile(
h5py_file, new_registry_list()
).h5py_file
"""
Defines common data structures and how they are to be written to files
"""
from h5preserve import new_registry_list
from . import _dumpers # noqa
from . import _loaders # noqa
from ._containers import ( # noqa
Solution, SolutionInput, ConfigInput, Run, InitialConditions,
)
from ._old_dict_loading import (dict_as_group_registry as
_dict_as_group_registry)
from ._utils import ds_registry as _ds_registry, get_fields
registries = new_registry_list(_ds_registry, _dict_as_group_registry)
CONFIG_FIELDS = get_fields(ConfigInput)
def test_h5py_soft_link(self, h5py_file_with_group):
soft_link = SoftLink("example")
registries = new_registry_list()
registries.to_file(h5py_file_with_group, "alias", soft_link)
assert h5py_file_with_group.get("alias",
getlink=True).path == "example"