def read_h5(filename): """Read an hdf5 file :Parameters: - `filename` (str) - name of the file to read """ data = File(filename.replace('\\', ''), 'r')['Data'] im_out = np.zeros(data.shape, dtype=data.dtype) data.read_direct(im_out) return SpatialImage(im_out.transpose(2, 1, 0))